Read summary

Number of reads

Number of reads after applying read length and quality filters. Read counts will also reflect host depletion and unclassified reads (kraken2 approach) and unmapped reads (minimap2 approach). Percentages are calculated from reads after the filtering.

Note that in the minimap2 approach, there are two filters based on the mapping identity and coverage that can increase the number of unclassified sequences. This table shows the unmapped reads before both filters are applied.

Sample alias Reads Unclassified|Unmapped Unclassified|Unmapped (%)
SRR34843736 164894 121973 73.97
SRR34843737 542405 232258 42.82
SRR34843738 567563 178024 31.37
SRR34843739 226285 81012 35.8

Lineages

Sunburst

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

Taxonomy

Barplot of the 9 most abundant taxa at the phylum rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the class rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the order rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the family rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the genus rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the species rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Abundances

Abundance table for the phylum rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

phylum SRR34843736 SRR34843737 SRR34843738 SRR34843739 total superkingdom kingdom tax
Actinomycetota 39 156 509 0 704 Bacteria Bacillati Bacteria;Bacillati;Actinomycetota
Bacillota 16 203 2034 30 2283 Bacteria Bacillati Bacteria;Bacillati;Bacillota
Cyanobacteriota 10 17 117 0 144 Bacteria Bacillati Bacteria;Bacillati;Cyanobacteriota
Mycoplasmatota 10 14 115 0 139 Bacteria Bacillati Bacteria;Bacillati;Mycoplasmatota
Aquificota 0 0 10 0 10 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Aquificota
Bacteroidota 0 64 23 18 105 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Bacteroidota
Pseudomonadota 242 968 3456 0 4666 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Pseudomonadota
Deinococcota 0 27 72 0 99 Bacteria Thermotogati Bacteria;Thermotogati;Deinococcota
Chordata 23715 249322 234062 127883 634982 Eukaryota Metazoa Eukaryota;Metazoa;Chordata
Unknown 121973 232258 178024 81012 613267 Unclassified Unknown Unclassified;Unknown;Unknown
Preplasmiviricota 10 0 18 0 28 Viruses Bamfordvirae Viruses;Bamfordvirae;Preplasmiviricota
Peploviricota 387 29682 194 16438 46701 Viruses Heunggongvirae Viruses;Heunggongvirae;Peploviricota
Negarnaviricota 18270 28868 147849 557 195544 Viruses Orthornavirae Viruses;Orthornavirae;Negarnaviricota
Pisuviricota 0 0 14 0 14 Viruses Orthornavirae Viruses;Orthornavirae;Pisuviricota

Abundance table for the class rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

class SRR34843736 SRR34843737 SRR34843738 SRR34843739 total superkingdom kingdom phylum tax
Actinomycetes 39 156 509 0 704 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Actinomycetes
Bacilli 16 203 2024 30 2273 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Bacilli
Clostridia 0 0 10 0 10 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Clostridia
Cyanophyceae 10 17 117 0 144 Bacteria Bacillati Cyanobacteriota Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae
Mollicutes 10 14 115 0 139 Bacteria Bacillati Mycoplasmatota Bacteria;Bacillati;Mycoplasmatota;Mollicutes
Aquificia 0 0 10 0 10 Bacteria Pseudomonadati Aquificota Bacteria;Pseudomonadati;Aquificota;Aquificia
Cytophagia 0 14 0 0 14 Bacteria Pseudomonadati Bacteroidota Bacteria;Pseudomonadati;Bacteroidota;Cytophagia
Flavobacteriia 0 50 23 18 91 Bacteria Pseudomonadati Bacteroidota Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia
Alphaproteobacteria 0 0 26 0 26 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 0 0 23 0 23 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria
Gammaproteobacteria 242 968 3407 0 4617 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria
Deinococci 0 27 72 0 99 Bacteria Thermotogati Deinococcota Bacteria;Thermotogati;Deinococcota;Deinococci
Mammalia 23715 249322 234062 127883 634982 Eukaryota Metazoa Chordata Eukaryota;Metazoa;Chordata;Mammalia
Unknown 121973 232258 178024 81012 613267 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown
Tectiliviricetes 10 0 18 0 28 Viruses Bamfordvirae Preplasmiviricota Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes
Herviviricetes 387 29682 194 16438 46701 Viruses Heunggongvirae Peploviricota Viruses;Heunggongvirae;Peploviricota;Herviviricetes
Ellioviricetes 17608 27750 144434 490 190282 Viruses Orthornavirae Negarnaviricota Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes
Monjiviricetes 662 1118 3415 67 5262 Viruses Orthornavirae Negarnaviricota Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes
Pisoniviricetes 0 0 14 0 14 Viruses Orthornavirae Pisuviricota Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes

Abundance table for the order rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

order SRR34843736 SRR34843737 SRR34843738 SRR34843739 total superkingdom kingdom phylum class tax
Kitasatosporales 0 0 144 0 144 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales
Micrococcales 22 82 105 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales
Micromonosporales 0 0 15 0 15 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales
Mycobacteriales 0 0 102 0 102 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales
Propionibacteriales 17 74 121 0 212 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales
Streptosporangiales 0 0 22 0 22 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales
Bacillales 0 178 460 0 638 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Bacillales
Lactobacillales 16 25 1564 30 1635 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales
Eubacteriales 0 0 10 0 10 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales
Nostocales 0 0 16 0 16 Bacteria Bacillati Cyanobacteriota Cyanophyceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales
Pleurocapsales 10 17 86 0 113 Bacteria Bacillati Cyanobacteriota Cyanophyceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales
Pseudanabaenales 0 0 15 0 15 Bacteria Bacillati Cyanobacteriota Cyanophyceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales
Entomoplasmatales 10 14 115 0 139 Bacteria Bacillati Mycoplasmatota Mollicutes Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales
Aquificales 0 0 10 0 10 Bacteria Pseudomonadati Aquificota Aquificia Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales
Cytophagales 0 14 0 0 14 Bacteria Pseudomonadati Bacteroidota Cytophagia Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales
Flavobacteriales 0 50 23 18 91 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales
Rhodobacterales 0 0 16 0 16 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales
Sphingomonadales 0 0 10 0 10 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales
Burkholderiales 0 0 23 0 23 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales
Enterobacterales 0 0 736 0 736 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales
Lysobacterales 15 40 192 0 247 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales
Oceanospirillales 0 0 59 0 59 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales
Pseudomonadales 193 327 2031 0 2551 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales
Vibrionales 34 601 389 0 1024 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales
Deinococcales 0 27 72 0 99 Bacteria Thermotogati Deinococcota Deinococci Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales
Primates 23715 249322 234062 127883 634982 Eukaryota Metazoa Chordata Mammalia Eukaryota;Metazoa;Chordata;Mammalia;Primates
Unknown 121973 232258 178024 81012 613267 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown
Rowavirales 10 0 18 0 28 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales
Herpesvirales 387 29682 194 16438 46701 Viruses Heunggongvirae Peploviricota Herviviricetes Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales
Bunyavirales 17608 27750 144434 490 190282 Viruses Orthornavirae Negarnaviricota Ellioviricetes Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales
Mononegavirales 662 1118 3415 67 5262 Viruses Orthornavirae Negarnaviricota Monjiviricetes Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales
Nidovirales 0 0 14 0 14 Viruses Orthornavirae Pisuviricota Pisoniviricetes Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales

Abundance table for the family rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

family SRR34843736 SRR34843737 SRR34843738 SRR34843739 total superkingdom kingdom phylum class order tax
Streptomycetaceae 0 0 144 0 144 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae
Microbacteriaceae 22 82 105 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae
Micromonosporaceae 0 0 15 0 15 Bacteria Bacillati Actinomycetota Actinomycetes Micromonosporales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales;Micromonosporaceae
Corynebacteriaceae 0 0 102 0 102 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae
Propionibacteriaceae 17 74 121 0 212 Bacteria Bacillati Actinomycetota Actinomycetes Propionibacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae
Thermomonosporaceae 0 0 22 0 22 Bacteria Bacillati Actinomycetota Actinomycetes Streptosporangiales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales;Thermomonosporaceae
Bacillaceae 0 178 413 0 591 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae
Staphylococcaceae 0 0 47 0 47 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Staphylococcaceae
Lactobacillaceae 16 25 1426 30 1497 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 0 0 138 0 138 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Clostridiaceae 0 0 10 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae
Nostocaceae 0 0 16 0 16 Bacteria Bacillati Cyanobacteriota Cyanophyceae Nostocales Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales;Nostocaceae
Dermocarpellaceae 10 17 86 0 113 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales;Dermocarpellaceae
Pseudanabaenaceae 0 0 15 0 15 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales;Pseudanabaenaceae
Spiroplasmataceae 10 14 115 0 139 Bacteria Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales;Spiroplasmataceae
Aquificaceae 0 0 10 0 10 Bacteria Pseudomonadati Aquificota Aquificia Aquificales Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales;Aquificaceae
Fulvivirgaceae 0 14 0 0 14 Bacteria Pseudomonadati Bacteroidota Cytophagia Cytophagales Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales;Fulvivirgaceae
Flavobacteriaceae 0 50 23 18 91 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae
Roseobacteraceae 0 0 16 0 16 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Roseobacteraceae
Erythrobacteraceae 0 0 10 0 10 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Erythrobacteraceae
Burkholderiaceae 0 0 23 0 23 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae
Enterobacteriaceae 0 0 736 0 736 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Lysobacteraceae 15 40 192 0 247 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae
Halomonadaceae 0 0 59 0 59 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales;Halomonadaceae
Pseudomonadaceae 193 327 2031 0 2551 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae
Vibrionaceae 34 601 389 0 1024 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae
Deinococcaceae 0 27 72 0 99 Bacteria Thermotogati Deinococcota Deinococci Deinococcales Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales;Deinococcaceae
Hominidae 23715 249322 234062 127883 634982 Eukaryota Metazoa Chordata Mammalia Primates Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae
Unknown 121973 232258 178024 81012 613267 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown
Adenoviridae 10 0 18 0 28 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Rowavirales Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales;Adenoviridae
Orthoherpesviridae 387 29682 194 16438 46701 Viruses Heunggongvirae Peploviricota Herviviricetes Herpesvirales Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales;Orthoherpesviridae
Peribunyaviridae 17608 27750 144434 490 190282 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae
Paramyxoviridae 662 1118 3391 67 5238 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae
Rhabdoviridae 0 0 24 0 24 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Rhabdoviridae
Coronaviridae 0 0 14 0 14 Viruses Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae

Abundance table for the genus rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

genus SRR34843736 SRR34843737 SRR34843738 SRR34843739 total superkingdom kingdom phylum class order family tax
Streptomyces 0 0 144 0 144 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces
Curtobacterium 22 82 105 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Curtobacterium
Micromonospora 0 0 15 0 15 Bacteria Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales;Micromonosporaceae;Micromonospora
Corynebacterium 0 0 102 0 102 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium
Cutibacterium 17 74 121 0 212 Bacteria Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium
Actinomadura 0 0 22 0 22 Bacteria Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales;Thermomonosporaceae;Actinomadura
Bacillus 0 178 413 0 591 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus
Staphylococcus 0 0 47 0 47 Bacteria Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus
Lactiplantibacillus 16 25 1426 30 1497 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Lactococcus 0 0 138 0 138 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Clostridium 0 0 10 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium
Nostoc 0 0 16 0 16 Bacteria Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales;Nostocaceae;Nostoc
Stanieria 10 17 86 0 113 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales;Dermocarpellaceae;Stanieria
Pseudanabaena 0 0 15 0 15 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales;Pseudanabaenaceae;Pseudanabaena
Spiroplasma 10 14 115 0 139 Bacteria Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales;Spiroplasmataceae;Spiroplasma
Aquifex 0 0 10 0 10 Bacteria Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales;Aquificaceae;Aquifex
Fulvivirga 0 14 0 0 14 Bacteria Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales;Fulvivirgaceae;Fulvivirga
Flavobacterium 0 0 13 0 13 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Flavobacterium
Polaribacter 0 50 0 18 68 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Polaribacter
Tenacibaculum 0 0 10 0 10 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Tenacibaculum
Celeribacter 0 0 16 0 16 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Roseobacteraceae;Celeribacter
Qipengyuania 0 0 10 0 10 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Erythrobacteraceae;Qipengyuania
Polynucleobacter 0 0 23 0 23 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Polynucleobacter
Escherichia 0 0 571 0 571 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 0 0 165 0 165 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Pseudoxanthomonas 0 10 37 0 47 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Pseudoxanthomonas
Stenotrophomonas 15 30 155 0 200 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Stenotrophomonas
Halomonas 0 0 59 0 59 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas
Pseudomonas 193 327 2031 0 2551 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas
Vibrio 34 601 389 0 1024 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio
Deinococcus 0 27 72 0 99 Bacteria Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales;Deinococcaceae;Deinococcus
Homo 23715 249322 234062 127883 634982 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo
Unknown 121973 232258 178024 81012 613267 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown
Mastadenovirus 10 0 18 0 28 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Rowavirales Adenoviridae Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales;Adenoviridae;Mastadenovirus
Simplexvirus 387 29682 194 16438 46701 Viruses Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales;Orthoherpesviridae;Simplexvirus
Orthobunyavirus 17608 27750 144434 490 190282 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus
Henipavirus 662 1118 3391 67 5238 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Henipavirus
Vesiculovirus 0 0 24 0 24 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Rhabdoviridae;Vesiculovirus
Betacoronavirus 0 0 14 0 14 Viruses Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae;Betacoronavirus

Abundance table for the species rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

species SRR34843736 SRR34843737 SRR34843738 SRR34843739 total superkingdom kingdom phylum class order family genus tax
Streptomyces celluloflavus 0 0 17 0 17 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces celluloflavus
Streptomyces netropsis 0 0 20 0 20 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces netropsis
Streptomyces sp. NBC_01367 0 0 75 0 75 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces sp. NBC_01367
Streptomyces sp. T12 0 0 32 0 32 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces sp. T12
Curtobacterium flaccumfaciens 22 82 105 0 209 Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Curtobacterium;Curtobacterium flaccumfaciens
Micromonospora krabiensis 0 0 15 0 15 Bacteria Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales;Micromonosporaceae;Micromonospora;Micromonospora krabiensis
Corynebacterium cystitidis 0 0 10 0 10 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium cystitidis
Corynebacterium kroppenstedtii 0 0 69 0 69 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium kroppenstedtii
Corynebacterium xerosis 0 0 23 0 23 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium xerosis
Cutibacterium acnes 17 74 121 0 212 Bacteria Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium;Cutibacterium acnes
Actinomadura verrucosospora 0 0 22 0 22 Bacteria Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales;Thermomonosporaceae;Actinomadura;Actinomadura verrucosospora
Bacillus velezensis 0 178 413 0 591 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus velezensis
Staphylococcus hominis 0 0 47 0 47 Bacteria Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;Staphylococcus hominis
Lactiplantibacillus carotarum 16 25 1426 30 1497 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus carotarum
Lactococcus lactis 0 0 138 0 138 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Clostridium tyrobutyricum 0 0 10 0 10 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium tyrobutyricum
Nostoc sp. PCC 7120 = FACHB-418 0 0 16 0 16 Bacteria Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales;Nostocaceae;Nostoc;Nostoc sp. PCC 7120 = FACHB-418
Stanieria cyanosphaera 10 17 86 0 113 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Stanieria Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales;Dermocarpellaceae;Stanieria;Stanieria cyanosphaera
Pseudanabaena mucicola 0 0 15 0 15 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaena Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales;Pseudanabaenaceae;Pseudanabaena;Pseudanabaena mucicola
Spiroplasma endosymbiont of Aspidapion aeneum 10 14 115 0 139 Bacteria Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales;Spiroplasmataceae;Spiroplasma;Spiroplasma endosymbiont of Aspidapion aeneum
Aquifex aeolicus 0 0 10 0 10 Bacteria Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Aquifex Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales;Aquificaceae;Aquifex;Aquifex aeolicus
Fulvivirga lutea 0 14 0 0 14 Bacteria Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Fulvivirga Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales;Fulvivirgaceae;Fulvivirga;Fulvivirga lutea
Flavobacterium sp. ZE23DGlu08 0 0 13 0 13 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Flavobacterium;Flavobacterium sp. ZE23DGlu08
Polaribacter reichenbachii 0 50 0 18 68 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Polaribacter;Polaribacter reichenbachii
Tenacibaculum maritimum 0 0 10 0 10 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Tenacibaculum;Tenacibaculum maritimum
Celeribacter indicus 0 0 16 0 16 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Roseobacteraceae;Celeribacter;Celeribacter indicus
Qipengyuania soli 0 0 10 0 10 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Erythrobacteraceae;Qipengyuania;Qipengyuania soli
Polynucleobacter sp. MWH-UH25E 0 0 23 0 23 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Polynucleobacter;Polynucleobacter sp. MWH-UH25E
Escherichia coli 0 0 571 0 571 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Klebsiella pneumoniae 0 0 165 0 165 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella pneumoniae
Pseudoxanthomonas sp. SL93 0 10 37 0 47 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Pseudoxanthomonas;Pseudoxanthomonas sp. SL93
Stenotrophomonas maltophilia 15 30 155 0 200 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Stenotrophomonas;Stenotrophomonas maltophilia
Halomonas sp. JS92-SW72 0 0 59 0 59 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas;Halomonas sp. JS92-SW72
Pseudomonas sp. CIP-10 193 327 2031 0 2551 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas sp. CIP-10
Vibrio anguillarum 34 58 253 0 345 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;Vibrio anguillarum
Vibrio cholerae 0 514 0 0 514 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;Vibrio cholerae
Vibrio parahaemolyticus 0 29 136 0 165 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;Vibrio parahaemolyticus
Deinococcus wulumuqiensis 0 27 72 0 99 Bacteria Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales;Deinococcaceae;Deinococcus;Deinococcus wulumuqiensis
Homo sapiens 23715 249322 234062 127883 634982 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Homo Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens
Unknown 121973 232258 178024 81012 613267 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown
Human mastadenovirus C 10 0 18 0 28 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Rowavirales Adenoviridae Mastadenovirus Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales;Adenoviridae;Mastadenovirus;Human mastadenovirus C
Simplexvirus pteropodidalpha2 387 29682 194 16438 46701 Viruses Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales;Orthoherpesviridae;Simplexvirus;Simplexvirus pteropodidalpha2
Orthobunyavirus bertiogaense 62 90 566 0 718 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus bertiogaense
Orthobunyavirus gamboaense 712 1392 7126 29 9259 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus gamboaense
Orthobunyavirus manzanillaense 0 0 17 0 17 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus manzanillaense
Orthobunyavirus oropoucheense 16834 26248 136670 461 180213 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus oropoucheense
Orthobunyavirus patoisense 0 20 55 0 75 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus patoisense
Henipavirus cedarense 662 1118 3391 67 5238 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Henipavirus Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Henipavirus;Henipavirus cedarense
Vesiculovirus indiana 0 0 24 0 24 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Rhabdoviridae;Vesiculovirus;Vesiculovirus indiana
Severe acute respiratory syndrome-related coronavirus 0 0 14 0 14 Viruses Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae;Betacoronavirus;Severe acute respiratory syndrome-related coronavirus

Rarefied abundance table for the phylum rank.

All samples have been randomly subsetted to have the same number of reads.

phylum SRR34843737 SRR34843738 total superkingdom kingdom tax
Actinomycetota 148 460 221 Bacteria Bacillati Bacteria;Bacillati;Actinomycetota
Bacillota 199 1853 820 Bacteria Bacillati Bacteria;Bacillati;Bacillota
Cyanobacteriota 16 102 44 Bacteria Bacillati Bacteria;Bacillati;Cyanobacteriota
Mycoplasmatota 14 103 51 Bacteria Bacillati Bacteria;Bacillati;Mycoplasmatota
Aquificota 0 8 3 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Aquificota
Bacteroidota 55 21 32 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Bacteroidota
Pseudomonadota 913 3129 1631 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Pseudomonadota
Deinococcota 22 66 37 Bacteria Thermotogati Bacteria;Thermotogati;Deinococcota
Chordata 236770 212603 218031 Eukaryota Metazoa Eukaryota;Metazoa;Chordata
Unknown 220728 161680 210292 Unclassified Unknown Unclassified;Unknown;Unknown
Preplasmiviricota 0 17 7 Viruses Bamfordvirae Viruses;Bamfordvirae;Preplasmiviricota
Peploviricota 28183 178 16128 Viruses Heunggongvirae Viruses;Heunggongvirae;Peploviricota
Negarnaviricota 27452 134266 67200 Viruses Orthornavirae Viruses;Orthornavirae;Negarnaviricota
Pisuviricota 0 14 3 Viruses Orthornavirae Viruses;Orthornavirae;Pisuviricota

Rarefied abundance table for the class rank.

All samples have been randomly subsetted to have the same number of reads.

class SRR34843737 SRR34843738 total superkingdom kingdom phylum tax
Actinomycetes 148 460 221 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Actinomycetes
Bacilli 199 1843 817 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Bacilli
Clostridia 0 10 3 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Clostridia
Cyanophyceae 16 102 44 Bacteria Bacillati Cyanobacteriota Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae
Mollicutes 14 103 51 Bacteria Bacillati Mycoplasmatota Bacteria;Bacillati;Mycoplasmatota;Mollicutes
Aquificia 0 8 3 Bacteria Pseudomonadati Aquificota Bacteria;Pseudomonadati;Aquificota;Aquificia
Cytophagia 12 0 4 Bacteria Pseudomonadati Bacteroidota Bacteria;Pseudomonadati;Bacteroidota;Cytophagia
Flavobacteriia 43 21 28 Bacteria Pseudomonadati Bacteroidota Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia
Alphaproteobacteria 0 24 12 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 0 19 7 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria
Gammaproteobacteria 913 3086 1612 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria
Deinococci 22 66 37 Bacteria Thermotogati Deinococcota Bacteria;Thermotogati;Deinococcota;Deinococci
Mammalia 236770 212603 218031 Eukaryota Metazoa Chordata Eukaryota;Metazoa;Chordata;Mammalia
Unknown 220728 161680 210292 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown
Tectiliviricetes 0 17 7 Viruses Bamfordvirae Preplasmiviricota Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes
Herviviricetes 28183 178 16128 Viruses Heunggongvirae Peploviricota Viruses;Heunggongvirae;Peploviricota;Herviviricetes
Ellioviricetes 26387 131170 65404 Viruses Orthornavirae Negarnaviricota Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes
Monjiviricetes 1065 3096 1796 Viruses Orthornavirae Negarnaviricota Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes
Pisoniviricetes 0 14 3 Viruses Orthornavirae Pisuviricota Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes

Rarefied abundance table for the order rank.

All samples have been randomly subsetted to have the same number of reads.

order SRR34843737 SRR34843738 total superkingdom kingdom phylum class tax
Kitasatosporales 0 133 53 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales
Micrococcales 81 99 68 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales
Micromonosporales 0 13 7 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales
Mycobacteriales 0 93 31 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales
Propionibacteriales 67 104 59 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales
Streptosporangiales 0 18 3 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales
Bacillales 175 420 224 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Bacillales
Lactobacillales 24 1423 593 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales
Eubacteriales 0 10 3 Bacteria Bacillati Bacillota Clostridia Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales
Nostocales 0 16 5 Bacteria Bacillati Cyanobacteriota Cyanophyceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales
Pleurocapsales 16 74 36 Bacteria Bacillati Cyanobacteriota Cyanophyceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales
Pseudanabaenales 0 12 3 Bacteria Bacillati Cyanobacteriota Cyanophyceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales
Entomoplasmatales 14 103 51 Bacteria Bacillati Mycoplasmatota Mollicutes Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales
Aquificales 0 8 3 Bacteria Pseudomonadati Aquificota Aquificia Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales
Cytophagales 12 0 4 Bacteria Pseudomonadati Bacteroidota Cytophagia Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales
Flavobacteriales 43 21 28 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales
Rhodobacterales 0 14 9 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales
Sphingomonadales 0 10 3 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales
Burkholderiales 0 19 7 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales
Enterobacterales 0 662 238 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales
Lysobacterales 37 175 80 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales
Oceanospirillales 0 55 18 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales
Pseudomonadales 313 1843 895 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales
Vibrionales 563 351 381 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales
Deinococcales 22 66 37 Bacteria Thermotogati Deinococcota Deinococci Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales
Primates 236770 212603 218031 Eukaryota Metazoa Chordata Mammalia Eukaryota;Metazoa;Chordata;Mammalia;Primates
Unknown 220728 161680 210292 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown
Rowavirales 0 17 7 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales
Herpesvirales 28183 178 16128 Viruses Heunggongvirae Peploviricota Herviviricetes Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales
Bunyavirales 26387 131170 65404 Viruses Orthornavirae Negarnaviricota Ellioviricetes Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales
Mononegavirales 1065 3096 1796 Viruses Orthornavirae Negarnaviricota Monjiviricetes Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales
Nidovirales 0 14 3 Viruses Orthornavirae Pisuviricota Pisoniviricetes Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales

Rarefied abundance table for the family rank.

All samples have been randomly subsetted to have the same number of reads.

family SRR34843737 SRR34843738 total superkingdom kingdom phylum class order tax
Streptomycetaceae 0 133 53 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae
Microbacteriaceae 81 99 68 Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae
Micromonosporaceae 0 13 7 Bacteria Bacillati Actinomycetota Actinomycetes Micromonosporales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales;Micromonosporaceae
Corynebacteriaceae 0 93 31 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae
Propionibacteriaceae 67 104 59 Bacteria Bacillati Actinomycetota Actinomycetes Propionibacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae
Thermomonosporaceae 0 18 3 Bacteria Bacillati Actinomycetota Actinomycetes Streptosporangiales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales;Thermomonosporaceae
Bacillaceae 175 376 205 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae
Staphylococcaceae 0 44 19 Bacteria Bacillati Bacillota Bacilli Bacillales Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Staphylococcaceae
Lactobacillaceae 24 1294 530 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 0 129 63 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Clostridiaceae 0 10 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae
Nostocaceae 0 16 5 Bacteria Bacillati Cyanobacteriota Cyanophyceae Nostocales Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales;Nostocaceae
Dermocarpellaceae 16 74 36 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales;Dermocarpellaceae
Pseudanabaenaceae 0 12 3 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales;Pseudanabaenaceae
Spiroplasmataceae 14 103 51 Bacteria Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales;Spiroplasmataceae
Aquificaceae 0 8 3 Bacteria Pseudomonadati Aquificota Aquificia Aquificales Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales;Aquificaceae
Fulvivirgaceae 12 0 4 Bacteria Pseudomonadati Bacteroidota Cytophagia Cytophagales Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales;Fulvivirgaceae
Flavobacteriaceae 43 21 28 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae
Roseobacteraceae 0 14 9 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Roseobacteraceae
Erythrobacteraceae 0 10 3 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Erythrobacteraceae
Burkholderiaceae 0 19 7 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae
Enterobacteriaceae 0 662 238 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Lysobacteraceae 37 175 80 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae
Halomonadaceae 0 55 18 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales;Halomonadaceae
Pseudomonadaceae 313 1843 895 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae
Vibrionaceae 563 351 381 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae
Deinococcaceae 22 66 37 Bacteria Thermotogati Deinococcota Deinococci Deinococcales Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales;Deinococcaceae
Hominidae 236770 212603 218031 Eukaryota Metazoa Chordata Mammalia Primates Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae
Unknown 220728 161680 210292 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown
Adenoviridae 0 17 7 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Rowavirales Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales;Adenoviridae
Orthoherpesviridae 28183 178 16128 Viruses Heunggongvirae Peploviricota Herviviricetes Herpesvirales Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales;Orthoherpesviridae
Peribunyaviridae 26387 131170 65404 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae
Paramyxoviridae 1065 3076 1791 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae
Rhabdoviridae 0 20 5 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Rhabdoviridae
Coronaviridae 0 14 3 Viruses Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae

Rarefied abundance table for the genus rank.

All samples have been randomly subsetted to have the same number of reads.

genus SRR34843737 SRR34843738 total superkingdom kingdom phylum class order family tax
Streptomyces 0 133 53 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces
Curtobacterium 81 99 68 Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Curtobacterium
Micromonospora 0 13 7 Bacteria Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales;Micromonosporaceae;Micromonospora
Corynebacterium 0 93 31 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium
Cutibacterium 67 104 59 Bacteria Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium
Actinomadura 0 18 3 Bacteria Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales;Thermomonosporaceae;Actinomadura
Bacillus 175 376 205 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus
Staphylococcus 0 44 19 Bacteria Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus
Lactiplantibacillus 24 1294 530 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Lactococcus 0 129 63 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Clostridium 0 10 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium
Nostoc 0 16 5 Bacteria Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales;Nostocaceae;Nostoc
Stanieria 16 74 36 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales;Dermocarpellaceae;Stanieria
Pseudanabaena 0 12 3 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales;Pseudanabaenaceae;Pseudanabaena
Spiroplasma 14 103 51 Bacteria Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales;Spiroplasmataceae;Spiroplasma
Aquifex 0 8 3 Bacteria Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales;Aquificaceae;Aquifex
Fulvivirga 12 0 4 Bacteria Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales;Fulvivirgaceae;Fulvivirga
Flavobacterium 0 12 3 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Flavobacterium
Polaribacter 43 0 24 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Polaribacter
Tenacibaculum 0 9 1 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Tenacibaculum
Celeribacter 0 14 9 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Roseobacteraceae;Celeribacter
Qipengyuania 0 10 3 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Erythrobacteraceae;Qipengyuania
Polynucleobacter 0 19 7 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Polynucleobacter
Escherichia 0 516 183 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 0 146 55 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Pseudoxanthomonas 10 35 17 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Pseudoxanthomonas
Stenotrophomonas 27 140 63 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Stenotrophomonas
Halomonas 0 55 18 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas
Pseudomonas 313 1843 895 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas
Vibrio 563 351 381 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio
Deinococcus 22 66 37 Bacteria Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales;Deinococcaceae;Deinococcus
Homo 236770 212603 218031 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo
Unknown 220728 161680 210292 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown
Mastadenovirus 0 17 7 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Rowavirales Adenoviridae Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales;Adenoviridae;Mastadenovirus
Simplexvirus 28183 178 16128 Viruses Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales;Orthoherpesviridae;Simplexvirus
Orthobunyavirus 26387 131170 65404 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus
Henipavirus 1065 3076 1791 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Henipavirus
Vesiculovirus 0 20 5 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Rhabdoviridae;Vesiculovirus
Betacoronavirus 0 14 3 Viruses Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae;Betacoronavirus

Rarefied abundance table for the species rank.

All samples have been randomly subsetted to have the same number of reads.

species SRR34843737 SRR34843738 total superkingdom kingdom phylum class order family genus tax
Streptomyces celluloflavus 0 17 8 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces celluloflavus
Streptomyces netropsis 0 19 9 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces netropsis
Streptomyces sp. NBC_01367 0 69 22 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces sp. NBC_01367
Streptomyces sp. T12 0 28 14 Bacteria Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Bacteria;Bacillati;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces sp. T12
Curtobacterium flaccumfaciens 81 99 68 Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Curtobacterium;Curtobacterium flaccumfaciens
Micromonospora krabiensis 0 13 7 Bacteria Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Bacteria;Bacillati;Actinomycetota;Actinomycetes;Micromonosporales;Micromonosporaceae;Micromonospora;Micromonospora krabiensis
Corynebacterium cystitidis 0 10 2 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium cystitidis
Corynebacterium kroppenstedtii 0 62 20 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium kroppenstedtii
Corynebacterium xerosis 0 21 9 Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium xerosis
Cutibacterium acnes 67 104 59 Bacteria Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium;Cutibacterium acnes
Actinomadura verrucosospora 0 18 3 Bacteria Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Bacteria;Bacillati;Actinomycetota;Actinomycetes;Streptosporangiales;Thermomonosporaceae;Actinomadura;Actinomadura verrucosospora
Bacillus velezensis 175 376 205 Bacteria Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus velezensis
Staphylococcus hominis 0 44 19 Bacteria Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Bacteria;Bacillati;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;Staphylococcus hominis
Lactiplantibacillus carotarum 24 1294 530 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus carotarum
Lactococcus lactis 0 129 63 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Clostridium tyrobutyricum 0 10 3 Bacteria Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacillati;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium tyrobutyricum
Nostoc sp. PCC 7120 = FACHB-418 0 16 5 Bacteria Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Nostocales;Nostocaceae;Nostoc;Nostoc sp. PCC 7120 = FACHB-418
Stanieria cyanosphaera 16 74 36 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Stanieria Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pleurocapsales;Dermocarpellaceae;Stanieria;Stanieria cyanosphaera
Pseudanabaena mucicola 0 12 3 Bacteria Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaena Bacteria;Bacillati;Cyanobacteriota;Cyanophyceae;Pseudanabaenales;Pseudanabaenaceae;Pseudanabaena;Pseudanabaena mucicola
Spiroplasma endosymbiont of Aspidapion aeneum 14 103 51 Bacteria Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Bacteria;Bacillati;Mycoplasmatota;Mollicutes;Entomoplasmatales;Spiroplasmataceae;Spiroplasma;Spiroplasma endosymbiont of Aspidapion aeneum
Aquifex aeolicus 0 8 3 Bacteria Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Aquifex Bacteria;Pseudomonadati;Aquificota;Aquificia;Aquificales;Aquificaceae;Aquifex;Aquifex aeolicus
Fulvivirga lutea 12 0 4 Bacteria Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Fulvivirga Bacteria;Pseudomonadati;Bacteroidota;Cytophagia;Cytophagales;Fulvivirgaceae;Fulvivirga;Fulvivirga lutea
Flavobacterium sp. ZE23DGlu08 0 12 3 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Flavobacterium;Flavobacterium sp. ZE23DGlu08
Polaribacter reichenbachii 43 0 24 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Polaribacter;Polaribacter reichenbachii
Tenacibaculum maritimum 0 9 1 Bacteria Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Bacteria;Pseudomonadati;Bacteroidota;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Tenacibaculum;Tenacibaculum maritimum
Celeribacter indicus 0 14 9 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Roseobacteraceae;Celeribacter;Celeribacter indicus
Qipengyuania soli 0 10 3 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Erythrobacteraceae;Qipengyuania;Qipengyuania soli
Polynucleobacter sp. MWH-UH25E 0 19 7 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Polynucleobacter;Polynucleobacter sp. MWH-UH25E
Escherichia coli 0 516 183 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Klebsiella pneumoniae 0 146 55 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella pneumoniae
Pseudoxanthomonas sp. SL93 10 35 17 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Pseudoxanthomonas;Pseudoxanthomonas sp. SL93
Stenotrophomonas maltophilia 27 140 63 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Lysobacterales;Lysobacteraceae;Stenotrophomonas;Stenotrophomonas maltophilia
Halomonas sp. JS92-SW72 0 55 18 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas;Halomonas sp. JS92-SW72
Pseudomonas sp. CIP-10 313 1843 895 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas sp. CIP-10
Vibrio anguillarum 55 234 123 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;Vibrio anguillarum
Vibrio cholerae 479 0 195 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;Vibrio cholerae
Vibrio parahaemolyticus 29 117 63 Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Bacteria;Pseudomonadati;Pseudomonadota;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;Vibrio parahaemolyticus
Deinococcus wulumuqiensis 22 66 37 Bacteria Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Bacteria;Thermotogati;Deinococcota;Deinococci;Deinococcales;Deinococcaceae;Deinococcus;Deinococcus wulumuqiensis
Homo sapiens 236770 212603 218031 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Homo Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens
Unknown 220728 161680 210292 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown
Human mastadenovirus C 0 17 7 Viruses Bamfordvirae Preplasmiviricota Tectiliviricetes Rowavirales Adenoviridae Mastadenovirus Viruses;Bamfordvirae;Preplasmiviricota;Tectiliviricetes;Rowavirales;Adenoviridae;Mastadenovirus;Human mastadenovirus C
Simplexvirus pteropodidalpha2 28183 178 16128 Viruses Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Viruses;Heunggongvirae;Peploviricota;Herviviricetes;Herpesvirales;Orthoherpesviridae;Simplexvirus;Simplexvirus pteropodidalpha2
Orthobunyavirus bertiogaense 86 524 239 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus bertiogaense
Orthobunyavirus gamboaense 1325 6464 3168 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus gamboaense
Orthobunyavirus manzanillaense 0 13 5 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus manzanillaense
Orthobunyavirus oropoucheense 24957 124115 61959 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus oropoucheense
Orthobunyavirus patoisense 19 54 33 Viruses Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales Peribunyaviridae Orthobunyavirus Viruses;Orthornavirae;Negarnaviricota;Ellioviricetes;Bunyavirales;Peribunyaviridae;Orthobunyavirus;Orthobunyavirus patoisense
Henipavirus cedarense 1065 3076 1791 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Henipavirus Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Henipavirus;Henipavirus cedarense
Vesiculovirus indiana 0 20 5 Viruses Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Viruses;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Rhabdoviridae;Vesiculovirus;Vesiculovirus indiana
Severe acute respiratory syndrome-related coronavirus 0 14 3 Viruses Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Viruses;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae;Betacoronavirus;Severe acute respiratory syndrome-related coronavirus

Alpha Diversity

Sample diversity indices. Indices are calculated from the original abundance table.

Indices SRR34843736 SRR34843737 SRR34843738 SRR34843739 total
Berger Parker index 0.74 0.46 0.41 0.57 0.42
Effective number of species 2.25 2.94 3.48 2.46 3.29
Fisher's alpha 4.79 4.25 4.24 4.63 3.89
Inverse Simpson's index 2.38 1.67 1.49 1.83 1.57
Pielou's evenness 0.29 0.34 0.32 0.43 0.3
Richness 16.0 23.0 47.0 8.0 50.0
Shannon diversity index 0.81 1.08 1.25 0.9 1.19
Simpson's index 0.42 0.6 0.67 0.55 0.64
Total counts 164672.0 541579.0 566497.0 225938.0 1498686.0
Note that the taxon 'Unknown' is considered as a unique taxon.

Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.

Note that Unknown taxon is considered as a unique taxon.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.

Note: When running the kraken2 approach bracken uses a threshold (`bracken_threshold`). Those taxa with lower counts are excluded from the results. This may affect the diversity metrics and plots, such as the rarefaction curves.

Software versions

Name Version
fastcat 0.22.1
taxonkit v0.20.0
csvtk v0.27.2
minimap2 2.28-r1209
samtools 1.22.1
Kraken 2.1.3
Bracken v3.0.1
seqkit v2.10.0
pandas 2.3.1
pysam 0.23.3
pysam-common 0.22.1
ezcharts-common 0.14.1
fastcat-common 0.22.0
samtools-common 1.21

Workflow parameters

Key Value
fastq /Users/gmboowa/bunya_by_barcode
bam None
classifier kraken2
sample None
sample_sheet /Users/gmboowa/bunya_by_barcode/sample_sheet.csv
exclude_host None
max_len None
min_len 0
min_read_qual None
threads 4
taxonomy None
reference None
ref2taxid None
database None
taxonomic_rank S
minimap2filter None
minimap2exclude False
keep_bam False
minimap2_by_reference False
min_percent_identity 90
min_ref_coverage 0
store_dir store_dir
out_dir /Users/gmboowa/bunya_out/wf_results
include_read_assignments False
igv False
output_unclassified False
bracken_length None
bracken_threshold 10
kraken2_memory_mapping True
kraken2_confidence 0
database_set Standard-8
database_sets {'ncbi_16s_18s': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_16s_18s.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ref2taxid.targloci.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}, 'ncbi_16s_18s_28s_ITS': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ref2taxid.ncbi_16s_18s_28s_ITS.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}, 'SILVA_138_1': {'database': None}, 'Standard-8': {'database': 'https://genome-idx.s3.amazonaws.com/kraken/k2_standard_08gb_20241228.tar.gz', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}, 'PlusPF-8': {'database': 'https://genome-idx.s3.amazonaws.com/kraken/k2_pluspf_08gb_20241228.tar.gz', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}, 'PlusPFP-8': {'database': 'https://genome-idx.s3.amazonaws.com/kraken/k2_pluspfp_08gb_20241228.tar.gz', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}}
amr False
amr_db resfinder
amr_minid 80
amr_mincov 80
analyse_unclassified False
abundance_threshold 0
n_taxa_barplot 9