Reproducible microbial GWAS from paired-end reads for one explicitly coded binary phenotype per run, including gene presence/absence GWAS, optional SNP marker GWAS, population-structure visualization, post-GWAS reference annotation, and ranked association reporting.
CRAB_OXA23_vs_CSAB_OXA23. Configured contrast: case (CRAB OXA23 positive) versus control (CSAB OXA23 negative). The report displays the metadata-derived biological contrast throughout the HTML: case (CRAB OXA23 positive) = 1 and control (CSAB OXA23 negative) = 0.| Class | Pyseer coding | Metadata column | Metadata value used for display | Samples | Report label |
|---|---|---|---|---|---|
| case | 1 | CRAB_OXA23_vs_CSAB_OXA23 | CRAB OXA23 positive | 50 | case (CRAB OXA23 positive) |
| control | 0 | CRAB_OXA23_vs_CSAB_OXA23 | CSAB OXA23 negative | 50 | control (CSAB OXA23 negative) |
| Interpretation issue | Current workflow/report behavior | Recommended interpretation |
|---|---|---|
| Phenotype clarity | One binary phenotype is tested per run using the phenotype TSV supplied to pyseer. | Use phenotype_name and phenotype_display_values to show the real biological contrast, for example specimen_source, HIV_status, MRSA_vs_MSSA, or rpoB_marker_status. |
| Gene presence/absence | The primary GWAS branch tests pangenome gene-cluster presence/absence with population-structure correction. | Interpret hits as gene-cluster associations with the configured phenotype, not as resistance genes unless the phenotype is explicitly an AMR contrast. |
| Point mutations | Point mutations are assessed only when the optional SNP GWAS branch is enabled. | Use do_snp_gwas=true for marker-defined or mutation-driven contrasts, then interpret SNP hits against the configured case/control labels. |
| Sample metadata and sampling design | The report displays the metadata-derived case/control labels, but metadata columns are not automatically modeled as covariates. | For phenotypes such as specimen source, HIV status, geography, host category, or marker carriage, check whether lineage, site, or sampling design explains the association. |
| Sequencing depth and assembly quality | The workflow generates FASTQ/assembly QC outputs, but read depth and assembly quality are not automatically modeled as covariates. | Filter low-depth or poor-quality samples and confirm that apparent gene absence is not caused by technical dropout. |
| Population structure and linkage | Mash distances/MDS and population-structure plots are generated to help assess lineage confounding. | If the configured phenotype clusters by lineage or outbreak, treat hits as candidate associations requiring validation rather than causal determinants. |
Checks sample names, paired FASTQs, group labels, and case (CRAB OXA23 positive)/control (CSAB OXA23 negative) balance.
Generates cleaned reads plus QC summaries.
Builds de novo genome assemblies using safe Cromwell memory handling.
Creates GFF annotations and pangenome gene matrices. Prokka remains the default; Bakta can be enabled with use_bakta=true.
Runs population-structure-aware gene and optional SNP association testing.
Maps prioritized pangenome/SNP markers to reference GenBank features where possible.
metric value phenotype CRAB_OXA23_vs_CSAB_OXA23 case_label case (CRAB OXA23 positive) (CRAB OXA23 positive) control_label control (CSAB OXA23 negative) (CSAB OXA23 negative) samples 100 pcoa1_variance_percent 23.8041 pcoa2_variance_percent 21.5832 pcoa1_plus_pcoa2_variance_percent 45.3873 case_within_mean_mash_distance 0.01285990932065306 control_within_mean_mash_distance 0.02226941914 between_group_mean_mash_distance 0.021777952936000003 between_within_mash_distance_ratio 1.2399 pcoa_centroid_separation_score 0.6261 method PCoA from square Mash distance matrix plus distance heatmap layman_pcoa_interpretation The PCoA plot shows moderate separation between the two phenotype groups (PCoA separation score 0.63; between/within Mash distance ratio 1.24). Some GWAS signals may still be influenced by lineage, so prioritize hits that remain biologically plausible and are not explained only by clustering.
metric value pvalues_detected 6828 points_drawn 5000 plot_label Gene presence/absence GWAS significant_points_at_alpha 1478 top_feature blaOXA~~~blaOXA23 top_pvalue 2.63e-16 top_minus_log10_pvalue 15.5800 qq_median_delta_observed_minus_expected -0.3011 qq_tail_delta_observed_minus_expected 11.4447 manhattan_type feature_index_not_genomic_coordinate qq_plot generated layman_manhattan_interpretation Each dot is a gene or gene cluster. Taller dots mean stronger evidence of difference between the two groups. In this run, 1478 of 6828 tested gene features crossed the alpha=0.05 line. The tallest signal was blaOXA~~~blaOXA23 (p=2.63e-16). Multiple significant dots may represent linked genes, mobile elements, or lineage effects, so review the priority table and population structure before interpreting them as independent causal markers. layman_qq_interpretation Most QQ-plot points are close to the expected background, but the upper tail rises above expectation. That pattern is consistent with a small number of candidate gene associations rather than general inflation. The candidate signals should still be checked against population structure and annotation confidence.
metric value plot_label SNP marker GWAS pvalues_detected 272531 significant_points_at_alpha 54473 top_marker NZ_CZWC01000019.1_19730_C_G top_position 19730 top_pvalue 6.73e-10 top_minus_log10_pvalue 9.1720 qq_median_delta_observed_minus_expected -0.3010 qq_tail_delta_observed_minus_expected 3.4355 points_drawn 5000 manhattan_type reference_coordinate_when_available qq_plot generated layman_manhattan_interpretation Each dot is a SNP marker placed by reference coordinate when available. 54473 of 272531 tested SNP markers crossed the alpha=0.05 line. The strongest marker was NZ_CZWC01000019.1_19730_C_G at position 19730 (p=6.73e-10). Clusters of SNP hits can reflect true mutation signal, lineage background, or linked variants, so review the top-hit table and PCoA/kinship plots before interpretation. layman_qq_interpretation The SNP QQ plot has a raised upper tail with less broad inflation across the rest of the plot. This pattern is compatible with a limited number of candidate SNP associations, but they still need biological validation and lineage checks.
putative solute-binding protein
chromosomal replication initiator protein DnaA
chromosomal replication initiator protein DnaA
chromosomal replication initiator protein DnaA
DNA topoisomerase (ATP-hydrolyzing) subunit B
| rank | feature id | variant id | feature type | contig | position | ref | alt | gene name | product | reference locus tag | reference gene | reference product | case (CRAB OXA23 positive) alt | case (CRAB OXA23 positive) total | case (CRAB OXA23 positive) frequency | control (CSAB OXA23 negative) alt | control (CSAB OXA23 negative) total | control (CSAB OXA23 negative) frequency | enriched in | beta | odds ratio | odds ratio ci95 | odds ratio ci95 lower | odds ratio ci95 upper | pyseer pvalue | q value | priority score | annotation source | reference location | qual | notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NZ_CZWC01000019.1_19730_C_G | NZ_CZWC01000019.1_19730_C_G | snp | NZ_CZWC01000019.1 | 19730 | C | G | A6739_RS00090 | putative solute-binding protein | A6739_RS00090 | putative solute-binding protein | 21 | 50 | 0.4200 | 7 | 50 | 0.1400 | cases (CRAB OXA23 positive) | 13.7 | 4.22712 | 1.629-10.97 | 1.62886 | 10.97 | 6.73e-10 | 9.1720 | reference_GenBank_coordinate_overlap | 19175..20179 | 4667.25 | SNP-level association; inspect population structure before causal interpretation. | ||
| 2 | NZ_CZWC01000063.1_7058_C_T | NZ_CZWC01000063.1_7058_C_T | snp | NZ_CZWC01000063.1 | 7058 | C | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 49 | 50 | 0.9800 | 10 | 50 | 0.2000 | cases (CRAB OXA23 positive) | 5.91 | 127.286 | 21.89-740.2 | 21.8877 | 740.218 | 4e-09 | 8.3979 | reference_GenBank_coordinate_overlap | 6793..8190 | 7050.51 | SNP-level association; inspect population structure before causal interpretation. | |
| 3 | NZ_CZWC01000038.1_7325_A_T | NZ_CZWC01000038.1_7325_A_T | snp | NZ_CZWC01000038.1 | 7325 | A | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 4 | 50 | 0.0800 | cases (CRAB OXA23 positive) | 11.7 | 6.94536 | 2.271-21.24 | 2.27094 | 21.2414 | 4.29e-09 | 8.3675 | reference_GenBank_coordinate_overlap | 6793..8190 | 1667.55 | SNP-level association; inspect population structure before causal interpretation. | |
| 4 | NZ_CZWC01000038.1_7778_A_T | NZ_CZWC01000038.1_7778_A_T | snp | NZ_CZWC01000038.1 | 7778 | A | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 4 | 50 | 0.0800 | cases (CRAB OXA23 positive) | 11.7 | 6.94536 | 2.271-21.24 | 2.27094 | 21.2414 | 4.29e-09 | 8.3675 | reference_GenBank_coordinate_overlap | 6793..8190 | 1106.67 | SNP-level association; inspect population structure before causal interpretation. | |
| 5 | NZ_CZWC01000063.1_12479_C_T | NZ_CZWC01000063.1_12479_C_T | snp | NZ_CZWC01000063.1 | 12479 | C | T | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | 48 | 50 | 0.9600 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 8.17 | 132.815 | 29.21-603.8 | 29.2135 | 603.828 | 5.09e-09 | 8.2933 | reference_GenBank_coordinate_overlap | 10586..13054 | 8155.72 | SNP-level association; inspect population structure before causal interpretation. | |
| 6 | NZ_CZWC01000063.1_12744_G_T | NZ_CZWC01000063.1_12744_G_T | snp | NZ_CZWC01000063.1 | 12744 | G | T | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | 48 | 50 | 0.9600 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 8.17 | 132.815 | 29.21-603.8 | 29.2135 | 603.828 | 5.09e-09 | 8.2933 | reference_GenBank_coordinate_overlap | 10586..13054 | 10925.3 | SNP-level association; inspect population structure before causal interpretation. | |
| 7 | NZ_CZWC01000035.1_1412_G_A | NZ_CZWC01000035.1_1412_G_A | snp | NZ_CZWC01000035.1 | 1412 | G | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 9.15 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 8.44e-09 | 8.0737 | reference_GenBank_coordinate_overlap | complement(681..1655) | 4782.14 | SNP-level association; inspect population structure before causal interpretation. | |
| 8 | NZ_CZWC01000066.1_5538_T_C | NZ_CZWC01000066.1_5538_T_C | snp | NZ_CZWC01000066.1 | 5538 | T | C | yidD | membrane protein insertion efficiency factorYidD | A6739_RS00030 | yidD | membrane protein insertion efficiency factorYidD | 21 | 50 | 0.4200 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 8.46 | 1.28035 | 0.5772-2.84 | 0.577189 | 2.84013 | 8.47e-09 | 8.0721 | reference_GenBank_coordinate_overlap | complement(5235..5555) | 6034.93 | SNP-level association; inspect population structure before causal interpretation. | |
| 9 | NZ_CZWC01000019.1_12349_A_G | NZ_CZWC01000019.1_12349_A_G | snp | NZ_CZWC01000019.1 | 12349 | A | G | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | 21 | 50 | 0.4200 | 8 | 50 | 0.1600 | cases (CRAB OXA23 positive) | 8.45 | 3.64407 | 1.448-9.168 | 1.44842 | 9.16811 | 9.63e-09 | 8.0164 | reference_GenBank_coordinate_overlap | 10586..13054 | 4345.41 | SNP-level association; inspect population structure before causal interpretation. | |
| 10 | NZ_CZWC01000096.1_38953_C_T | NZ_CZWC01000096.1_38953_C_T | snp | NZ_CZWC01000096.1 | 38953 | C | T | NZ_CZWC01000096.1_38953_C_T | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 4 | 50 | 0.0800 | cases (CRAB OXA23 positive) | 8.71 | 6.94536 | 2.271-21.24 | 2.27094 | 21.2414 | 1.42e-08 | 7.8477 | reference_GenBank_coordinate_overlap | 5288.92 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 11 | NZ_CZWC01000021.1_15709_G_A | NZ_CZWC01000021.1_15709_G_A | snp | NZ_CZWC01000021.1 | 15709 | G | A | abc-f | ribosomal protection-like ABC-F family protein | A6739_RS00075 | abc-f | ribosomal protection-like ABC-F family protein | 21 | 50 | 0.4200 | 10 | 50 | 0.2000 | cases (CRAB OXA23 positive) | 8.51 | 2.81114 | 1.169-6.759 | 1.16919 | 6.75898 | 1.68e-08 | 7.7747 | reference_GenBank_coordinate_overlap | complement(14377..16308) | 4716.9 | SNP-level association; inspect population structure before causal interpretation. | |
| 12 | NZ_CZWC01000034.1_48578_C_T | NZ_CZWC01000034.1_48578_C_T | snp | NZ_CZWC01000034.1 | 48578 | C | T | NZ_CZWC01000034.1_48578_C_T | intergenic_or_unannotated | intergenic_or_unannotated | 21 | 50 | 0.4200 | 10 | 50 | 0.2000 | cases (CRAB OXA23 positive) | 8.61 | 2.81114 | 1.169-6.759 | 1.16919 | 6.75898 | 1.74e-08 | 7.7595 | reference_GenBank_coordinate_overlap | 6152.43 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 13 | NZ_CZWC01000066.1_5733_T_C | NZ_CZWC01000066.1_5733_T_C | snp | NZ_CZWC01000066.1 | 5733 | T | C | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | 45 | 50 | 0.9000 | 9 | 50 | 0.1800 | cases (CRAB OXA23 positive) | 7.32 | 36.1388 | 11.66-112 | 11.6588 | 112.019 | 1.74e-08 | 7.7595 | reference_GenBank_coordinate_overlap | complement(5566..5958) | 6062.51 | SNP-level association; inspect population structure before causal interpretation. | |
| 14 | NZ_CZWC01000090.1_13035_A_G | NZ_CZWC01000090.1_13035_A_G | snp | NZ_CZWC01000090.1 | 13035 | A | G | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | 21 | 50 | 0.4200 | 11 | 50 | 0.2200 | cases (CRAB OXA23 positive) | 8.65 | 2.50332 | 1.059-5.918 | 1.05893 | 5.91784 | 1.77e-08 | 7.7520 | reference_GenBank_coordinate_overlap | 10586..13054 | 5682 | SNP-level association; inspect population structure before causal interpretation. | |
| 15 | NZ_CZWC01000037.1_1714_T_C | NZ_CZWC01000037.1_1714_T_C | snp | NZ_CZWC01000037.1 | 1714 | T | C | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | 50 | 50 | 1.0000 | 13 | 50 | 0.2600 | cases (CRAB OXA23 positive) | 5.25 | 280.556 | 16.16-4870 | 16.161 | 4870.44 | 1.78e-08 | 7.7496 | reference_GenBank_coordinate_overlap | 1713..1976 | 6703.64 | SNP-level association; inspect population structure before causal interpretation. | ||
| 16 | NZ_CZWC01000113.1_88469_G_T | NZ_CZWC01000113.1_88469_G_T | snp | NZ_CZWC01000113.1 | 88469 | G | T | NZ_CZWC01000113.1_88469_G_T | intergenic_or_unannotated | intergenic_or_unannotated | 43 | 50 | 0.8600 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 5.18 | 112.52 | 25.39-498.6 | 25.3907 | 498.638 | 1.8e-08 | 7.7447 | reference_GenBank_coordinate_overlap | 39018 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 17 | NZ_CZWC01000063.1_19261_T_C | NZ_CZWC01000063.1_19261_T_C | snp | NZ_CZWC01000063.1 | 19261 | T | C | A6739_RS00090 | putative solute-binding protein | A6739_RS00090 | putative solute-binding protein | 49 | 50 | 0.9800 | 11 | 50 | 0.2200 | cases (CRAB OXA23 positive) | 5.21 | 113.348 | 19.65-653.7 | 19.6549 | 653.667 | 1.91e-08 | 7.7190 | reference_GenBank_coordinate_overlap | 19175..20179 | 7522.38 | SNP-level association; inspect population structure before causal interpretation. | ||
| 18 | NZ_CZWC01000065.1_2919_T_G | NZ_CZWC01000065.1_2919_T_G | snp | NZ_CZWC01000065.1 | 2919 | T | G | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 44 | 50 | 0.8800 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 9.27 | 46.8698 | 14.64-150.1 | 14.6357 | 150.097 | 1.95e-08 | 7.7100 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 8116.95 | SNP-level association; inspect population structure before causal interpretation. | |
| 19 | NZ_CZWC01000065.1_12243_A_C | NZ_CZWC01000065.1_12243_A_C | snp | NZ_CZWC01000065.1 | 12243 | A | C | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | 44 | 50 | 0.8800 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 9.27 | 46.8698 | 14.64-150.1 | 14.6357 | 150.097 | 1.95e-08 | 7.7100 | reference_GenBank_coordinate_overlap | 10586..13054 | 8791.24 | SNP-level association; inspect population structure before causal interpretation. | |
| 20 | NZ_CZWC01000066.1_5874_G_A | NZ_CZWC01000066.1_5874_G_A | snp | NZ_CZWC01000066.1 | 5874 | G | A | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | 44 | 50 | 0.8800 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 9.27 | 46.8698 | 14.64-150.1 | 14.6357 | 150.097 | 1.95e-08 | 7.7100 | reference_GenBank_coordinate_overlap | complement(5566..5958) | 6567.79 | SNP-level association; inspect population structure before causal interpretation. | |
| 21 | NZ_CZWC01000037.1_6658_G_A | NZ_CZWC01000037.1_6658_G_A | snp | NZ_CZWC01000037.1 | 6658 | G | A | NZ_CZWC01000037.1_6658_G_A | intergenic_or_unannotated | intergenic_or_unannotated | 49 | 50 | 0.9800 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 5.55 | 225.923 | 36.57-1396 | 36.569 | 1395.75 | 2.1e-08 | 7.6778 | reference_GenBank_coordinate_overlap | 5445.9 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 22 | NZ_CZWC01000037.1_6667_A_G | NZ_CZWC01000037.1_6667_A_G | snp | NZ_CZWC01000037.1 | 6667 | A | G | NZ_CZWC01000037.1_6667_A_G | intergenic_or_unannotated | intergenic_or_unannotated | 49 | 50 | 0.9800 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 5.55 | 225.923 | 36.57-1396 | 36.569 | 1395.75 | 2.1e-08 | 7.6778 | reference_GenBank_coordinate_overlap | 5605.5 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 23 | NZ_CZWC01000065.1_19894_G_A | NZ_CZWC01000065.1_19894_G_A | snp | NZ_CZWC01000065.1 | 19894 | G | A | A6739_RS00090 | putative solute-binding protein | A6739_RS00090 | putative solute-binding protein | 45 | 50 | 0.9000 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 6.96 | 8.94805 | 3.158-25.35 | 3.15807 | 25.3533 | 2.23e-08 | 7.6517 | reference_GenBank_coordinate_overlap | 19175..20179 | 7993.31 | SNP-level association; inspect population structure before causal interpretation. | ||
| 24 | NZ_CZWC01000035.1_3624_A_G | NZ_CZWC01000035.1_3624_A_G | snp | NZ_CZWC01000035.1 | 3624 | A | G | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 50 | 50 | 1.0000 | 12 | 50 | 0.2400 | cases (CRAB OXA23 positive) | 5.19 | 311.08 | 17.86-5419 | 17.8564 | 5419.39 | 2.32e-08 | 7.6345 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 4178.5 | SNP-level association; inspect population structure before causal interpretation. | |
| 25 | NZ_CZWC01000065.1_21106_T_G | NZ_CZWC01000065.1_21106_T_G | snp | NZ_CZWC01000065.1 | 21106 | T | G | A6739_RS00100 | alpha/beta fold hydrolase | A6739_RS00100 | alpha/beta fold hydrolase | 45 | 50 | 0.9000 | 13 | 50 | 0.2600 | cases (CRAB OXA23 positive) | 7.66 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 2.35e-08 | 7.6289 | reference_GenBank_coordinate_overlap | complement(20695..21540) | 8435.64 | SNP-level association; inspect population structure before causal interpretation. | ||
| 26 | NZ_CZWC01000035.1_843_A_T | NZ_CZWC01000035.1_843_A_T | snp | NZ_CZWC01000035.1 | 843 | A | T | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 11949.9 | SNP-level association; inspect population structure before causal interpretation. | |
| 27 | NZ_CZWC01000035.1_984_T_A | NZ_CZWC01000035.1_984_T_A | snp | NZ_CZWC01000035.1 | 984 | T | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 3538.33 | SNP-level association; inspect population structure before causal interpretation. | |
| 28 | NZ_CZWC01000035.1_1088_A_G | NZ_CZWC01000035.1_1088_A_G | snp | NZ_CZWC01000035.1 | 1088 | A | G | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 5114.83 | SNP-level association; inspect population structure before causal interpretation. | |
| 29 | NZ_CZWC01000035.1_1127_G_A | NZ_CZWC01000035.1_1127_G_A | snp | NZ_CZWC01000035.1 | 1127 | G | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 4938.61 | SNP-level association; inspect population structure before causal interpretation. | |
| 30 | NZ_CZWC01000035.1_1180_A_G | NZ_CZWC01000035.1_1180_A_G | snp | NZ_CZWC01000035.1 | 1180 | A | G | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 4711.88 | SNP-level association; inspect population structure before causal interpretation. | |
| 31 | NZ_CZWC01000035.1_1334_G_A | NZ_CZWC01000035.1_1334_G_A | snp | NZ_CZWC01000035.1 | 1334 | G | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 5171.15 | SNP-level association; inspect population structure before causal interpretation. | |
| 32 | NZ_CZWC01000035.1_1352_G_A | NZ_CZWC01000035.1_1352_G_A | snp | NZ_CZWC01000035.1 | 1352 | G | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 4360.66 | SNP-level association; inspect population structure before causal interpretation. | |
| 33 | NZ_CZWC01000035.1_1373_G_A | NZ_CZWC01000035.1_1373_G_A | snp | NZ_CZWC01000035.1 | 1373 | G | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 5152.21 | SNP-level association; inspect population structure before causal interpretation. | |
| 34 | NZ_CZWC01000035.1_2256_A_G | NZ_CZWC01000035.1_2256_A_G | snp | NZ_CZWC01000035.1 | 2256 | A | G | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 3345.52 | SNP-level association; inspect population structure before causal interpretation. | |
| 35 | NZ_CZWC01000035.1_2796_C_T | NZ_CZWC01000035.1_2796_C_T | snp | NZ_CZWC01000035.1 | 2796 | C | T | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 5800.19 | SNP-level association; inspect population structure before causal interpretation. | |
| 36 | NZ_CZWC01000035.1_3039_A_G | NZ_CZWC01000035.1_3039_A_G | snp | NZ_CZWC01000035.1 | 3039 | A | G | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 6773.18 | SNP-level association; inspect population structure before causal interpretation. | |
| 37 | NZ_CZWC01000035.1_3072_G_A | NZ_CZWC01000035.1_3072_G_A | snp | NZ_CZWC01000035.1 | 3072 | G | A | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 6111.73 | SNP-level association; inspect population structure before causal interpretation. | |
| 38 | NZ_CZWC01000035.1_3168_C_G | NZ_CZWC01000035.1_3168_C_G | snp | NZ_CZWC01000035.1 | 3168 | C | G | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 6866.19 | SNP-level association; inspect population structure before causal interpretation. | |
| 39 | NZ_CZWC01000035.1_3195_C_T | NZ_CZWC01000035.1_3195_C_T | snp | NZ_CZWC01000035.1 | 3195 | C | T | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 6203.9 | SNP-level association; inspect population structure before causal interpretation. | |
| 40 | NZ_CZWC01000035.1_4011_T_A | NZ_CZWC01000035.1_4011_T_A | snp | NZ_CZWC01000035.1 | 4011 | T | A | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 9286.93 | SNP-level association; inspect population structure before causal interpretation. | |
| 41 | NZ_CZWC01000037.1_2390_G_A | NZ_CZWC01000037.1_2390_G_A | snp | NZ_CZWC01000037.1 | 2390 | G | A | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 4889.38 | SNP-level association; inspect population structure before causal interpretation. | |
| 42 | NZ_CZWC01000037.1_5975_C_T | NZ_CZWC01000037.1_5975_C_T | snp | NZ_CZWC01000037.1 | 5975 | C | T | NZ_CZWC01000037.1_5975_C_T | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 5404.05 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 43 | NZ_CZWC01000037.1_6649_A_C | NZ_CZWC01000037.1_6649_A_C | snp | NZ_CZWC01000037.1 | 6649 | A | C | NZ_CZWC01000037.1_6649_A_C | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 5376.95 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 44 | NZ_CZWC01000037.1_7392_G_A | NZ_CZWC01000037.1_7392_G_A | snp | NZ_CZWC01000037.1 | 7392 | G | A | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 6059.38 | SNP-level association; inspect population structure before causal interpretation. | |
| 45 | NZ_CZWC01000037.1_7585_C_G | NZ_CZWC01000037.1_7585_C_G | snp | NZ_CZWC01000037.1 | 7585 | C | G | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 7038.71 | SNP-level association; inspect population structure before causal interpretation. | |
| 46 | NZ_CZWC01000037.1_7974_G_A | NZ_CZWC01000037.1_7974_G_A | snp | NZ_CZWC01000037.1 | 7974 | G | A | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 6313.86 | SNP-level association; inspect population structure before causal interpretation. | |
| 47 | NZ_CZWC01000037.1_9501_C_T | NZ_CZWC01000037.1_9501_C_T | snp | NZ_CZWC01000037.1 | 9501 | C | T | recF | DNA replication/repair protein RecF | A6739_RS00055 | recF | DNA replication/repair protein RecF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 9451..10533 | 4991.52 | SNP-level association; inspect population structure before causal interpretation. | |
| 48 | NZ_CZWC01000038.1_1503_A_G | NZ_CZWC01000038.1_1503_A_G | snp | NZ_CZWC01000038.1 | 1503 | A | G | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(681..1655) | 72751.2 | SNP-level association; inspect population structure before causal interpretation. | |
| 49 | NZ_CZWC01000038.1_1710_T_C | NZ_CZWC01000038.1_1710_T_C | snp | NZ_CZWC01000038.1 | 1710 | T | C | NZ_CZWC01000038.1_1710_T_C | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 20945.6 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 50 | NZ_CZWC01000038.1_2279_G_T | NZ_CZWC01000038.1_2279_G_T | snp | NZ_CZWC01000038.1 | 2279 | G | T | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 4160.87 | SNP-level association; inspect population structure before causal interpretation. | |
| 51 | NZ_CZWC01000038.1_2660_T_C | NZ_CZWC01000038.1_2660_T_C | snp | NZ_CZWC01000038.1 | 2660 | T | C | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(2023..3378) | 4813.33 | SNP-level association; inspect population structure before causal interpretation. | |
| 52 | NZ_CZWC01000038.1_3836_G_A | NZ_CZWC01000038.1_3836_G_A | snp | NZ_CZWC01000038.1 | 3836 | G | A | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 7705.2 | SNP-level association; inspect population structure before causal interpretation. | |
| 53 | NZ_CZWC01000038.1_3881_C_T | NZ_CZWC01000038.1_3881_C_T | snp | NZ_CZWC01000038.1 | 3881 | C | T | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 9508.07 | SNP-level association; inspect population structure before causal interpretation. | |
| 54 | NZ_CZWC01000038.1_4022_C_G | NZ_CZWC01000038.1_4022_C_G | snp | NZ_CZWC01000038.1 | 4022 | C | G | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 9520.44 | SNP-level association; inspect population structure before causal interpretation. | |
| 55 | NZ_CZWC01000038.1_4029_C_G | NZ_CZWC01000038.1_4029_C_G | snp | NZ_CZWC01000038.1 | 4029 | C | G | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 10508.1 | SNP-level association; inspect population structure before causal interpretation. | |
| 56 | NZ_CZWC01000038.1_4232_A_G | NZ_CZWC01000038.1_4232_A_G | snp | NZ_CZWC01000038.1 | 4232 | A | G | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 5766.27 | SNP-level association; inspect population structure before causal interpretation. | |
| 57 | NZ_CZWC01000038.1_4481_C_T | NZ_CZWC01000038.1_4481_C_T | snp | NZ_CZWC01000038.1 | 4481 | C | T | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 7418.55 | SNP-level association; inspect population structure before causal interpretation. | |
| 58 | NZ_CZWC01000038.1_5406_G_A | NZ_CZWC01000038.1_5406_G_A | snp | NZ_CZWC01000038.1 | 5406 | G | A | yidD | membrane protein insertion efficiency factorYidD | A6739_RS00030 | yidD | membrane protein insertion efficiency factorYidD | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(5235..5555) | 5461.66 | SNP-level association; inspect population structure before causal interpretation. | |
| 59 | NZ_CZWC01000038.1_6098_T_C | NZ_CZWC01000038.1_6098_T_C | snp | NZ_CZWC01000038.1 | 6098 | T | C | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | complement(5988..6122) | 7090.21 | SNP-level association; inspect population structure before causal interpretation. | |
| 60 | NZ_CZWC01000038.1_6617_C_G | NZ_CZWC01000038.1_6617_C_G | snp | NZ_CZWC01000038.1 | 6617 | C | G | NZ_CZWC01000038.1_6617_C_G | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6377.54 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 61 | NZ_CZWC01000038.1_6678_A_C | NZ_CZWC01000038.1_6678_A_C | snp | NZ_CZWC01000038.1 | 6678 | A | C | NZ_CZWC01000038.1_6678_A_C | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6972.97 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 62 | NZ_CZWC01000038.1_6683_A_G | NZ_CZWC01000038.1_6683_A_G | snp | NZ_CZWC01000038.1 | 6683 | A | G | NZ_CZWC01000038.1_6683_A_G | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6929.52 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 63 | NZ_CZWC01000038.1_6740_T_C | NZ_CZWC01000038.1_6740_T_C | snp | NZ_CZWC01000038.1 | 6740 | T | C | NZ_CZWC01000038.1_6740_T_C | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 9153.84 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 64 | NZ_CZWC01000038.1_6893_C_G | NZ_CZWC01000038.1_6893_C_G | snp | NZ_CZWC01000038.1 | 6893 | C | G | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 6411.13 | SNP-level association; inspect population structure before causal interpretation. | |
| 65 | NZ_CZWC01000038.1_6947_C_T | NZ_CZWC01000038.1_6947_C_T | snp | NZ_CZWC01000038.1 | 6947 | C | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4929.53 | SNP-level association; inspect population structure before causal interpretation. | |
| 66 | NZ_CZWC01000038.1_7100_C_T | NZ_CZWC01000038.1_7100_C_T | snp | NZ_CZWC01000038.1 | 7100 | C | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4760.02 | SNP-level association; inspect population structure before causal interpretation. | |
| 67 | NZ_CZWC01000038.1_7139_A_G | NZ_CZWC01000038.1_7139_A_G | snp | NZ_CZWC01000038.1 | 7139 | A | G | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4255.39 | SNP-level association; inspect population structure before causal interpretation. | |
| 68 | NZ_CZWC01000038.1_7166_T_C | NZ_CZWC01000038.1_7166_T_C | snp | NZ_CZWC01000038.1 | 7166 | T | C | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 3952.05 | SNP-level association; inspect population structure before causal interpretation. | |
| 69 | NZ_CZWC01000038.1_7181_C_T | NZ_CZWC01000038.1_7181_C_T | snp | NZ_CZWC01000038.1 | 7181 | C | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4335.97 | SNP-level association; inspect population structure before causal interpretation. | |
| 70 | NZ_CZWC01000038.1_7211_T_C | NZ_CZWC01000038.1_7211_T_C | snp | NZ_CZWC01000038.1 | 7211 | T | C | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4312.53 | SNP-level association; inspect population structure before causal interpretation. | |
| 71 | NZ_CZWC01000038.1_7217_G_T | NZ_CZWC01000038.1_7217_G_T | snp | NZ_CZWC01000038.1 | 7217 | G | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4411.3 | SNP-level association; inspect population structure before causal interpretation. | |
| 72 | NZ_CZWC01000038.1_7229_A_C | NZ_CZWC01000038.1_7229_A_C | snp | NZ_CZWC01000038.1 | 7229 | A | C | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4211.25 | SNP-level association; inspect population structure before causal interpretation. | |
| 73 | NZ_CZWC01000038.1_7236_G_A | NZ_CZWC01000038.1_7236_G_A | snp | NZ_CZWC01000038.1 | 7236 | G | A | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4070.07 | SNP-level association; inspect population structure before causal interpretation. | |
| 74 | NZ_CZWC01000038.1_7827_G_A | NZ_CZWC01000038.1_7827_G_A | snp | NZ_CZWC01000038.1 | 7827 | G | A | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 2795.97 | SNP-level association; inspect population structure before causal interpretation. | |
| 75 | NZ_CZWC01000038.1_7841_G_A | NZ_CZWC01000038.1_7841_G_A | snp | NZ_CZWC01000038.1 | 7841 | G | A | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 3180.1 | SNP-level association; inspect population structure before causal interpretation. | |
| 76 | NZ_CZWC01000038.1_7872_T_C | NZ_CZWC01000038.1_7872_T_C | snp | NZ_CZWC01000038.1 | 7872 | T | C | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4291.35 | SNP-level association; inspect population structure before causal interpretation. | |
| 77 | NZ_CZWC01000038.1_7913_T_C | NZ_CZWC01000038.1_7913_T_C | snp | NZ_CZWC01000038.1 | 7913 | T | C | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 4815.53 | SNP-level association; inspect population structure before causal interpretation. | |
| 78 | NZ_CZWC01000038.1_7937_A_G | NZ_CZWC01000038.1_7937_A_G | snp | NZ_CZWC01000038.1 | 7937 | A | G | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 5274.09 | SNP-level association; inspect population structure before causal interpretation. | |
| 79 | NZ_CZWC01000038.1_7949_C_T | NZ_CZWC01000038.1_7949_C_T | snp | NZ_CZWC01000038.1 | 7949 | C | T | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 5187.06 | SNP-level association; inspect population structure before causal interpretation. | |
| 80 | NZ_CZWC01000038.1_7970_A_G | NZ_CZWC01000038.1_7970_A_G | snp | NZ_CZWC01000038.1 | 7970 | A | G | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 5326.47 | SNP-level association; inspect population structure before causal interpretation. | |
| 81 | NZ_CZWC01000038.1_8155_T_C | NZ_CZWC01000038.1_8155_T_C | snp | NZ_CZWC01000038.1 | 8155 | T | C | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6793..8190 | 6287.75 | SNP-level association; inspect population structure before causal interpretation. | |
| 82 | NZ_CZWC01000038.1_8231_T_G | NZ_CZWC01000038.1_8231_T_G | snp | NZ_CZWC01000038.1 | 8231 | T | G | NZ_CZWC01000038.1_8231_T_G | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 6042.82 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 83 | NZ_CZWC01000038.1_8305_C_T | NZ_CZWC01000038.1_8305_C_T | snp | NZ_CZWC01000038.1 | 8305 | C | T | dnaN | DNA polymerase III subunit beta | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 8288..9436 | 5926.64 | SNP-level association; inspect population structure before causal interpretation. | |
| 84 | NZ_CZWC01000112.1_86722_T_A | NZ_CZWC01000112.1_86722_T_A | snp | NZ_CZWC01000112.1 | 86722 | T | A | NZ_CZWC01000112.1_86722_T_A | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 5167.6 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 85 | NZ_CZWC01000112.1_86826_A_T | NZ_CZWC01000112.1_86826_A_T | snp | NZ_CZWC01000112.1 | 86826 | A | T | NZ_CZWC01000112.1_86826_A_T | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 5443.04 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 86 | NZ_CZWC01000112.1_86883_C_A | NZ_CZWC01000112.1_86883_C_A | snp | NZ_CZWC01000112.1 | 86883 | C | A | NZ_CZWC01000112.1_86883_C_A | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 5229.7 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 87 | NZ_CZWC01000112.1_86913_C_T | NZ_CZWC01000112.1_86913_C_T | snp | NZ_CZWC01000112.1 | 86913 | C | T | NZ_CZWC01000112.1_86913_C_T | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 4819.18 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 88 | NZ_CZWC01000112.1_87081_C_T | NZ_CZWC01000112.1_87081_C_T | snp | NZ_CZWC01000112.1 | 87081 | C | T | NZ_CZWC01000112.1_87081_C_T | intergenic_or_unannotated | intergenic_or_unannotated | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.3 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.5e-08 | 7.6021 | reference_GenBank_coordinate_overlap | 3855.92 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 89 | NZ_CZWC01000110.1_34651_A_G | NZ_CZWC01000110.1_34651_A_G | snp | NZ_CZWC01000110.1 | 34651 | A | G | NZ_CZWC01000110.1_34651_A_G | intergenic_or_unannotated | intergenic_or_unannotated | 48 | 50 | 0.9600 | 7 | 50 | 0.1400 | cases (CRAB OXA23 positive) | 7.19 | 112.52 | 25.39-498.6 | 25.3907 | 498.638 | 2.54e-08 | 7.5952 | reference_GenBank_coordinate_overlap | 6186.5 | SNP-level association; inspect population structure before causal interpretation. | ||||
| 90 | NZ_CZWC01000035.1_4284_T_C | NZ_CZWC01000035.1_4284_T_C | snp | NZ_CZWC01000035.1 | 4284 | T | C | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 6 | 50 | 0.1200 | cases (CRAB OXA23 positive) | 10.1 | 4.60151 | 1.701-12.45 | 1.70072 | 12.45 | 2.57e-08 | 7.5901 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 6502.31 | SNP-level association; inspect population structure before causal interpretation. | |
| 91 | NZ_CZWC01000007.1_4609_C_A | NZ_CZWC01000007.1_4609_C_A | snp | NZ_CZWC01000007.1 | 4609 | C | A | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 20 | 50 | 0.4000 | 9 | 50 | 0.1800 | cases (CRAB OXA23 positive) | 7.35 | 2.93615 | 1.194-7.223 | 1.19355 | 7.22296 | 2.62e-08 | 7.5817 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 7269.99 | SNP-level association; inspect population structure before causal interpretation. | |
| 92 | NZ_CZWC01000037.1_1498_G_A | NZ_CZWC01000037.1_1498_G_A | snp | NZ_CZWC01000037.1 | 1498 | G | A | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 21 | 50 | 0.4200 | 8 | 50 | 0.1600 | cases (CRAB OXA23 positive) | 8.34 | 3.64407 | 1.448-9.168 | 1.44842 | 9.16811 | 2.82e-08 | 7.5498 | reference_GenBank_coordinate_overlap | complement(681..1655) | 5506.29 | SNP-level association; inspect population structure before causal interpretation. | |
| 93 | NZ_CZWC01000037.1_1585_C_T | NZ_CZWC01000037.1_1585_C_T | snp | NZ_CZWC01000037.1 | 1585 | C | T | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 21 | 50 | 0.4200 | 9 | 50 | 0.1800 | cases (CRAB OXA23 positive) | 8.34 | 3.18376 | 1.297-7.813 | 1.29741 | 7.81274 | 2.82e-08 | 7.5498 | reference_GenBank_coordinate_overlap | complement(681..1655) | 5505.34 | SNP-level association; inspect population structure before causal interpretation. | |
| 94 | NZ_CZWC01000037.1_5188_A_G | NZ_CZWC01000037.1_5188_A_G | snp | NZ_CZWC01000037.1 | 5188 | A | G | yidC | membrane protein insertase YidC | A6739_RS00025 | yidC | membrane protein insertase YidC | 21 | 50 | 0.4200 | 9 | 50 | 0.1800 | cases (CRAB OXA23 positive) | 8.34 | 3.18376 | 1.297-7.813 | 1.29741 | 7.81274 | 2.82e-08 | 7.5498 | reference_GenBank_coordinate_overlap | complement(3469..5229) | 8113.65 | SNP-level association; inspect population structure before causal interpretation. | |
| 95 | NZ_CZWC01000037.1_1795_A_C | NZ_CZWC01000037.1_1795_A_C | snp | NZ_CZWC01000037.1 | 1795 | A | C | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | 21 | 50 | 0.4200 | 8 | 50 | 0.1600 | cases (CRAB OXA23 positive) | 7.64 | 3.64407 | 1.448-9.168 | 1.44842 | 9.16811 | 2.91e-08 | 7.5361 | reference_GenBank_coordinate_overlap | 1713..1976 | 6577.64 | SNP-level association; inspect population structure before causal interpretation. | ||
| 96 | NZ_CZWC01000037.1_1834_C_T | NZ_CZWC01000037.1_1834_C_T | snp | NZ_CZWC01000037.1 | 1834 | C | T | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | 21 | 50 | 0.4200 | 8 | 50 | 0.1600 | cases (CRAB OXA23 positive) | 7.64 | 3.64407 | 1.448-9.168 | 1.44842 | 9.16811 | 2.91e-08 | 7.5361 | reference_GenBank_coordinate_overlap | 1713..1976 | 6154.36 | SNP-level association; inspect population structure before causal interpretation. | ||
| 97 | NZ_CZWC01000037.1_7278_C_G | NZ_CZWC01000037.1_7278_C_G | snp | NZ_CZWC01000037.1 | 7278 | C | G | dnaA | chromosomal replication initiator protein DnaA | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | 21 | 50 | 0.4200 | 8 | 50 | 0.1600 | cases (CRAB OXA23 positive) | 7.64 | 3.64407 | 1.448-9.168 | 1.44842 | 9.16811 | 2.91e-08 | 7.5361 | reference_GenBank_coordinate_overlap | 6793..8190 | 5408.72 | SNP-level association; inspect population structure before causal interpretation. | |
| 98 | NZ_CZWC01000042.1_928_A_G | NZ_CZWC01000042.1_928_A_G | snp | NZ_CZWC01000042.1 | 928 | A | G | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.2 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.96e-08 | 7.5287 | reference_GenBank_coordinate_overlap | complement(681..1655) | 3048.55 | SNP-level association; inspect population structure before causal interpretation. | |
| 99 | NZ_CZWC01000094.1_21063_A_T | NZ_CZWC01000094.1_21063_A_T | snp | NZ_CZWC01000094.1 | 21063 | A | T | A6739_RS00100 | alpha/beta fold hydrolase | A6739_RS00100 | alpha/beta fold hydrolase | 20 | 50 | 0.4000 | 5 | 50 | 0.1000 | cases (CRAB OXA23 positive) | 10.2 | 5.56036 | 1.952-15.84 | 1.95158 | 15.8423 | 2.96e-08 | 7.5287 | reference_GenBank_coordinate_overlap | complement(20695..21540) | 2318.48 | SNP-level association; inspect population structure before causal interpretation. | ||
| 100 | NZ_CZWC01000065.1_25270_T_C | NZ_CZWC01000065.1_25270_T_C | snp | NZ_CZWC01000065.1 | 25270 | T | C | NZ_CZWC01000065.1_25270_T_C | intergenic_or_unannotated | intergenic_or_unannotated | 45 | 50 | 0.9000 | 10 | 50 | 0.2000 | cases (CRAB OXA23 positive) | 7 | 31.9091 | 10.46-97.33 | 10.4616 | 97.3264 | 3.06e-08 | 7.5143 | reference_GenBank_coordinate_overlap | 9259.62 | SNP-level association; inspect population structure before causal interpretation. |
Showing 100 of 100 rows.
metric value snp_gwas_status prioritized pyseer_snp_rows 272531 ranked_snp_features 272531 significant_snp_features 54473 alpha 0.05
Recombination intervals: 0. Output files: Abaumannii_CRAB_OXA23pos_vs_CSAB_OXA23neg_50v50_SNP_gubbins_summary.tsv, Abaumannii_CRAB_OXA23pos_vs_CSAB_OXA23neg_50v50_SNP_gubbins.filtered_polymorphic_sites.fasta, Abaumannii_CRAB_OXA23pos_vs_CSAB_OXA23neg_50v50_SNP_gubbins.recombination_predictions.gff, and Abaumannii_CRAB_OXA23pos_vs_CSAB_OXA23neg_50v50_SNP_gubbins.log.
metric value gubbins_status not_run recommendation Optional. Enable for recombining bacteria or strong lineage/recombination concerns; usually not required as a default for MTBC/clonal analyses. usage_note Gubbins not requested. Primary SNP GWAS used the unfiltered Snippy/core VCF when SNP GWAS was enabled.
tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345)
alpha/beta fold hydrolase
iron-sulfur cluster insertion protein ErpA
cytochrome b562
DsbC family protein
| rank | feature id | feature type | display name | display label | gene name | product | reference locus tag | reference gene | reference product | annotation confidence | reference identity | reference coverage | interpretation note | annotation evidence | case (CRAB OXA23 positive) present | case (CRAB OXA23 positive) total | case (CRAB OXA23 positive) frequency | control (CSAB OXA23 negative) present | control (CSAB OXA23 negative) total | control (CSAB OXA23 negative) frequency | enriched in | beta | odds ratio | odds ratio ci95 | odds ratio ci95 lower | odds ratio ci95 upper | pyseer pvalue | q value | priority score | annotation source | reference match type | reference location | annotation note | cluster member ids | notes | display product |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | blaOXA~~~blaOXA23 | gene_presence_absence | blaOXA;blaOXA-23 | blaOXA~~~blaOXA23 | A6739_RS00110 | none confidence | blaOXA;blaOXA-23 | OXA-23 family carbapenem-hydrolyzing class D beta-lactamase;OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 | A6739_RS00110 | tyrS | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | none | 22.06 | 1.93 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=22.06; coverage=1.93 | 50 | 50 | 1.0000 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 8.62 | 10201 | 198.5-5.242e+05 | 198.519 | 524185 | 2.63e-16 | 31.8965 | Panaroo/Bakta+GenBank | nucleotide_similarity | 22857..24089 | matched_representative_sequence=blaOXA~~~blaOXA23 | ANNMME_04096;BIMHKD_04132;BKKCFL_03769;CHLMLA_03847;CLAKBE_03911;COHMLF_01621;DEPLCM_04126;DHMCKF_03721;EDMCBA_03845;EKEFBI_03097;EKJIGM_03750;EMLMMI_03100;ENEAAA_03842;FAMOPM_03619;FDMKAG_03800;FKBKHM_03691;FNOCKN_04022;GAEFLF_03820;GEIJOK_03810;GGMMDJ_03860;GJMGGM_04001;GLMFPI_02936;GMFAHH_03899;HENMEN_03849;HKLMOD_03826;HMEENH_03945;IILCLB_03880;JAKFAI_03844;JEJHBL_03804;JFJBEF_03832 | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | ||
| 2 | group_6798 | gene_presence_absence | group_6798 | group_6798 | A6739_RS00100 | none confidence | group_6798 | alpha/beta fold hydrolase | A6739_RS00100 | alpha/beta fold hydrolase | none | 35.04 | 1.33 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=35.04; coverage=1.33 | 50 | 50 | 1.0000 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 8.62 | 10201 | 198.5-5.242e+05 | 198.519 | 524185 | 2.63e-16 | 31.8965 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_6798 | ANNMME_04095;BIMHKD_04131;BKKCFL_03770;CHLMLA_03848;CLAKBE_03910;COHMLF_01622;DEPLCM_04127;DHMCKF_03722;EDMCBA_03844;EKEFBI_03096;EKJIGM_03751;EMLMMI_03099;ENEAAA_03843;FAMOPM_03620;FDMKAG_03801;FKBKHM_03692;FNOCKN_04023;GAEFLF_03821;GEIJOK_03809;GGMMDJ_03859;GJMGGM_04000;GLMFPI_02935;GMFAHH_03900;HENMEN_03848;HKLMOD_03827;HMEENH_03946;IILCLB_03881;JAKFAI_03845;JEJHBL_03805;JFJBEF_03831 | alpha/beta fold hydrolase | |||
| 3 | group_6974 | gene_presence_absence | erpA | group_6974 | A6739_RS00095 | none confidence | erpA | iron-sulfur cluster insertion protein ErpA | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 34.57 | 2.04 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.57; coverage=2.04 | 37 | 50 | 0.7400 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 4.39 | 280.556 | 16.16-4870 | 16.161 | 4870.44 | 2.47e-07 | 17.7394 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_6974 | ANNMME_04094;BIMHKD_04130;BKKCFL_03771;CHLMLA_03849;CLAKBE_03909;DEPLCM_04128;EDMCBA_03843;ENEAAA_03844;FAMOPM_03621;FDMKAG_03802;FKBKHM_03693;GAEFLF_03822;GEIJOK_03808;GGMMDJ_03858;GMFAHH_03898;HENMEN_03847;HMEENH_03947;IILCLB_03882;JAKFAI_03853;JEJHBL_03806;JFJBEF_03830;JOLCOG_03814;KDMBIP_03708;LPJHGC_03780;MOFKMO_03839;NCLOCB_03845;NLLOAD_04129;NMFHKC_03897;NMOMMB_03913;OBKBPL_03940 | iron-sulfur cluster insertion protein ErpA | ||
| 4 | group_1072 | gene_presence_absence | cybC | group_1072 | A6739_RS00065 | none confidence | cybC | HTH tetR-type domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 39.55 | 1.87 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=39.55; coverage=1.87 | 0 | 50 | 0.0000 | 31 | 50 | 0.6200 | controls (CSAB OXA23 negative) | -5.1 | 0.00612918 | 0.0003573-0.1051 | 0.000357306 | 0.105139 | 3.13e-07 | 16.8545 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_1072 | AEAJCM_02724;AEPHHL_00567;AGNLLF_00009;AOBNGK_02616;APKFKK_02786;BCAJEO_02991;CMDNKJ_01400;EAFGGO_03731;EOONHM_00424;FEECBJ_00824;GLGIIC_00364;GMMHOP_00006;GPCEGG_02892;HIOOEO_02713;IJKCGG_00009;JBKHKM_00750;KAIBOE_04024;KNPJLO_00324;LNGIEH_00523;MOFLDA_00571;NADHLL_02115;NANECH_01324;NGKKDC_01072;NKDDBA_02775;OBMFOM_00518;OIJAEJ_02683;OLJICN_03518;OMAPCN_02699;OMJIED_01293;PAJDEF_02776 | cytochrome b562 | ||
| 5 | ridA | gene_presence_absence | ridA | ridA | A6739_RS00005 | none confidence | ridA | RidA family protein | A6739_RS00005 | DsbC family protein | none | 37.22 | 2.29 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.22; coverage=2.29 | 0 | 50 | 0.0000 | 30 | 50 | 0.6000 | controls (CSAB OXA23 negative) | -5.11 | 0.00665476 | 0.0003883-0.114 | 0.000388329 | 0.114042 | 5.44e-07 | 16.4958 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=ridA | AEAJCM_02723;AEPHHL_00566;AGNLLF_00008;AOBNGK_02617;APKFKK_02787;BCAJEO_02992;CMDNKJ_01399;EAFGGO_03732;EOONHM_00425;GLGIIC_00363;GMMHOP_00005;GPCEGG_02891;HIOOEO_02712;IJKCGG_00008;JBKHKM_00751;KAIBOE_04025;KNPJLO_00325;LNGIEH_00524;MOFLDA_00572;NADHLL_02114;NANECH_01323;NGKKDC_01073;NKDDBA_02776;OBMFOM_00517;OIJAEJ_02682;OLJICN_03519;OMAPCN_02698;OMJIED_01292;PAJDEF_02777;PDBBOI_02809 | DsbC family protein | |||
| 6 | group_6742 | gene_presence_absence | group_6742 | group_6742 | A6739_RS00085 | none confidence | group_6742 | hypothetical protein;Nucleoid-associated protein | A6739_RS00085 | putative solute-binding protein | none | 35.04 | 1.05 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=35.04; coverage=1.05 | 32 | 50 | 0.6400 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 4.27 | 177.432 | 10.33-3047 | 10.331 | 3047.34 | 1.53e-06 | 16.2864 | Panaroo/Bakta+GenBank | nucleotide_similarity | 17825..18832 | matched_representative_sequence=group_6742 | ANNMME_00704;BIMHKD_00230;CHLMLA_02687;DEPLCM_00542;EDMCBA_00705;ENEAAA_00440;FDMKAG_01028;FKBKHM_03452;FNOCKN_00733;GEIJOK_00055;GJMGGM_00702;GMFAHH_00378;HENMEN_02573;HKLMOD_00410;IILCLB_00961;JAKFAI_00863;JEJHBL_00055;JGKJBK_00188;KDMBIP_03045;LPJHGC_00055;MDFJDP_00200;NCLOCB_00705;NLLOAD_00542;NMFHKC_01029;OBKBPL_02706;OCKDLB_00055;OILKJE_00682;OMJNPG_00289;OOAOIA_01029;PDKMKB_01030 | putative solute-binding protein | |||
| 7 | group_3104 | gene_presence_absence | rnpA | group_3104 | A6739_RS00035 | none confidence | rnpA | Phage-related membrane protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 32.27 | 0.83 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.27; coverage=0.83 | 32 | 50 | 0.6400 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 4.27 | 177.432 | 10.33-3047 | 10.331 | 3047.34 | 1.53e-06 | 16.2864 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_3104 | ANNMME_00703;BIMHKD_00231;CHLMLA_02686;DEPLCM_00541;EDMCBA_00706;ENEAAA_00441;FDMKAG_01027;FKBKHM_03453;FNOCKN_00732;GEIJOK_00056;GJMGGM_00703;GMFAHH_00379;HENMEN_02574;HKLMOD_00411;IILCLB_00962;JAKFAI_00862;JEJHBL_00056;JGKJBK_00189;KDMBIP_03044;LPJHGC_00056;MDFJDP_00199;NCLOCB_00706;NLLOAD_00541;NMFHKC_01028;OBKBPL_02707;OCKDLB_00056;OILKJE_00683;OMJNPG_00288;OOAOIA_01028;PDKMKB_01029 | ribonuclease P protein component | ||
| 8 | group_2979 | gene_presence_absence | erpA | group_2979 | A6739_RS00095 | none confidence | erpA | HTH tetR-type domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 33.97 | 1.82 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.97; coverage=1.82 | 0 | 50 | 0.0000 | 28 | 50 | 0.5600 | controls (CSAB OXA23 negative) | -5 | 0.00781657 | 0.0004568-0.1338 | 0.000456753 | 0.133768 | 1.46e-06 | 15.8349 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2979 | ACIDLP_03511;AEAJCM_02707;AEPHHL_02594;AGNLLF_02408;AMBHCN_01180;APKFKK_02651;BCAJEO_02675;CNACEH_02768;DPCGGD_02294;EAFGGO_02954;FEECBJ_03563;GLGIIC_01653;GPCEGG_02506;HIOOEO_02696;IJKCGG_03021;JMGEHL_02856;KAIBOE_04045;LABLAA_02705;LAEAMC_03094;NADHLL_00759;NGKKDC_02663;NJCICH_02901;NKDDBA_02640;OIJAEJ_02666;OLJICN_02482;OMAPCN_02627;PAJDEF_02641;PDBBOI_02611 | iron-sulfur cluster insertion protein ErpA | ||
| 9 | hscC | gene_presence_absence | hscC | hscC | A6739_RS00100 | none confidence | hscC | Molecular chaperone HscC | A6739_RS00100 | alpha/beta fold hydrolase | none | 26.31 | 0.53 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=26.31; coverage=0.53 | 0 | 50 | 0.0000 | 29 | 50 | 0.5800 | controls (CSAB OXA23 negative) | -4.98 | 0.00721598 | 0.0004214-0.1236 | 0.000421407 | 0.123563 | 2.26e-06 | 15.7605 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=hscC | AEAJCM_03214;AEPHHL_00718;AGNLLF_00160;AOBNGK_00112;APKFKK_03407;BCAJEO_03232;BDOIEG_00929;EAFGGO_00917;EOONHM_00274;GLGIIC_00515;GMMHOP_00156;GPCEGG_03119;HIOOEO_03399;JBKHKM_00587;KAIBOE_03988;KNPJLO_03612;LABLAA_01378;LAEAMC_00220;LNGIEH_00374;MOFLDA_00421;NGKKDC_00921;NJCICH_01461;NKDDBA_03396;OBMFOM_00681;OIJAEJ_03368;OLJICN_00363;OMAPCN_03189;PAJDEF_03358;PDBBOI_03335 | alpha/beta fold hydrolase | |||
| 10 | group_2610 | gene_presence_absence | phzF; | group_2610 | A6739_RS00050 | none confidence | phzF; | Phenazine biosynthesis protein PhzF;hypothetical protein | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 33.87 | 1.45 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.87; coverage=1.45 | 50 | 50 | 1.0000 | 17 | 50 | 0.3400 | cases (CRAB OXA23 positive) | 4.34 | 193.343 | 11.24-3325 | 11.2409 | 3325.47 | 9.14e-06 | 15.6341 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_2610 | AHMIAP_03307;AIGIAA_00355;ANGLGM_01645;ANNMME_01836;BDOIEG_02865;BIMHKD_00044;BKKCFL_03193;CHLMLA_00904;CLAKBE_02996;CLAKBE_03392;COHMLF_03299;DEPLCM_00728;DHMCKF_03293;DLCDOA_01300;EDMCBA_01153;EKEFBI_00068;EKJIGM_01816;EMLMMI_00068;ENEAAA_00814;FAMOPM_01943;FDMKAG_02588;FEECBJ_03012;FKBKHM_03646;FNOCKN_01989;GAEFLF_02846;GAEFLF_03346;GEIJOK_02697;GGMMDJ_02481;GJMGGM_01943;GLGIIC_01649 | DNA polymerase III subunit beta | ||
| 11 | group_2596 | gene_presence_absence | group_2596 | group_2596 | A6739_RS00005 | none confidence | group_2596 | HTH lysR-type domain-containing protein;hypothetical protein | A6739_RS00005 | DsbC family protein | none | 37.82 | 1.04 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.82; coverage=1.04 | 50 | 50 | 1.0000 | 17 | 50 | 0.3400 | cases (CRAB OXA23 positive) | 4.34 | 193.343 | 11.24-3325 | 11.2409 | 3325.47 | 9.14e-06 | 15.6341 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2596 | AHMIAP_03306;AIGIAA_00356;ANGLGM_01646;ANNMME_01835;BDOIEG_02864;BIMHKD_00043;BKKCFL_03132;CHLMLA_00905;CLAKBE_02995;COHMLF_03300;DEPLCM_00729;DHMCKF_03294;DLCDOA_01301;EDMCBA_01154;EKEFBI_00067;EKJIGM_01815;EMLMMI_00067;ENEAAA_00813;FAMOPM_01942;FDMKAG_02587;FEECBJ_03013;FKBKHM_03647;FNOCKN_01988;GAEFLF_02847;GEIJOK_02696;GGMMDJ_02480;GJMGGM_01944;GLGIIC_01650;GLMFPI_01764;GMFAHH_01093 | DsbC family protein | |||
| 12 | group_6743 | gene_presence_absence | group_6743 | group_6743 | A6739_RS00005 | none confidence | group_6743 | hypothetical protein;DUF4435 domain-containing protein | A6739_RS00005 | DsbC family protein | none | 32.23 | 0.71 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.23; coverage=0.71 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_6743 | ANGLGM_02784;ANNMME_00702;BIMHKD_00232;BKKCFL_01771;CHLMLA_02685;CLAKBE_02086;DEPLCM_00540;EDMCBA_00707;ENEAAA_00442;FAMOPM_02007;FDMKAG_01026;FKBKHM_03628;FNOCKN_00731;GAEFLF_02089;GEIJOK_00057;GJMGGM_00704;GMFAHH_00380;HENMEN_02575;HKLMOD_00412;IILCLB_00963;JAKFAI_00861;JEJHBL_00057;JFJBEF_02464;JGKJBK_00190;JOLCOG_02056;KDMBIP_03043;LPJHGC_00057;MDFJDP_00198;MOFKMO_02235;NCLOCB_00707 | DsbC family protein | |||
| 13 | group_5867 | gene_presence_absence | rpmH | group_5867 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 37.20 | 2.51 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.20; coverage=2.51 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_5867 | ANGLGM_02779;ANNMME_00697;BIMHKD_00237;BKKCFL_01776;CHLMLA_02680;CLAKBE_02081;DEPLCM_00535;EDMCBA_00712;ENEAAA_00447;FAMOPM_02012;FDMKAG_01021;FKBKHM_03623;FNOCKN_00726;GAEFLF_02084;GEIJOK_00062;GJMGGM_00709;GMFAHH_00385;HENMEN_02580;HKLMOD_00417;IILCLB_00968;JAKFAI_00856;JEJHBL_00062;JFJBEF_02459;JGKJBK_00195;JOLCOG_02051;KDMBIP_03038;LPJHGC_00062;MDFJDP_00193;MOFKMO_02240;NCLOCB_00712 | 50S ribosomal protein L34 | ||
| 14 | group_4130 | gene_presence_absence | tatD | group_4130 | A6739_RS00055 | none confidence | tatD | TatD family hydrolase | A6739_RS00055 | recF | DNA replication/repair protein RecF | none | 37.39 | 1.35 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.39; coverage=1.35 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9451..10533 | matched_representative_sequence=group_4130 | ANGLGM_02780;ANNMME_00698;BIMHKD_00236;BKKCFL_01775;CHLMLA_02681;CLAKBE_02082;DEPLCM_00536;EDMCBA_00711;ENEAAA_00446;FAMOPM_02011;FDMKAG_01022;FKBKHM_03624;FNOCKN_00727;GAEFLF_02085;GEIJOK_00061;GJMGGM_00708;GMFAHH_00384;HENMEN_02579;HKLMOD_00416;IILCLB_00967;JAKFAI_00857;JEJHBL_00061;JFJBEF_02460;JGKJBK_00194;JOLCOG_02052;KDMBIP_03039;LPJHGC_00061;MDFJDP_00194;MOFKMO_02239;NCLOCB_00711 | DNA replication/repair protein RecF | ||
| 15 | group_4063 | gene_presence_absence | cybC | group_4063 | A6739_RS00065 | none confidence | cybC | DUF5610 domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 33.33 | 1.31 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.33; coverage=1.31 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_4063 | ANGLGM_02782;ANNMME_00700;BIMHKD_00234;BKKCFL_01773;CHLMLA_02683;CLAKBE_02084;DEPLCM_00538;EDMCBA_00709;ENEAAA_00444;FAMOPM_02009;FDMKAG_01024;FKBKHM_03626;FNOCKN_00729;GAEFLF_02087;GEIJOK_00059;GJMGGM_00706;GMFAHH_00382;HENMEN_02577;HKLMOD_00414;IILCLB_00965;JAKFAI_00859;JEJHBL_00059;JFJBEF_02462;JGKJBK_00192;JOLCOG_02054;KDMBIP_03041;LPJHGC_00059;MDFJDP_00196;MOFKMO_02237;NCLOCB_00709 | cytochrome b562 | ||
| 16 | group_2369 | gene_presence_absence | group_2369 | group_2369 | A6739_RS00100 | none confidence | group_2369 | 7-cyano-7-deazaguanine synthase | A6739_RS00100 | alpha/beta fold hydrolase | none | 29.98 | 0.75 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=29.98; coverage=0.75 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_2369 | ANGLGM_02781;ANNMME_00699;BIMHKD_00235;BKKCFL_01774;CHLMLA_02682;CLAKBE_02083;DEPLCM_00537;EDMCBA_00710;ENEAAA_00445;FAMOPM_02010;FDMKAG_01023;FKBKHM_03625;FNOCKN_00728;GAEFLF_02086;GEIJOK_00060;GJMGGM_00707;GMFAHH_00383;HENMEN_02578;HKLMOD_00415;IILCLB_00966;JAKFAI_00858;JEJHBL_00060;JFJBEF_02461;JGKJBK_00193;JOLCOG_02053;KDMBIP_03040;LPJHGC_00060;MDFJDP_00195;MOFKMO_02238;NCLOCB_00710 | alpha/beta fold hydrolase | |||
| 17 | group_1038 | gene_presence_absence | mnmE | group_1038 | A6739_RS00020 | none confidence | mnmE | KAP NTPase domain-containing protein | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 25.46 | 0.61 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=25.46; coverage=0.61 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2023..3378) | matched_representative_sequence=group_1038 | ANGLGM_02783;ANNMME_00701;BIMHKD_00233;BKKCFL_01772;CHLMLA_02684;CLAKBE_02085;DEPLCM_00539;EDMCBA_00708;ENEAAA_00443;FAMOPM_02008;FDMKAG_01025;FKBKHM_03627;FNOCKN_00730;GAEFLF_02088;GEIJOK_00058;GJMGGM_00705;GMFAHH_00381;HENMEN_02576;HKLMOD_00413;IILCLB_00964;JAKFAI_00860;JEJHBL_00058;JFJBEF_02463;JGKJBK_00191;JOLCOG_02055;KDMBIP_03042;LPJHGC_00058;MDFJDP_00197;MOFKMO_02236;NCLOCB_00708 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 18 | group_7386 | gene_presence_absence | abc-f | group_7386 | A6739_RS00075 | none confidence | abc-f | hypothetical protein;molecular chaperone;J domain-containing protein | A6739_RS00075 | abc-f | ribosomal protection-like ABC-F family protein | none | 27.17 | 0.61 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.17; coverage=0.61 | 0 | 50 | 0.0000 | 28 | 50 | 0.5600 | controls (CSAB OXA23 negative) | -4.24 | 0.00781657 | 0.0004568-0.1338 | 0.000456753 | 0.133768 | 5.67e-05 | 14.2457 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(14377..16308) | matched_representative_sequence=group_7386 | AEAJCM_02499;AEAJCM_03215;AEPHHL_00719;AGNLLF_00161;AOBNGK_00113;APKFKK_02567;APKFKK_03408;BCAJEO_02543;BCAJEO_03233;BDOIEG_00930;EAFGGO_00916;EOONHM_00273;GLGIIC_00516;GMMHOP_00157;GPCEGG_02345;GPCEGG_03120;HIOOEO_02488;HIOOEO_03400;JBKHKM_00586;LABLAA_01379;LAEAMC_00221;LNGIEH_00373;MOFLDA_00420;NADHLL_03426;NGKKDC_00920;NJCICH_01460;NKDDBA_02555;NKDDBA_03397;OBMFOM_00682;OIJAEJ_02458 | ribosomal protection-like ABC-F family protein | ||
| 19 | group_6799 | gene_presence_absence | yopX | group_6799 | A6739_RS00080 | none confidence | yopX | YopX protein domain-containing protein | A6739_RS00080 | putative solute-binding protein | none | 36.57 | 1.96 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.57; coverage=1.96 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -5.16 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 1.35e-06 | 14.1960 | Panaroo/Bakta+GenBank | nucleotide_similarity | 16565..17569 | matched_representative_sequence=group_6799 | AEPHHL_02070;AGNLLF_02684;DLCDOA_02796;EOONHM_01407;GLGIIC_02476;GMMHOP_01641;JBKHKM_03693;KAIBOE_03973;LNGIEH_02289;MOFLDA_01218;NGKKDC_02373;NJCICH_03028;OBMFOM_03711;OLJICN_02125 | putative solute-binding protein | |||
| 20 | group_2705 | gene_presence_absence | rnpA | group_2705 | A6739_RS00035 | none confidence | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 37.36 | 1.80 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.36; coverage=1.80 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -5.16 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 1.35e-06 | 14.1960 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_2705 | AEPHHL_02068;AGNLLF_02682;DLCDOA_02798;EOONHM_01406;GLGIIC_02477;GMMHOP_01640;JBKHKM_03694;KAIBOE_03975;LNGIEH_02290;MOFLDA_01219;NGKKDC_02375;NJCICH_03030;OBMFOM_03710;OLJICN_02123 | ribonuclease P protein component | ||
| 21 | group_2631 | gene_presence_absence | abc-f | group_2631 | A6739_RS00075 | none confidence | abc-f | Betaine/carnitine/choline transporter (BCCT) family transporter | A6739_RS00075 | abc-f | ribosomal protection-like ABC-F family protein | none | 26.99 | 0.89 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=26.99; coverage=0.89 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (CRAB OXA23 positive) | 8.9 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 1.61e-07 | 14.1094 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(14377..16308) | matched_representative_sequence=group_2631 | AHMIAP_01331;AIGIAA_02836;CHLMLA_02698;COHMLF_00667;DHMCKF_00974;EDMCBA_02679;EKEFBI_02306;EKJIGM_00999;EMLMMI_02310;ENEAAA_02813;FDMKAG_02369;FKBKHM_01914;FNOCKN_00050;GEIJOK_02369;GGMMDJ_01052;GJMGGM_00228;GMFAHH_02704;HENMEN_02668;HKLMOD_02576;HMEENH_00536;IILCLB_00259;JAKFAI_02861;JDELMK_00050;JEJHBL_02154;JFJBEF_01670;JGKJBK_01711;JMCNGE_02121;JOLCOG_01009;KAIBOE_02413;KDMBIP_01656 | ribosomal protection-like ABC-F family protein | ||
| 22 | group_2693 | gene_presence_absence | cybC | group_2693 | A6739_RS00065 | none confidence | cybC | Phage head morphogenesis domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 35.70 | 0.83 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.70; coverage=0.83 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_2693 | AEAJCM_02218;AEPHHL_01015;APKFKK_02302;BCAJEO_02346;EAFGGO_00673;EOONHM_01193;GMMHOP_01821;GPCEGG_02148;HIOOEO_02207;KAIBOE_03660;LABLAA_00932;MOFLDA_01265;NGKKDC_00623;NKDDBA_02206;OIJAEJ_02177;OLJICN_00066;OMAPCN_02193;OMJIED_03257;PAJDEF_02207;PDBBOI_02175 | cytochrome b562 | ||
| 23 | group_2386 | gene_presence_absence | group_2386 | group_2386 | A6739_RS00015 | none confidence | group_2386 | DUF3168 domain-containing protein | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 37.71 | 1.75 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.71; coverage=1.75 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_2386 | AEAJCM_02226;AEPHHL_01024;APKFKK_02310;BCAJEO_02354;EAFGGO_00665;EOONHM_01185;GMMHOP_01813;GPCEGG_02156;HIOOEO_02215;KAIBOE_03669;LABLAA_00923;MOFLDA_01257;NGKKDC_00614;NKDDBA_02214;OIJAEJ_02185;OLJICN_00057;OMAPCN_02201;OMJIED_03267;PAJDEF_02215;PDBBOI_02167 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 24 | group_2274 | gene_presence_absence | erpA | group_2274 | A6739_RS00095 | none confidence | erpA | HK97 gp10 family phage protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 33.59 | 1.75 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.59; coverage=1.75 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2274 | AEAJCM_02225;AEPHHL_01023;APKFKK_02309;BCAJEO_02353;EAFGGO_00666;EOONHM_01186;GMMHOP_01814;GPCEGG_02155;HIOOEO_02214;KAIBOE_03668;LABLAA_00924;MOFLDA_01258;NGKKDC_00615;NKDDBA_02213;OIJAEJ_02184;OLJICN_00058;OMAPCN_02200;OMJIED_03266;PAJDEF_02214;PDBBOI_02168 | iron-sulfur cluster insertion protein ErpA | ||
| 25 | group_2019 | gene_presence_absence | group_2019 | group_2019 | A6739_RS00005 | none confidence | group_2019 | hypothetical protein;Glutamate 5-kinase | A6739_RS00005 | DsbC family protein | none | 38.65 | 2.80 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.65; coverage=2.80 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2019 | AEAJCM_02224;AEPHHL_01021;APKFKK_02308;BCAJEO_02352;EAFGGO_00667;EOONHM_01188;GMMHOP_01816;GPCEGG_02154;HIOOEO_02213;KAIBOE_03666;LABLAA_00926;MOFLDA_01260;NGKKDC_00617;NKDDBA_02212;OIJAEJ_02183;OLJICN_00060;OMAPCN_02199;OMJIED_03264;PAJDEF_02213;PDBBOI_02169 | DsbC family protein | |||
| 26 | group_6913 | gene_presence_absence | dmeF | group_6913 | A6739_RS00010 | none confidence | dmeF | hypothetical protein;GmrSD restriction endonucleases N-terminal domain-containing protein | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | none | 38.08 | 1.03 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.08; coverage=1.03 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(681..1655) | matched_representative_sequence=group_6913 | ANGLGM_01092;ANNMME_02126;BIMHKD_01022;BKKCFL_00646;CLAKBE_00109;DEPLCM_00110;EKEFBI_01536;EMLMMI_01306;FAMOPM_00262;FDMKAG_01766;GAEFLF_00262;GEIJOK_02001;HMEENH_00377;IILCLB_01762;JEJHBL_01766;JFJBEF_00264;JGKJBK_01156;JGKJBK_01157;JOLCOG_00575;KDMBIP_01474;LPJHGC_00798;MDFJDP_01262;MDFJDP_01263;MOFKMO_00600;NLLOAD_00284;NMFHKC_02037;NMOMMB_00262;OBKBPL_01379;OCKDLB_02038;OMJNPG_01811 | CDF family Co(II)/Ni(II) efflux transporterDmeF | ||
| 27 | group_4986 | gene_presence_absence | erpA | group_4986 | A6739_RS00095 | none confidence | erpA | Fimbrial protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 40.74 | 1.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.74; coverage=1.69 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_4986 | ANGLGM_01034;ANNMME_02068;BIMHKD_00964;BKKCFL_00588;CLAKBE_00167;DEPLCM_00168;EKEFBI_01478;EMLMMI_01364;FAMOPM_00204;FDMKAG_01824;GAEFLF_00204;GEIJOK_01943;HMEENH_00319;IILCLB_01704;JEJHBL_01824;JFJBEF_00206;JGKJBK_01098;JOLCOG_00633;KDMBIP_01416;LPJHGC_00740;MDFJDP_01204;MOFKMO_00658;NLLOAD_00226;NMFHKC_01979;NMOMMB_00204;OBKBPL_01321;OCKDLB_01980;OMJNPG_01869;OOAOIA_01368;PDKMKB_01159 | iron-sulfur cluster insertion protein ErpA | ||
| 28 | group_4765 | gene_presence_absence | group_4765 | group_4765 | A6739_RS00070 | none confidence | group_4765 | Lipoprotein | A6739_RS00070 | VTT domain-containing protein | none | 37.67 | 1.90 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.67; coverage=1.90 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_4765 | ANGLGM_00955;ANNMME_00812;BIMHKD_00885;BKKCFL_00433;CLAKBE_00246;DEPLCM_00247;EKEFBI_01399;EMLMMI_01443;FAMOPM_00125;FDMKAG_01903;GAEFLF_00125;GEIJOK_01864;HMEENH_00240;IILCLB_00772;JEJHBL_01903;JFJBEF_00127;JGKJBK_01019;JOLCOG_00712;KDMBIP_01337;LPJHGC_00661;MDFJDP_01125;MOFKMO_00737;NLLOAD_00147;NMFHKC_01900;NMOMMB_00125;OBKBPL_01242;OCKDLB_01901;OMJNPG_00829;OOAOIA_01290;PDKMKB_01238 | VTT domain-containing protein | |||
| 29 | group_4672 | gene_presence_absence | group_4672 | group_4672 | A6739_RS00005 | none confidence | group_4672 | HTH tetR-type domain-containing protein | A6739_RS00005 | DsbC family protein | none | 41.16 | 1.63 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=41.16; coverage=1.63 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_4672 | ANGLGM_00952;ANNMME_00815;BIMHKD_00882;BKKCFL_00436;CLAKBE_00249;DEPLCM_00250;EKEFBI_01396;EMLMMI_01446;FAMOPM_00122;FDMKAG_01906;GAEFLF_00122;GEIJOK_01861;HMEENH_00237;IILCLB_00769;JEJHBL_01906;JFJBEF_00124;JGKJBK_01016;JOLCOG_00715;KDMBIP_01334;LPJHGC_00658;MDFJDP_01122;MOFKMO_00740;NLLOAD_00144;NMFHKC_01897;NMOMMB_00122;OBKBPL_01239;OCKDLB_01898;OMJNPG_00832;OOAOIA_01287;PDKMKB_01241 | DsbC family protein | |||
| 30 | group_4434 | gene_presence_absence | group_4434 | group_4434 | A6739_RS00005 | none confidence | group_4434 | Nucleotidyltransferase | A6739_RS00005 | DsbC family protein | none | 42.86 | 1.42 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=42.86; coverage=1.42 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_4434 | ANGLGM_01093;ANNMME_02127;BIMHKD_01023;BKKCFL_00647;CLAKBE_00108;DEPLCM_00109;EKEFBI_01537;EMLMMI_01305;FAMOPM_00263;FDMKAG_01765;GAEFLF_00263;GEIJOK_02002;HMEENH_00378;IILCLB_01763;JEJHBL_01765;JFJBEF_00265;JGKJBK_01158;JOLCOG_00574;KDMBIP_01475;LPJHGC_00799;MDFJDP_01264;MOFKMO_00599;NLLOAD_00285;NMFHKC_02038;NMOMMB_00263;OBKBPL_01380;OCKDLB_02039;OMJNPG_01810;OOAOIA_01427;PDKMKB_01100 | DsbC family protein | |||
| 31 | group_2655 | gene_presence_absence | group_2655 | group_2655 | A6739_RS00005 | none confidence | group_2655 | hypothetical protein;Abasic site processing protein | A6739_RS00005 | DsbC family protein | none | 33.66 | 1.40 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=33.66; coverage=1.40 | 0 | 50 | 0.0000 | 11 | 50 | 0.2200 | controls (CSAB OXA23 negative) | -5.27 | 0.0340077 | 0.001944-0.595 | 0.00194385 | 0.594968 | 3.64e-06 | 13.3169 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2655 | AEPHHL_01588;AEPHHL_01589;AGNLLF_02993;AGNLLF_02994;BDOIEG_02089;CNACEH_02189;JBKHKM_01691;JMGEHL_02003;KAIBOE_03910;KAIBOE_03911;LNGIEH_02759;LNGIEH_02760;NGKKDC_01667;NGKKDC_01668;OBMFOM_01719;OLJICN_01664;OLJICN_01665 | DsbC family protein | |||
| 32 | group_7489 | gene_presence_absence | group_7489 | group_7489 | A6739_RS00015 | none confidence | group_7489 | Thioesterase | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 38.13 | 1.72 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.13; coverage=1.72 | 50 | 50 | 1.0000 | 29 | 50 | 0.5800 | cases (CRAB OXA23 positive) | 4.35 | 73.6102 | 4.299-1260 | 4.29877 | 1260.47 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_7489 | ACIDLP_01295;AHMIAP_01382;AIGIAA_03052;AMBHCN_00546;ANGLGM_00890;ANNMME_01076;BDOIEG_00984;BIMHKD_01493;BKKCFL_00384;CHLMLA_02750;CLAKBE_00593;CMDNKJ_02236;CNACEH_01833;COHMLF_00616;DEPLCM_01482;DHMCKF_01025;DLCDOA_00574;DPCGGD_01108;EDMCBA_03624;EKEFBI_02265;EKJIGM_01050;EMLMMI_02269;ENEAAA_03631;EOONHM_00219;FAMOPM_00755;FDMKAG_02410;FKBKHM_00206;FNOCKN_00101;GAEFLF_00757;GEIJOK_02328 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 33 | group_1250 | gene_presence_absence | cybC | group_1250 | A6739_RS00065 | none confidence | cybC | HTH tetR-type domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 32.36 | 1.42 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.36; coverage=1.42 | 50 | 50 | 1.0000 | 29 | 50 | 0.5800 | cases (CRAB OXA23 positive) | 4.35 | 73.6102 | 4.299-1260 | 4.29877 | 1260.47 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_1250 | ACIDLP_01294;AHMIAP_01381;AIGIAA_03051;AMBHCN_00545;ANGLGM_00891;ANNMME_01077;BDOIEG_00985;BIMHKD_01492;BKKCFL_00385;CHLMLA_02749;CLAKBE_00592;CMDNKJ_02237;CNACEH_01834;COHMLF_00617;DEPLCM_01483;DHMCKF_01024;DLCDOA_00573;DPCGGD_01107;EDMCBA_03623;EKEFBI_02266;EKJIGM_01049;EMLMMI_02270;ENEAAA_03630;EOONHM_00218;FAMOPM_00756;FDMKAG_02409;FKBKHM_00205;FNOCKN_00100;GAEFLF_00758;GEIJOK_02329 | cytochrome b562 | ||
| 34 | group_4597 | gene_presence_absence | rnpA | group_4597 | A6739_RS00035 | none confidence | rnpA | Flavodoxin-like fold domain-containing protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 36.53 | 1.56 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.53; coverage=1.56 | 0 | 50 | 0.0000 | 21 | 50 | 0.4200 | controls (CSAB OXA23 negative) | -4.35 | 0.0135851 | 0.0007934-0.2326 | 0.000793358 | 0.232624 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_4597 | AEAJCM_02553;AEPHHL_00772;AGNLLF_00214;AOBNGK_00168;APKFKK_02513;BCAJEO_02597;EAFGGO_00862;FEECBJ_00621;GPCEGG_02399;HIOOEO_02542;LABLAA_01432;LAEAMC_00274;NANECH_01592;NGKKDC_00867;NJCICH_01406;NKDDBA_02501;OIJAEJ_02512;OLJICN_00309;OMAPCN_02528;PAJDEF_02542;PDBBOI_02512 | ribonuclease P protein component | ||
| 35 | group_3740 | gene_presence_absence | recF | group_3740 | A6739_RS00055 | none confidence | recF | HTH lysR-type domain-containing protein | A6739_RS00055 | recF | DNA replication/repair protein RecF | none | 35.15 | 1.23 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.15; coverage=1.23 | 0 | 50 | 0.0000 | 21 | 50 | 0.4200 | controls (CSAB OXA23 negative) | -4.35 | 0.0135851 | 0.0007934-0.2326 | 0.000793358 | 0.232624 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9451..10533 | matched_representative_sequence=group_3740 | AEAJCM_02554;AEPHHL_00773;AGNLLF_00215;AOBNGK_00169;APKFKK_02512;BCAJEO_02598;EAFGGO_00861;FEECBJ_00620;GPCEGG_02400;HIOOEO_02543;LABLAA_01433;LAEAMC_00275;NANECH_01593;NGKKDC_00866;NJCICH_01405;NKDDBA_02500;OIJAEJ_02513;OLJICN_00308;OMAPCN_02529;PAJDEF_02543;PDBBOI_02513 | DNA replication/repair protein RecF | ||
| 36 | group_7091 | gene_presence_absence | rpmH | group_7091 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 47.20 | 3.43 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=47.20; coverage=3.43 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_7091 | AIGIAA_03064;ANNMME_00710;BIMHKD_00224;CHLMLA_02105;DEPLCM_00548;EDMCBA_00703;EKEFBI_00247;EMLMMI_00247;ENEAAA_00438;FDMKAG_01030;FKBKHM_03450;FNOCKN_00735;GEIJOK_00053;GJMGGM_00700;GMFAHH_00376;HENMEN_02075;HKLMOD_00408;HMEENH_02119;IILCLB_00959;JAKFAI_00865;JDELMK_01989;JEJHBL_00053;JGKJBK_00186;KDMBIP_03047;LPJHGC_00053;MDFJDP_00202;NCLOCB_00703;NLLOAD_00548;NMFHKC_01031;OBKBPL_02704 | 50S ribosomal protein L34 | ||
| 37 | group_6247 | gene_presence_absence | group_6247 | group_6247 | A6739_RS00015 | none confidence | group_6247 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 37.13 | 3.33 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.13; coverage=3.33 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_6247 | AIGIAA_03072;ANNMME_00719;BIMHKD_00215;CHLMLA_02097;DEPLCM_00557;EDMCBA_00695;EKEFBI_00239;EMLMMI_00239;ENEAAA_00430;FDMKAG_01038;FKBKHM_03442;FNOCKN_00743;GEIJOK_00045;GJMGGM_00692;GMFAHH_00368;HENMEN_02067;HKLMOD_00400;HMEENH_02127;IILCLB_00951;JAKFAI_00873;JDELMK_01997;JEJHBL_00045;JGKJBK_00178;KDMBIP_03055;LPJHGC_00045;MDFJDP_00210;NCLOCB_00695;NLLOAD_00557;NMFHKC_01039;OBKBPL_02696 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 38 | group_5866 | gene_presence_absence | erpA | group_5866 | A6739_RS00095 | none confidence | erpA | iron-sulfur cluster insertion protein ErpA | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 40.98 | 3.58 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.98; coverage=3.58 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_5866 | AIGIAA_03066;ANNMME_00712;BIMHKD_00222;CHLMLA_02103;DEPLCM_00550;EDMCBA_00701;EKEFBI_00245;EMLMMI_00245;ENEAAA_00436;FDMKAG_01032;FKBKHM_03448;FNOCKN_00737;GEIJOK_00051;GJMGGM_00698;GMFAHH_00374;HENMEN_02073;HKLMOD_00406;HMEENH_02121;IILCLB_00957;JAKFAI_00867;JDELMK_01991;JEJHBL_00051;JGKJBK_00184;KDMBIP_03049;LPJHGC_00051;MDFJDP_00204;NCLOCB_00701;NLLOAD_00550;NMFHKC_01033;OBKBPL_02702 | iron-sulfur cluster insertion protein ErpA | ||
| 39 | group_1099 | gene_presence_absence | dnaN | group_1099 | A6739_RS00050 | none confidence | dnaN | DNA polymerase III subunit beta | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 29.01 | 0.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.01; coverage=0.69 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_1099 | AIGIAA_03063;ANNMME_00709;BIMHKD_00225;CHLMLA_02106;CHLMLA_02688;DEPLCM_00547;EDMCBA_00704;EKEFBI_00248;EMLMMI_00248;ENEAAA_00439;FDMKAG_01029;FKBKHM_03451;FNOCKN_00734;GEIJOK_00054;GJMGGM_00701;GMFAHH_00377;HENMEN_02572;HKLMOD_00409;HMEENH_02118;IILCLB_00960;JAKFAI_00864;JDELMK_01988;JEJHBL_00054;JGKJBK_00187;KDMBIP_03046;LPJHGC_00054;MDFJDP_00201;NCLOCB_00704;NLLOAD_00547;NMFHKC_01030 | DNA polymerase III subunit beta | ||
| 40 | group_657 | gene_presence_absence | rpmH | group_657 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 56.00 | 6.67 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=56.00; coverage=6.67 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_6572 | AIGIAA_03067;ANNMME_00713;BIMHKD_00221;CHLMLA_02102;DEPLCM_00551;EDMCBA_00700;EKEFBI_00244;EMLMMI_00244;ENEAAA_00435;FDMKAG_01033;FKBKHM_03447;FNOCKN_00738;GEIJOK_00050;GJMGGM_00697;GMFAHH_00373;HENMEN_02072;HKLMOD_00405;HMEENH_02122;IILCLB_00956;JAKFAI_00868;JDELMK_01992;JEJHBL_00050;JGKJBK_00183;KDMBIP_03050;LPJHGC_00050;MDFJDP_00205;NCLOCB_00700;NLLOAD_00551;NMFHKC_01034;OBKBPL_02701 | 50S ribosomal protein L34 | ||
| 41 | group_454 | gene_presence_absence | rnpA | group_454 | A6739_RS00035 | none confidence | rnpA | DUF927 domain-containing protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 46.06 | 1.84 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.06; coverage=1.84 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_4545 | AIGIAA_03065;ANNMME_00711;BIMHKD_00223;CHLMLA_02104;DEPLCM_00549;EDMCBA_00702;EKEFBI_00246;EMLMMI_00246;ENEAAA_00437;FDMKAG_01031;FKBKHM_03449;FNOCKN_00736;GEIJOK_00052;GJMGGM_00699;GMFAHH_00375;HENMEN_02074;HKLMOD_00407;HMEENH_02120;IILCLB_00958;JAKFAI_00866;JDELMK_01990;JEJHBL_00052;JGKJBK_00185;KDMBIP_03048;LPJHGC_00052;MDFJDP_00203;NCLOCB_00702;NLLOAD_00549;NMFHKC_01032;OBKBPL_02703 | ribonuclease P protein component | ||
| 42 | group_773 | gene_presence_absence | group_773 | group_773 | A6739_RS00015 | none confidence | group_773 | hypothetical protein;Bacteriophage protein | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 41.33 | 2.26 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=41.33; coverage=2.26 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.67 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 1.07e-05 | 13.1282 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_773 | ACIDLP_03862;AEAJCM_00299;AHMIAP_02620;AIGIAA_01386;AMBHCN_00809;ANGLGM_03378;ANNMME_03368;APKFKK_00300;BCAJEO_00301;BDOIEG_02078;BIMHKD_03643;BKKCFL_02468;CHLMLA_03844;CLAKBE_02772;COHMLF_02619;DEPLCM_03648;DHMCKF_02998;DLCDOA_00935;DPCGGD_03835;EDMCBA_03838;EKEFBI_03180;EKJIGM_02827;EMLMMI_03183;ENEAAA_03837;FAMOPM_02761;FDMKAG_01093;FKBKHM_03687;FNOCKN_03068;GAEFLF_02678;GEIJOK_01647 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 43 | group_1184 | gene_presence_absence | gyrB | group_1184 | A6739_RS00060 | none confidence | gyrB | Sulfatase N-terminal domain-containing protein | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | none | 29.20 | 0.58 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.20; coverage=0.58 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.51 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 2.77e-05 | 13.0202 | Panaroo/Bakta+GenBank | nucleotide_similarity | 10586..13054 | matched_representative_sequence=group_1184 | AEPHHL_03691;AGNLLF_03342;AOBNGK_01987;CMDNKJ_01810;CNACEH_03015;FEECBJ_03328;JEOFII_02388;JMGEHL_02781;KNPJLO_02719;NADHLL_01345;NANECH_02759;NGKKDC_03683;OKKAGP_02240;OLJICN_03686;OMJIED_00718 | DNA topoisomerase (ATP-hydrolyzing) subunit B | ||
| 44 | group_4461 | gene_presence_absence | lysE | group_4461 | A6739_RS00070 | none confidence | lysE | Amino acid transporter LysE | A6739_RS00070 | VTT domain-containing protein | none | 42.19 | 1.44 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.19; coverage=1.44 | 0 | 50 | 0.0000 | 7 | 50 | 0.1400 | controls (CSAB OXA23 negative) | -5.43 | 0.0574257 | 0.003187-1.035 | 0.00318726 | 1.03466 | 1.35e-06 | 12.9918 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_4461 | AEPHHL_00469;AGNLLF_00734;KAIBOE_04029;NADHLL_03049;NGKKDC_00090;OLJICN_02562;OMJIED_02412 | VTT domain-containing protein | |||
| 45 | group_283 | gene_presence_absence | group_283 | group_283 | A6739_RS00005 | none confidence | group_283 | Long-chain fatty acid transporter | A6739_RS00005 | DsbC family protein | none | 38.86 | 1.40 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.86; coverage=1.40 | 50 | 50 | 1.0000 | 37 | 50 | 0.7400 | cases (CRAB OXA23 positive) | 4.5 | 36.36 | 2.094-631.2 | 2.09447 | 631.209 | 1.65e-05 | 12.9668 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2838 | ACIDLP_01986;AEAJCM_00402;AHMIAP_02731;AIGIAA_00490;AMBHCN_02887;ANGLGM_02564;ANNMME_03334;AOBNGK_01261;APKFKK_00583;BCAJEO_00676;BDOIEG_01863;BIMHKD_01416;BKKCFL_02858;CHLMLA_02526;CLAKBE_01587;CMDNKJ_00849;CNACEH_02935;COHMLF_01207;DEPLCM_01698;DHMCKF_02049;DLCDOA_02787;DPCGGD_02897;EAFGGO_01857;EDMCBA_02616;EKEFBI_03434;EKJIGM_02412;EMLMMI_03437;ENEAAA_02764;FAMOPM_02922;FDMKAG_02742 | DsbC family protein | |||
| 46 | group_285 | gene_presence_absence | erpA | group_285 | A6739_RS00095 | none confidence | erpA | Long-chain fatty acid transporter | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 46.43 | 1.61 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.43; coverage=1.61 | 0 | 50 | 0.0000 | 13 | 50 | 0.2600 | controls (CSAB OXA23 negative) | -4.5 | 0.0275028 | 0.001584-0.4774 | 0.00158426 | 0.477448 | 1.65e-05 | 12.9668 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2851 | AEPHHL_02079;AGNLLF_02693;EOONHM_01416;FEECBJ_03093;GLGIIC_02467;GMMHOP_01650;JBKHKM_03684;LNGIEH_02280;MOFLDA_01209;NGKKDC_02364;OBMFOM_03720;OLJICN_02134;OMJIED_00030 | iron-sulfur cluster insertion protein ErpA | ||
| 47 | group_6231 | gene_presence_absence | rnpA | group_6231 | A6739_RS00035 | none confidence | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 41.58 | 4.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=41.58; coverage=4.69 | 0 | 50 | 0.0000 | 16 | 50 | 0.3200 | controls (CSAB OXA23 negative) | -4.98 | 0.0207021 | 0.001202-0.3567 | 0.00120151 | 0.356698 | 4.29e-05 | 12.9616 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_6231 | AEAJCM_02219;AEPHHL_01016;APKFKK_02303;BCAJEO_02347;EAFGGO_00672;GPCEGG_02149;HIOOEO_02208;KAIBOE_03661;LABLAA_00931;NGKKDC_00622;NKDDBA_02207;OIJAEJ_02178;OLJICN_00065;OMAPCN_02194;PAJDEF_02208;PDBBOI_02174 | ribonuclease P protein component | ||
| 48 | group_457 | gene_presence_absence | dnaA | group_457 | A6739_RS00045 | none confidence | dnaA | Terminase | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 36.91 | 1.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.91; coverage=1.54 | 0 | 50 | 0.0000 | 16 | 50 | 0.3200 | controls (CSAB OXA23 negative) | -4.98 | 0.0207021 | 0.001202-0.3567 | 0.00120151 | 0.356698 | 4.29e-05 | 12.9616 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_4574 | AEAJCM_02216;AEPHHL_01013;APKFKK_02300;BCAJEO_02344;EAFGGO_00675;GPCEGG_02146;HIOOEO_02205;KAIBOE_03658;LABLAA_00934;NGKKDC_00625;NKDDBA_02204;OIJAEJ_02175;OLJICN_00068;OMAPCN_02191;PAJDEF_02205;PDBBOI_02177 | chromosomal replication initiator protein DnaA | ||
| 49 | group_6554 | gene_presence_absence | erpA | group_6554 | A6739_RS00095 | none confidence | erpA | iron-sulfur cluster insertion protein ErpA | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 30.84 | 7.62 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.84; coverage=7.62 | 49 | 50 | 0.9800 | 17 | 50 | 0.3400 | cases (CRAB OXA23 positive) | 3.1 | 63.1714 | 11.26-354.3 | 11.2644 | 354.268 | 0.000105 | 12.9600 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=9_refound_46 | 12_refound_67;16_refound_91;17_refound_104;18_refound_121;19_refound_127;1_refound_7;20_refound_137;24_refound_169;35_refound_235;38_refound_268;46_refound_339;47_refound_344;48_refound_350;56_refound_404;57_refound_414;62_refound_460;69_refound_504;6_refound_37;70_refound_514;80_refound_588;84_refound_614;94_refound_686;97_refound_710;9_refound_46;ANGLGM_01552;ANNMME_00648;AOBNGK_00920;BIMHKD_00286;BKKCFL_00903;CLAKBE_01252 | iron-sulfur cluster insertion protein ErpA | ||
| 50 | group_2709 | gene_presence_absence | group_2709 | group_2709 | A6739_RS00100 | none confidence | group_2709 | Translesion error-prone DNA polymerase V autoproteolytic subunit | A6739_RS00100 | alpha/beta fold hydrolase | none | 36.82 | 1.80 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=36.82; coverage=1.80 | 1 | 50 | 0.0200 | 31 | 50 | 0.6200 | controls (CSAB OXA23 negative) | -3.39 | 0.018759 | 0.00336-0.1047 | 0.00335985 | 0.104737 | 6.18e-05 | 12.9453 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_2709 | AEAJCM_03522;AEPHHL_01587;AGNLLF_02992;APKFKK_03477;BCAJEO_03539;BDOIEG_02088;CNACEH_02188;DLCDOA_00102;EAFGGO_02328;GLMFPI_03294;GMMHOP_00295;GPCEGG_03664;HIOOEO_03469;IJKCGG_01026;JBKHKM_01692;JEOFII_00702;JMGEHL_02004;KAIBOE_03909;LAEAMC_00097;LNGIEH_02758;MOFLDA_00282;NANECH_01068;NGKKDC_01666;NJCICH_02037;NKDDBA_03466;OBMFOM_01720;OIJAEJ_03417;OKKAGP_03228;OLJICN_01666;OMAPCN_03497 | alpha/beta fold hydrolase | |||
| 51 | group_2185 | gene_presence_absence | group_2185 | group_2185 | A6739_RS00100 | none confidence | group_2185 | hypothetical protein;HTH tetR-type domain-containing protein | A6739_RS00100 | alpha/beta fold hydrolase | none | 34.67 | 1.54 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.67; coverage=1.54 | 21 | 50 | 0.4200 | 49 | 50 | 0.9800 | controls (CSAB OXA23 negative) | -11.5 | 0.0220853 | 0.003967-0.1229 | 0.0039672 | 0.122948 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_2185 | ACIDLP_01719;AEAJCM_01258;AEPHHL_00172;AGNLLF_01030;AHMIAP_00026;AIGIAA_02216;AMBHCN_02172;AOBNGK_00500;APKFKK_01257;BCAJEO_01416;BDOIEG_00138;CHLMLA_01434;CMDNKJ_00404;CNACEH_00387;COHMLF_00219;DHMCKF_00354;DLCDOA_02447;DLCDOA_02448;DPCGGD_01783;EAFGGO_00179;EDMCBA_01489;EKJIGM_02902;ENEAAA_01261;EOONHM_02596;FEECBJ_01023;FKBKHM_01439;FNOCKN_01350;GGMMDJ_02265;GJMGGM_01383;GLGIIC_02077 | alpha/beta fold hydrolase | |||
| 52 | group_1468 | gene_presence_absence | mnmE | group_1468 | A6739_RS00020 | none confidence | mnmE | Transport permease protein | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 30.07 | 0.89 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.07; coverage=0.89 | 21 | 50 | 0.4200 | 49 | 50 | 0.9800 | controls (CSAB OXA23 negative) | -11.5 | 0.0220853 | 0.003967-0.1229 | 0.0039672 | 0.122948 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2023..3378) | matched_representative_sequence=group_1468 | ACIDLP_01716;AEAJCM_01261;AEPHHL_00169;AGNLLF_01033;AHMIAP_00029;AIGIAA_02213;AMBHCN_02169;AOBNGK_00496;APKFKK_01254;BCAJEO_01413;BDOIEG_00135;CHLMLA_01431;CMDNKJ_00402;CNACEH_00390;COHMLF_00222;DHMCKF_00351;DLCDOA_02451;DPCGGD_01786;EAFGGO_00176;EDMCBA_01486;EKJIGM_02905;ENEAAA_01264;EOONHM_02593;FEECBJ_01020;FKBKHM_01436;FNOCKN_01347;GGMMDJ_02262;GJMGGM_01380;GLGIIC_02080;GLMFPI_03885 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 53 | group_27 | gene_presence_absence | group_27 | group_27 | A6739_RS00085 | none confidence | group_27 | Transport permease protein;hypothetical protein | A6739_RS00085 | putative solute-binding protein | none | 39.74 | 0.94 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.74; coverage=0.94 | 21 | 50 | 0.4200 | 49 | 50 | 0.9800 | controls (CSAB OXA23 negative) | -11.5 | 0.0220853 | 0.003967-0.1229 | 0.0039672 | 0.122948 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 17825..18832 | matched_representative_sequence=group_2739 | ACIDLP_01715;AEAJCM_01262;AEAJCM_01263;AEPHHL_00168;AGNLLF_01034;AHMIAP_00030;AIGIAA_02212;AMBHCN_02168;AOBNGK_00495;APKFKK_01252;APKFKK_01253;BCAJEO_01411;BCAJEO_01412;BDOIEG_00134;CHLMLA_01430;CMDNKJ_00401;CNACEH_00391;COHMLF_00223;DHMCKF_00350;DLCDOA_02452;DPCGGD_01787;EAFGGO_00175;EDMCBA_01485;EKJIGM_02906;ENEAAA_01265;EOONHM_02592;FEECBJ_01019;FKBKHM_01435;FNOCKN_01346;GGMMDJ_02261 | putative solute-binding protein | |||
| 54 | group_6886 | gene_presence_absence | group_6886 | group_6886 | A6739_RS00105 | none confidence | group_6886 | hypothetical protein;Helicase | A6739_RS00105 | anhydro-N-acetylmuramic acid kinase | none | 23.52 | 0.37 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=23.52; coverage=0.37 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(21668..22795) | matched_representative_sequence=group_6886 | ANGLGM_00318;ANNMME_03513;BIMHKD_03702;BKKCFL_02809;BKKCFL_03239;CLAKBE_03076;CLAKBE_03267;DEPLCM_03739;EKEFBI_02799;EMLMMI_02968;FAMOPM_02959;FAMOPM_03037;FDMKAG_03613;GAEFLF_02992;GAEFLF_03221;GEIJOK_03616;IILCLB_03103;JEJHBL_03616;JFJBEF_03481;JGKJBK_01322;JOLCOG_03147;KDMBIP_00025;LPJHGC_03094;MDFJDP_01561;MOFKMO_03497;NLLOAD_03739;NMFHKC_01661;NMOMMB_03065;NMOMMB_03328;OBKBPL_00999 | anhydro-N-acetylmuramic acid kinase | |||
| 55 | group_6822 | gene_presence_absence | group_6822 | group_6822 | A6739_RS00070 | none confidence | group_6822 | Metal-dependent hydrolase | A6739_RS00070 | VTT domain-containing protein | none | 30.81 | 1.38 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=30.81; coverage=1.38 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_6822 | ANGLGM_03309;ANNMME_00336;BIMHKD_01032;BKKCFL_03357;CLAKBE_03552;DEPLCM_01351;EKEFBI_02860;EMLMMI_02908;FAMOPM_03234;FDMKAG_01601;GAEFLF_03467;GEIJOK_01139;IILCLB_02359;JEJHBL_01601;JFJBEF_03353;JGKJBK_00690;JOLCOG_03004;KDMBIP_00085;LPJHGC_01724;MDFJDP_00783;MOFKMO_03371;NLLOAD_01351;NMFHKC_01602;NMOMMB_03540;OBKBPL_00940;OCKDLB_01176;OMJNPG_03599;OOAOIA_01762;PDKMKB_01975;PPMPJI_02954 | VTT domain-containing protein | |||
| 56 | group_5900 | gene_presence_absence | cdiI | group_5900 | A6739_RS00095 | none confidence | cdiI | CdiI immunity protein domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 42.69 | 2.93 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.69; coverage=2.93 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_5900 | ANGLGM_00725;ANNMME_04081;BIMHKD_04123;BKKCFL_03793;CLAKBE_03933;DEPLCM_04115;EKEFBI_02099;EMLMMI_02103;FAMOPM_03640;FDMKAG_03127;GAEFLF_03840;GEIJOK_02162;IILCLB_00052;JEJHBL_02361;JFJBEF_02889;JGKJBK_02541;JOLCOG_02489;KDMBIP_01863;LPJHGC_00928;MDFJDP_02476;MOFKMO_02615;NLLOAD_04116;NMFHKC_02398;NMOMMB_03937;OBKBPL_01889;OCKDLB_02428;OMJNPG_03649;OOAOIA_02103;PDKMKB_01696;PPMPJI_02428 | iron-sulfur cluster insertion protein ErpA | ||
| 57 | group_5839 | gene_presence_absence | group_5839 | group_5839 | A6739_RS00015 | none confidence | group_5839 | DUF4234 domain-containing protein | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 45.54 | 2.81 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=45.54; coverage=2.81 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_5839 | ANGLGM_01649;ANNMME_01832;BIMHKD_00040;BKKCFL_03135;CLAKBE_02992;DEPLCM_00732;EKEFBI_00064;EMLMMI_00064;FAMOPM_01939;FDMKAG_02584;GAEFLF_02850;GEIJOK_02693;IILCLB_03005;JEJHBL_02691;JFJBEF_01321;JGKJBK_00003;JOLCOG_02344;KDMBIP_02683;LPJHGC_02844;MDFJDP_00385;MOFKMO_01572;NLLOAD_00732;NMFHKC_03054;NMOMMB_02971;OBKBPL_02888;OCKDLB_02760;OMJNPG_02639;OOAOIA_02868;PDKMKB_02754;PPMPJI_00064 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 58 | group_5779 | gene_presence_absence | group_5779 | group_5779 | A6739_RS00070 | none confidence | group_5779 | VTT domain-containing protein | A6739_RS00070 | VTT domain-containing protein | none | 34.15 | 3.03 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.15; coverage=3.03 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_5779 | ANGLGM_00726;ANNMME_04082;BIMHKD_04122;BKKCFL_03794;CLAKBE_03934;DEPLCM_04114;EKEFBI_02100;EMLMMI_02104;FAMOPM_03641;FDMKAG_03128;GAEFLF_03841;GEIJOK_02163;IILCLB_00053;JEJHBL_02360;JFJBEF_02890;JGKJBK_02540;JOLCOG_02490;KDMBIP_01862;LPJHGC_00929;MDFJDP_02475;MOFKMO_02616;NLLOAD_04115;NMFHKC_02397;NMOMMB_03938;OBKBPL_01890;OCKDLB_02427;OMJNPG_03650;OOAOIA_02102;PDKMKB_01695;PPMPJI_02427 | VTT domain-containing protein | |||
| 59 | group_5332 | gene_presence_absence | cybC | group_5332 | A6739_RS00065 | none confidence | cybC | cytochrome b562 | A6739_RS00065 | cybC | cytochrome b562 | none | 37.40 | 2.80 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.40; coverage=2.80 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_5332 | ANGLGM_00724;ANNMME_04080;BIMHKD_04124;BKKCFL_03792;CLAKBE_03932;DEPLCM_04116;EKEFBI_02098;EMLMMI_02102;FAMOPM_03639;FDMKAG_03126;GAEFLF_03839;GEIJOK_02161;IILCLB_00051;JEJHBL_02362;JFJBEF_02888;JGKJBK_02542;JOLCOG_02488;KDMBIP_01864;LPJHGC_00927;MDFJDP_02477;MOFKMO_02614;NLLOAD_04117;NMFHKC_02399;NMOMMB_03936;OBKBPL_01888;OCKDLB_02429;OMJNPG_03648;OOAOIA_02104;PDKMKB_01697;PPMPJI_02429 | cytochrome b562 | ||
| 60 | group_5247 | gene_presence_absence | cybC | group_5247 | A6739_RS00065 | none confidence | cybC | SRPBCC family protein | A6739_RS00065 | cybC | cytochrome b562 | none | 45.52 | 1.95 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=45.52; coverage=1.95 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_5247 | ANGLGM_00522;ANNMME_01456;BIMHKD_01822;BKKCFL_01381;CLAKBE_01868;DEPLCM_01935;EKEFBI_02706;EMLMMI_02502;FAMOPM_01642;FDMKAG_01195;GAEFLF_01795;GEIJOK_01545;IILCLB_01114;JEJHBL_01195;JFJBEF_02194;JGKJBK_03282;JOLCOG_01331;KDMBIP_00492;LPJHGC_01318;MDFJDP_03307;MOFKMO_02144;NLLOAD_01935;NMFHKC_01196;NMOMMB_01920;OBKBPL_03784;OCKDLB_01582;OMJNPG_01155;OOAOIA_02516;PDKMKB_02172;PPMPJI_02756 | cytochrome b562 | ||
| 61 | group_5123 | gene_presence_absence | rnpA | group_5123 | A6739_RS00035 | none confidence | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 38.13 | 2.04 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.13; coverage=2.04 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_5123 | ANGLGM_00315;ANNMME_03516;BIMHKD_03699;BKKCFL_03236;CLAKBE_03270;DEPLCM_03736;EKEFBI_02796;EMLMMI_02971;FAMOPM_03040;FDMKAG_03610;GAEFLF_03224;GEIJOK_03613;IILCLB_03106;JEJHBL_03613;JFJBEF_03484;JGKJBK_01325;JOLCOG_03150;KDMBIP_00022;LPJHGC_03097;MDFJDP_01558;MOFKMO_03494;NLLOAD_03736;NMFHKC_01664;NMOMMB_03325;OBKBPL_01002;OCKDLB_01113;OMJNPG_03521;OOAOIA_01824;PDKMKB_02038;PPMPJI_03017 | ribonuclease P protein component | ||
| 62 | group_5087 | gene_presence_absence | group_5087 | group_5087 | A6739_RS00005 | none confidence | group_5087 | NTF2 fold immunity protein domain-containing protein | A6739_RS00005 | DsbC family protein | none | 39.61 | 2.44 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.61; coverage=2.44 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_5087 | ANGLGM_01647;ANNMME_01834;BIMHKD_00042;BKKCFL_03133;CLAKBE_02994;DEPLCM_00730;EKEFBI_00066;EMLMMI_00066;FAMOPM_01941;FDMKAG_02586;GAEFLF_02848;GEIJOK_02695;IILCLB_03003;JEJHBL_02693;JFJBEF_01323;JGKJBK_00005;JOLCOG_02346;KDMBIP_02685;LPJHGC_02842;MDFJDP_00383;MOFKMO_01570;NLLOAD_00730;NMFHKC_03056;NMOMMB_02973;OBKBPL_02886;OCKDLB_02762;OMJNPG_02637;OOAOIA_02866;PDKMKB_02752;PPMPJI_00066 | DsbC family protein | |||
| 63 | group_5030 | gene_presence_absence | yidD | group_5030 | A6739_RS00030 | none confidence | yidD | membrane protein insertion efficiency factorYidD | A6739_RS00030 | yidD | membrane protein insertion efficiency factorYidD | none | 36.13 | 1.94 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.13; coverage=1.94 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5235..5555) | matched_representative_sequence=group_5030 | ANGLGM_01650;ANNMME_01831;BIMHKD_00039;BKKCFL_03136;CLAKBE_02991;DEPLCM_00733;EKEFBI_00063;EMLMMI_00063;FAMOPM_01938;FDMKAG_02583;GAEFLF_02851;GEIJOK_02692;IILCLB_03006;JEJHBL_02690;JFJBEF_01320;JGKJBK_00002;JOLCOG_02343;KDMBIP_02682;LPJHGC_02845;MDFJDP_00386;MOFKMO_01573;NLLOAD_00733;NMFHKC_03053;NMOMMB_02970;OBKBPL_02889;OCKDLB_02759;OMJNPG_02640;OOAOIA_02869;PDKMKB_02755;PPMPJI_00063 | membrane protein insertion efficiency factorYidD | ||
| 64 | group_4931 | gene_presence_absence | erpA | group_4931 | A6739_RS00095 | none confidence | erpA | Immunity protein 26 | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 35.16 | 1.66 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.16; coverage=1.66 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_4931 | ANGLGM_00511;ANNMME_01467;BIMHKD_01811;BKKCFL_01370;CLAKBE_01879;DEPLCM_01924;EKEFBI_02695;EMLMMI_02513;FAMOPM_01653;FDMKAG_01206;GAEFLF_01784;GEIJOK_01534;IILCLB_01125;JEJHBL_01206;JFJBEF_02205;JGKJBK_02188;JOLCOG_01320;KDMBIP_00481;LPJHGC_01329;MDFJDP_01992;MOFKMO_02133;NLLOAD_01924;NMFHKC_01207;NMOMMB_01931;OBKBPL_00545;OCKDLB_01571;OMJNPG_01144;OOAOIA_02505;PDKMKB_02183;PPMPJI_02745 | iron-sulfur cluster insertion protein ErpA | ||
| 65 | group_4864 | gene_presence_absence | erpA | group_4864 | A6739_RS00095 | none confidence | erpA | Immunity protein 30 domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 34.53 | 2.01 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.53; coverage=2.01 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_4864 | ANGLGM_00510;ANNMME_01468;BIMHKD_01810;BKKCFL_01369;CLAKBE_01880;DEPLCM_01923;EKEFBI_02694;EMLMMI_02514;FAMOPM_01654;FDMKAG_01207;GAEFLF_01783;GEIJOK_01533;IILCLB_01126;JEJHBL_01207;JFJBEF_02206;JGKJBK_02187;JOLCOG_01319;KDMBIP_00480;LPJHGC_01330;MDFJDP_01993;MOFKMO_02132;NLLOAD_01923;NMFHKC_01208;NMOMMB_01932;OBKBPL_00546;OCKDLB_01570;OMJNPG_01143;OOAOIA_02504;PDKMKB_02184;PPMPJI_02744 | iron-sulfur cluster insertion protein ErpA | ||
| 66 | group_4574 | gene_presence_absence | dnaA | group_4574 | A6739_RS00045 | none confidence | dnaA | DUF3592 domain-containing protein | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 36.91 | 1.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.91; coverage=1.54 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_4574 | ANGLGM_01648;ANNMME_01833;BIMHKD_00041;BKKCFL_03134;CLAKBE_02993;DEPLCM_00731;EKEFBI_00065;EMLMMI_00065;FAMOPM_01940;FDMKAG_02585;GAEFLF_02849;GEIJOK_02694;IILCLB_03004;JEJHBL_02692;JFJBEF_01322;JGKJBK_00004;JOLCOG_02345;KDMBIP_02684;LPJHGC_02843;MDFJDP_00384;MOFKMO_01571;NLLOAD_00731;NMFHKC_03055;NMOMMB_02972;OBKBPL_02887;OCKDLB_02761;OMJNPG_02638;OOAOIA_02867;PDKMKB_02753;PPMPJI_00065 | chromosomal replication initiator protein DnaA | ||
| 67 | sbcC | gene_presence_absence | sbcC | sbcC | A6739_RS00090 | none confidence | sbcC | Exonuclease SbcC | A6739_RS00090 | putative solute-binding protein | none | 33.46 | 1.48 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=33.46; coverage=1.48 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 19175..20179 | matched_representative_sequence=sbcC | ANGLGM_03071;ANNMME_02655;BIMHKD_02567;BKKCFL_02274;CLAKBE_02553;DEPLCM_02746;EKEFBI_02023;EMLMMI_01674;FAMOPM_02564;FDMKAG_03051;GAEFLF_02544;GEIJOK_03160;IILCLB_02125;JEJHBL_03039;JFJBEF_03419;JGKJBK_02765;JOLCOG_03071;KDMBIP_02838;LPJHGC_02725;MDFJDP_02764;MOFKMO_03452;NLLOAD_02681;NMFHKC_03003;NMOMMB_02543;OBKBPL_03445;OCKDLB_03108;OMJNPG_03163;OOAOIA_03227;PDKMKB_03057;PPMPJI_01217 | putative solute-binding protein | |||
| 68 | group_4110 | gene_presence_absence | dnaN | group_4110 | A6739_RS00050 | none confidence | dnaN | Acetoacetate decarboxylase | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 31.43 | 1.74 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=31.43; coverage=1.74 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_4110 | ANGLGM_03308;ANNMME_00337;BIMHKD_01033;BKKCFL_03356;CLAKBE_03553;DEPLCM_01350;EKEFBI_02861;EMLMMI_02907;FAMOPM_03233;FDMKAG_01600;GAEFLF_03466;GEIJOK_01140;IILCLB_02358;JEJHBL_01600;JFJBEF_03352;JGKJBK_00689;JOLCOG_03005;KDMBIP_00086;LPJHGC_01723;MDFJDP_00782;MOFKMO_03372;NLLOAD_01350;NMFHKC_01601;NMOMMB_03539;OBKBPL_00939;OCKDLB_01177;OMJNPG_03600;OOAOIA_01761;PDKMKB_01974;PPMPJI_02953 | DNA polymerase III subunit beta | ||
| 69 | group_3963 | gene_presence_absence | fabG | group_3963 | A6739_RS00045 | none confidence | fabG | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 30.73 | 1.38 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.73; coverage=1.38 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_3963 | ANGLGM_00523;ANNMME_01455;BIMHKD_01823;BKKCFL_01382;CLAKBE_01867;DEPLCM_01936;EKEFBI_02707;EMLMMI_02501;FAMOPM_01641;FDMKAG_01194;GAEFLF_01796;GEIJOK_01546;IILCLB_01113;JEJHBL_01194;JFJBEF_02193;JGKJBK_03283;JOLCOG_01332;KDMBIP_00493;LPJHGC_01317;MDFJDP_03308;MOFKMO_02145;NLLOAD_01936;NMFHKC_01195;NMOMMB_01919;OBKBPL_03785;OCKDLB_01583;OMJNPG_01156;OOAOIA_02517;PDKMKB_02171;PPMPJI_02757 | chromosomal replication initiator protein DnaA | ||
| 70 | group_3947 | gene_presence_absence | ydfG | group_3947 | A6739_RS00085 | none confidence | ydfG | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | A6739_RS00085 | putative solute-binding protein | none | 34.11 | 1.37 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.11; coverage=1.37 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 17825..18832 | matched_representative_sequence=group_3947 | ANGLGM_03307;ANNMME_00338;BIMHKD_01034;BKKCFL_03355;CLAKBE_03554;DEPLCM_01349;EKEFBI_02862;EMLMMI_02906;FAMOPM_03232;FDMKAG_01599;GAEFLF_03465;GEIJOK_01141;IILCLB_02357;JEJHBL_01599;JFJBEF_03351;JGKJBK_00688;JOLCOG_03006;KDMBIP_00087;LPJHGC_01722;MDFJDP_00781;MOFKMO_03373;NLLOAD_01349;NMFHKC_01600;NMOMMB_03538;OBKBPL_00938;OCKDLB_01178;OMJNPG_03601;OOAOIA_01760;PDKMKB_01973;PPMPJI_02952 | putative solute-binding protein | |||
| 71 | group_3770 | gene_presence_absence | group_3770 | group_3770 | A6739_RS00005 | none confidence | group_3770 | Endonuclease/exonuclease/phosphatase domain-containing protein | A6739_RS00005 | DsbC family protein | none | 37.61 | 1.01 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.61; coverage=1.01 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_3770 | ANGLGM_00314;ANNMME_03517;BIMHKD_03698;BKKCFL_03235;CLAKBE_03271;DEPLCM_03735;EKEFBI_02795;EMLMMI_02972;FAMOPM_03041;FDMKAG_03609;GAEFLF_03225;GEIJOK_03612;IILCLB_03107;JEJHBL_03612;JFJBEF_03485;JGKJBK_01326;JOLCOG_03151;KDMBIP_00021;LPJHGC_03098;MDFJDP_01557;MOFKMO_03493;NLLOAD_03735;NMFHKC_01665;NMOMMB_03324;OBKBPL_01003;OCKDLB_01112;OMJNPG_03522;OOAOIA_01825;PDKMKB_02039;PPMPJI_03018 | DsbC family protein | |||
| 72 | group_3723 | gene_presence_absence | rnpA | group_3723 | A6739_RS00035 | none confidence | rnpA | HTH lysR-type domain-containing protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 29.48 | 1.11 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.48; coverage=1.11 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_3723 | ANGLGM_00525;ANNMME_01453;BIMHKD_01825;BKKCFL_01384;CLAKBE_01865;DEPLCM_01938;EKEFBI_02709;EMLMMI_02499;FAMOPM_01639;FDMKAG_01192;GAEFLF_01798;GEIJOK_01548;IILCLB_01111;JEJHBL_01192;JFJBEF_02191;JGKJBK_03285;JOLCOG_01334;KDMBIP_00495;LPJHGC_01315;MDFJDP_03310;MOFKMO_02147;NLLOAD_01938;NMFHKC_01193;NMOMMB_01917;OBKBPL_03787;OCKDLB_01585;OMJNPG_01158;OOAOIA_02519;PDKMKB_02169;PPMPJI_02759 | ribonuclease P protein component | ||
| 73 | group_3518 | gene_presence_absence | group_3518 | group_3518 | A6739_RS00070 | none confidence | group_3518 | Polyketide cyclase | A6739_RS00070 | VTT domain-containing protein | none | 40.47 | 1.02 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=40.47; coverage=1.02 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_3518 | ANGLGM_00526;ANNMME_01452;BIMHKD_01826;BKKCFL_01385;CLAKBE_01864;DEPLCM_01939;EKEFBI_02710;EMLMMI_02498;FAMOPM_01638;FDMKAG_01191;GAEFLF_01799;GEIJOK_01549;IILCLB_01110;JEJHBL_01191;JFJBEF_02190;JGKJBK_03286;JOLCOG_01335;KDMBIP_00496;LPJHGC_01314;MDFJDP_03311;MOFKMO_02148;NLLOAD_01939;NMFHKC_01192;NMOMMB_01916;OBKBPL_03788;OCKDLB_01586;OMJNPG_01159;OOAOIA_02520;PDKMKB_02168;PPMPJI_02760 | VTT domain-containing protein | |||
| 74 | group_3450 | gene_presence_absence | dnaN | group_3450 | A6739_RS00050 | none confidence | dnaN | Pyridoxal 4-dehydrogenase | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 37.96 | 1.19 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.96; coverage=1.19 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_3450 | ANGLGM_00524;ANNMME_01454;BIMHKD_01824;BKKCFL_01383;CLAKBE_01866;DEPLCM_01937;EKEFBI_02708;EMLMMI_02500;FAMOPM_01640;FDMKAG_01193;GAEFLF_01797;GEIJOK_01547;IILCLB_01112;JEJHBL_01193;JFJBEF_02192;JGKJBK_03284;JOLCOG_01333;KDMBIP_00494;LPJHGC_01316;MDFJDP_03309;MOFKMO_02146;NLLOAD_01937;NMFHKC_01194;NMOMMB_01918;OBKBPL_03786;OCKDLB_01584;OMJNPG_01157;OOAOIA_02518;PDKMKB_02170;PPMPJI_02758 | DNA polymerase III subunit beta | ||
| 75 | group_3379 | gene_presence_absence | dnaA | group_3379 | A6739_RS00045 | none confidence | dnaA | HTH araC/xylS-type domain-containing protein | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 32.15 | 1.05 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.15; coverage=1.05 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_3379 | ANGLGM_03306;ANNMME_00339;BIMHKD_01035;BKKCFL_03354;CLAKBE_03555;DEPLCM_01348;EKEFBI_02863;EMLMMI_02905;FAMOPM_03231;FDMKAG_01598;GAEFLF_03464;GEIJOK_01142;IILCLB_02356;JEJHBL_01598;JFJBEF_03350;JGKJBK_00687;JOLCOG_03007;KDMBIP_00088;LPJHGC_01721;MDFJDP_00780;MOFKMO_03374;NLLOAD_01348;NMFHKC_01599;NMOMMB_03537;OBKBPL_00937;OCKDLB_01179;OMJNPG_03602;OOAOIA_01759;PDKMKB_01972;PPMPJI_02951 | chromosomal replication initiator protein DnaA | ||
| 76 | group_631 | gene_presence_absence | rpmH | group_631 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 50.45 | 3.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=50.45; coverage=3.54 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_6311 | ANGLGM_00722;ANNMME_04078;BIMHKD_04126;BKKCFL_02176;CLAKBE_02489;DEPLCM_04118;EKEFBI_02096;EMLMMI_02100;FAMOPM_02407;FDMKAG_03124;GAEFLF_02442;GEIJOK_02159;IILCLB_00049;JEJHBL_02364;JFJBEF_02886;JGKJBK_02544;JOLCOG_02486;KDMBIP_01866;LPJHGC_00925;MDFJDP_02479;MOFKMO_02612;NLLOAD_04119;NMFHKC_02401;NMOMMB_00967;OBKBPL_01886;OCKDLB_02431;OMJNPG_03646;OOAOIA_02106;PDKMKB_01699;PPMPJI_02431 | 50S ribosomal protein L34 | ||
| 77 | group_1533 | gene_presence_absence | dnaN | group_1533 | A6739_RS00050 | none confidence | dnaN | Broad specificity amino-acid racemase | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 30.63 | 0.85 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.63; coverage=0.85 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.47 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 2.68e-05 | 12.8982 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_1533 | AEPHHL_00477;AGNLLF_00726;AOBNGK_02639;EAFGGO_00503;EOONHM_02183;GLGIIC_00840;GMMHOP_00635;JBKHKM_02260;LNGIEH_00793;MOFLDA_01567;NGKKDC_00082;OBMFOM_02288;OLJICN_02570;OMJIED_03670 | DNA polymerase III subunit beta | ||
| 78 | group_1879 | gene_presence_absence | dnaN | group_1879 | A6739_RS00050 | none confidence | dnaN | Lipoprotein | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 38.81 | 1.06 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.81; coverage=1.06 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.38 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 3.97e-05 | 12.8639 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_1879 | AEPHHL_03503;AGNLLF_03416;BDOIEG_02298;CMDNKJ_03743;DLCDOA_03511;EOONHM_00526;GLGIIC_03474;GMMHOP_01266;JBKHKM_02003;KNPJLO_01006;LNGIEH_03284;MOFLDA_02720;NGKKDC_03494;OBMFOM_02031;OLJICN_03370 | DNA polymerase III subunit beta | ||
| 79 | group_2662 | gene_presence_absence | group_2662 | group_2662 | A6739_RS00105 | none confidence | group_2662 | Lysozyme | A6739_RS00105 | anhydro-N-acetylmuramic acid kinase | none | 36.45 | 1.97 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=36.45; coverage=1.97 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.99 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 4.35e-05 | 12.8242 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(21668..22795) | matched_representative_sequence=group_2662 | AEAJCM_03646;AEPHHL_01044;APKFKK_03567;BCAJEO_03632;EAFGGO_00644;GPCEGG_03547;HIOOEO_03560;KAIBOE_03875;NGKKDC_00594;NKDDBA_03557;OIJAEJ_03497;OLJICN_00037;OMAPCN_03587;PAJDEF_03558;PDBBOI_03534 | anhydro-N-acetylmuramic acid kinase | |||
| 80 | group_2500 | gene_presence_absence | rnpA | group_2500 | A6739_RS00035 | none confidence | rnpA | Holin | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 43.86 | 3.09 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=43.86; coverage=3.09 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.99 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 4.35e-05 | 12.8242 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_2500 | AEAJCM_01184;AEPHHL_01043;APKFKK_03711;BCAJEO_01490;EAFGGO_00645;GPCEGG_01287;HIOOEO_03706;KAIBOE_03876;NGKKDC_00595;NKDDBA_03696;OIJAEJ_03686;OLJICN_00038;OMAPCN_01302;PAJDEF_03703;PDBBOI_03703 | ribonuclease P protein component | ||
| 81 | group_899 | gene_presence_absence | yidD | group_899 | A6739_RS00030 | none confidence | yidD | membrane protein insertion efficiency factorYidD | A6739_RS00030 | yidD | membrane protein insertion efficiency factorYidD | none | 43.41 | 1.77 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=43.41; coverage=1.77 | 0 | 50 | 0.0000 | 7 | 50 | 0.1400 | controls (CSAB OXA23 negative) | -5.32 | 0.0574257 | 0.003187-1.035 | 0.00318726 | 1.03466 | 2.21e-06 | 12.7778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5235..5555) | matched_representative_sequence=group_899 | AEPHHL_02069;AGNLLF_02683;DLCDOA_02797;KAIBOE_03974;NGKKDC_02374;NJCICH_03029;OLJICN_02124 | membrane protein insertion efficiency factorYidD | ||
| 82 | group_1318 | gene_presence_absence | rnpA | group_1318 | A6739_RS00035 | none confidence | rnpA | CXXC-20-CXXC protein;hypothetical protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 40.99 | 2.38 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.99; coverage=2.38 | 49 | 50 | 0.9800 | 12 | 50 | 0.2400 | cases (CRAB OXA23 positive) | 4.55 | 101.64 | 17.75-582.1 | 17.7471 | 582.107 | 0.000789 | 12.7702 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_1318 | AHMIAP_01933;AIGIAA_01635;ANGLGM_03712;ANNMME_02346;BIMHKD_02912;BKKCFL_03424;CHLMLA_01656;CLAKBE_03644;CNACEH_03753;COHMLF_03206;DEPLCM_02975;DHMCKF_02810;DLCDOA_03168;EDMCBA_01957;EKEFBI_00651;EKJIGM_01736;EMLMMI_00651;ENEAAA_01921;FAMOPM_03322;FDMKAG_00544;FEECBJ_01470;FKBKHM_03029;FNOCKN_01851;GAEFLF_03550;GEIJOK_00539;GGMMDJ_02753;GJMGGM_01791;GMFAHH_01749;HENMEN_01626;HKLMOD_01987 | ribonuclease P protein component | ||
| 83 | group_1051 | gene_presence_absence | group_1051 | group_1051 | A6739_RS00015 | none confidence | group_1051 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 42.25 | 4.37 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=42.25; coverage=4.37 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.38 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 3.97e-05 | 12.7276 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_1051 | AEPHHL_03502;AGNLLF_03417;BDOIEG_02299;DLCDOA_03510;EOONHM_00525;GLGIIC_03475;GMMHOP_01265;JBKHKM_02004;KNPJLO_01005;LNGIEH_03285;MOFLDA_02721;NGKKDC_03493;OBMFOM_02032;OLJICN_03371 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 84 | group_7298 | gene_presence_absence | group_7298 | group_7298 | A6739_RS00005 | none confidence | group_7298 | SMI1/KNR4 family protein | A6739_RS00005 | DsbC family protein | none | 34.09 | 2.10 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.09; coverage=2.10 | 0 | 50 | 0.0000 | 7 | 50 | 0.1400 | controls (CSAB OXA23 negative) | -5.35 | 0.0574257 | 0.003187-1.035 | 0.00318726 | 1.03466 | 2.49e-06 | 12.7260 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_7298 | AEPHHL_02067;AGNLLF_02681;DLCDOA_02799;KAIBOE_03976;NANECH_03174;NGKKDC_02376;OLJICN_02122 | DsbC family protein | |||
| 85 | group_2934 | gene_presence_absence | erpA | group_2934 | A6739_RS00095 | none confidence | erpA | Histidine phosphatase family protein;hypothetical protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 32.24 | 1.72 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.24; coverage=1.72 | 0 | 50 | 0.0000 | 8 | 50 | 0.1600 | controls (CSAB OXA23 negative) | -5.33 | 0.049505 | 0.002775-0.883 | 0.00277547 | 0.883 | 4.27e-06 | 12.7059 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2934 | AEPHHL_00496;AGNLLF_00707;CMDNKJ_01237;GLGIIC_00862;KAIBOE_03970;LAEAMC_01447;LAEAMC_01448;NGKKDC_00063;OLJICN_02589 | iron-sulfur cluster insertion protein ErpA | ||
| 86 | group_6496 | gene_presence_absence | group_6496 | group_6496 | A6739_RS00015 | none confidence | group_6496 | 3-methyladenine DNA glycosylase | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 43.31 | 7.48 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=43.31; coverage=7.48 | 28 | 50 | 0.5600 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 9.83 | 127.933 | 7.476-2189 | 7.47564 | 2189.37 | 0.00198 | 12.7026 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_6496 | ANNMME_01533;BIMHKD_02096;BKKCFL_01607;CLAKBE_01927;DEPLCM_02209;EKEFBI_01168;EMLMMI_00735;FDMKAG_00460;GAEFLF_01930;GEIJOK_00623;IILCLB_02218;JEJHBL_00623;JFJBEF_02543;JGKJBK_01634;JOLCOG_00059;KDMBIP_01002;LPJHGC_01921;MDFJDP_01740;MOFKMO_00059;NLLOAD_02130;NMFHKC_00461;NMOMMB_01979;OBKBPL_00433;OCKDLB_00623;OMJNPG_02122;OOAOIA_00461;PDKMKB_00461;PPMPJI_01168 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 87 | group_4996 | gene_presence_absence | group_4996 | group_4996 | A6739_RS00100 | none confidence | group_4996 | alpha/beta fold hydrolase | A6739_RS00100 | alpha/beta fold hydrolase | none | 30.37 | 2.55 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=30.37; coverage=2.55 | 28 | 50 | 0.5600 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 9.83 | 127.933 | 7.476-2189 | 7.47564 | 2189.37 | 0.00198 | 12.7026 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_4996 | ANNMME_01534;BIMHKD_02095;BKKCFL_01608;CLAKBE_01926;DEPLCM_02208;EKEFBI_01167;EMLMMI_00736;FDMKAG_00459;GAEFLF_01929;GEIJOK_00624;IILCLB_02217;JEJHBL_00624;JFJBEF_02542;JGKJBK_01633;JOLCOG_00060;KDMBIP_01003;LPJHGC_01920;MDFJDP_01739;MOFKMO_00060;NLLOAD_02131;NMFHKC_00460;NMOMMB_01978;OBKBPL_00432;OCKDLB_00624;OMJNPG_02123;OOAOIA_00460;PDKMKB_00460;PPMPJI_01167 | alpha/beta fold hydrolase | |||
| 88 | group_4961 | gene_presence_absence | group_4961 | group_4961 | A6739_RS00070 | none confidence | group_4961 | VTT domain-containing protein | A6739_RS00070 | VTT domain-containing protein | none | 34.49 | 2.08 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.49; coverage=2.08 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.99 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 4.34e-05 | 12.6889 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_4961 | AEAJCM_02191;AEPHHL_00986;APKFKK_02275;BCAJEO_02319;GPCEGG_02121;HIOOEO_02180;KAIBOE_03840;NGKKDC_00653;NKDDBA_02179;OIJAEJ_02150;OLJICN_00095;OMAPCN_02166;PAJDEF_02180;PDBBOI_02202 | VTT domain-containing protein | |||
| 89 | group_4195 | gene_presence_absence | group_4195 | group_4195 | A6739_RS00005 | none confidence | group_4195 | DUF1828 domain-containing protein | A6739_RS00005 | DsbC family protein | none | 41.28 | 1.38 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=41.28; coverage=1.38 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.99 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 4.34e-05 | 12.6889 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_4195 | AEAJCM_02190;AEPHHL_00985;APKFKK_02274;BCAJEO_02318;GPCEGG_02120;HIOOEO_02179;KAIBOE_03841;NGKKDC_00654;NKDDBA_02178;OIJAEJ_02149;OLJICN_00096;OMAPCN_02165;PAJDEF_02179;PDBBOI_02203 | DsbC family protein | |||
| 90 | group_534 | gene_presence_absence | rnpA | group_534 | A6739_RS00035 | none confidence | rnpA | Rha family phage regulatory protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 41.63 | 3.08 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=41.63; coverage=3.08 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.99 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 4.34e-05 | 12.6889 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_5340 | AEAJCM_02227;AEPHHL_01025;APKFKK_02311;BCAJEO_02355;GPCEGG_02157;HIOOEO_02216;KAIBOE_03670;NGKKDC_00613;NKDDBA_02215;OIJAEJ_02186;OLJICN_00056;OMAPCN_02202;PAJDEF_02216;PDBBOI_02166 | ribonuclease P protein component | ||
| 91 | group_5837 | gene_presence_absence | erpA | group_5837 | A6739_RS00095 | none confidence | erpA | DUF1330 domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 42.19 | 3.16 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.19; coverage=3.16 | 49 | 50 | 0.9800 | 23 | 50 | 0.4600 | cases (CRAB OXA23 positive) | 3.8 | 38.617 | 6.948-214.6 | 6.94841 | 214.621 | 3.98e-05 | 12.6713 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_5837 | ACIDLP_01022;AHMIAP_01617;AIGIAA_02142;AMBHCN_01770;ANGLGM_02087;ANNMME_01544;BDOIEG_00467;BIMHKD_02085;BKKCFL_01618;CHLMLA_00520;CLAKBE_01916;COHMLF_02801;DEPLCM_02198;DHMCKF_01887;DLCDOA_03159;DPCGGD_01475;EAFGGO_00518;EDMCBA_00519;EKEFBI_01158;EKJIGM_01433;EMLMMI_00745;ENEAAA_01376;FDMKAG_00450;FEECBJ_01365;FKBKHM_01726;FNOCKN_00879;GAEFLF_01919;GEIJOK_00633;GGMMDJ_01901;GJMGGM_01083 | iron-sulfur cluster insertion protein ErpA | ||
| 92 | group_1478 | gene_presence_absence | group_1478 | group_1478 | A6739_RS00005 | none confidence | group_1478 | N-acetyltransferase domain-containing protein | A6739_RS00005 | DsbC family protein | none | 45.86 | 1.64 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=45.86; coverage=1.64 | 0 | 50 | 0.0000 | 11 | 50 | 0.2200 | controls (CSAB OXA23 negative) | -4.58 | 0.0340077 | 0.001944-0.595 | 0.00194385 | 0.594968 | 1.62e-05 | 12.6685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_1478 | AEPHHL_00703;AGNLLF_00145;CMDNKJ_00649;CNACEH_01764;DLCDOA_00641;FEECBJ_00689;JMGEHL_01849;NADHLL_02036;NGKKDC_00936;OLJICN_00378;OMJIED_01613 | DsbC family protein | |||
| 93 | group_6829 | gene_presence_absence | recF | group_6829 | A6739_RS00055 | none confidence | recF | hypothetical protein;Oxidoreductase | A6739_RS00055 | recF | DNA replication/repair protein RecF | none | 30.93 | 0.80 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.93; coverage=0.80 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9451..10533 | matched_representative_sequence=group_6829 | ACIDLP_01589;AHMIAP_00144;AIGIAA_02998;AMBHCN_02053;ANGLGM_00296;ANNMME_03924;BDOIEG_00019;BIMHKD_00732;BKKCFL_03217;CHLMLA_02845;CLAKBE_03289;COHMLF_00337;DEPLCM_00778;DHMCKF_00236;DPCGGD_01902;EDMCBA_02940;EKEFBI_02777;EKJIGM_03336;EMLMMI_02990;ENEAAA_02991;EOONHM_00479;FAMOPM_03059;FDMKAG_03591;FKBKHM_03103;FNOCKN_03143;GAEFLF_03243;GEIJOK_03594;GGMMDJ_03063;GJMGGM_03197;GMFAHH_02975 | DNA replication/repair protein RecF | ||
| 94 | group_1966 | gene_presence_absence | group_1966 | group_1966 | A6739_RS00005 | none confidence | group_1966 | AB hydrolase-1 domain-containing protein | A6739_RS00005 | DsbC family protein | none | 38.80 | 1.20 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.80; coverage=1.20 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_1966 | ACIDLP_01584;AHMIAP_00149;AIGIAA_02993;AMBHCN_02048;ANGLGM_00299;ANNMME_03927;BDOIEG_00016;BIMHKD_00735;BKKCFL_03220;CHLMLA_02850;CLAKBE_03286;COHMLF_00342;DEPLCM_00775;DHMCKF_00231;DPCGGD_01907;EDMCBA_02935;EKEFBI_02780;EKJIGM_03331;EMLMMI_02987;ENEAAA_02986;EOONHM_00483;FAMOPM_03056;FDMKAG_03594;FKBKHM_03108;FNOCKN_03148;GAEFLF_03240;GEIJOK_03597;GGMMDJ_03068;GJMGGM_03192;GMFAHH_02970 | DsbC family protein | |||
| 95 | group_926 | gene_presence_absence | dmeF | group_926 | A6739_RS00010 | none confidence | dmeF | hypothetical protein;DUF4386 domain-containing protein | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | none | 35.08 | 1.45 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.08; coverage=1.45 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(681..1655) | matched_representative_sequence=group_926 | ACIDLP_01590;AHMIAP_00143;AIGIAA_02999;AMBHCN_02054;ANGLGM_00295;ANNMME_03923;BDOIEG_00020;BIMHKD_00731;BKKCFL_03216;CHLMLA_02844;CLAKBE_03290;COHMLF_00336;DEPLCM_00779;DHMCKF_00237;DPCGGD_01901;EDMCBA_02941;EKEFBI_02776;EKJIGM_03337;EMLMMI_02991;ENEAAA_02992;EOONHM_00478;FAMOPM_03060;FDMKAG_03590;FKBKHM_03102;FNOCKN_03142;GAEFLF_03244;GEIJOK_03593;GGMMDJ_03062;GJMGGM_03198;GMFAHH_02976 | CDF family Co(II)/Ni(II) efflux transporterDmeF | ||
| 96 | group_850 | gene_presence_absence | yidC | group_850 | A6739_RS00025 | none confidence | yidC | Transporter;hypothetical protein | A6739_RS00025 | yidC | membrane protein insertase YidC | none | 32.31 | 0.87 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.31; coverage=0.87 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3469..5229) | matched_representative_sequence=group_850 | ACIDLP_01591;AHMIAP_00142;AIGIAA_03000;AMBHCN_02055;ANGLGM_00294;ANNMME_03922;BDOIEG_00021;BIMHKD_00730;BKKCFL_03215;CHLMLA_02843;CLAKBE_03291;COHMLF_00335;DEPLCM_00780;DHMCKF_00238;DPCGGD_01900;EDMCBA_02942;EKEFBI_02775;EKJIGM_03338;EMLMMI_02992;ENEAAA_02993;EOONHM_00477;FAMOPM_03061;FDMKAG_03589;FKBKHM_03101;FNOCKN_03141;GAEFLF_03245;GEIJOK_03592;GGMMDJ_03061;GJMGGM_03199;GMFAHH_02977 | membrane protein insertase YidC | ||
| 97 | group_1711 | gene_presence_absence | group_1711 | group_1711 | A6739_RS00070 | none confidence | group_1711 | ATP-binding protein | A6739_RS00070 | VTT domain-containing protein | none | 31.02 | 1.04 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.02; coverage=1.04 | 49 | 50 | 0.9800 | 23 | 50 | 0.4600 | cases (CRAB OXA23 positive) | 3.21 | 38.617 | 6.948-214.6 | 6.94841 | 214.621 | 5.02e-05 | 12.5705 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_1711 | AEAJCM_03097;AHMIAP_03445;AIGIAA_02537;ANGLGM_02920;ANNMME_03166;AOBNGK_02367;APKFKK_03095;BCAJEO_03172;BIMHKD_02306;BKKCFL_02290;CHLMLA_02274;CLAKBE_02724;CMDNKJ_02051;COHMLF_01832;DEPLCM_02420;DHMCKF_03075;EDMCBA_03092;EKEFBI_01649;EMLMMI_02048;ENEAAA_03319;FAMOPM_02465;FDMKAG_02321;FKBKHM_01869;FNOCKN_02589;GAEFLF_02445;GEIJOK_02626;GGMMDJ_03144;GJMGGM_02575;GLGIIC_02668;GLMFPI_03226 | VTT domain-containing protein | |||
| 98 | group_7248 | gene_presence_absence | tyrS | group_7248 | A6739_RS00110 | none confidence | tyrS | Porin domain-containing protein | A6739_RS00110 | tyrS | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | none | 29.38 | 1.20 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.38; coverage=1.20 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.8 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 4.05e-05 | 12.5501 | Panaroo/Bakta+GenBank | nucleotide_similarity | 22857..24089 | matched_representative_sequence=group_7248 | ACIDLP_01014;AHMIAP_01625;AIGIAA_02150;AMBHCN_01778;ANGLGM_02079;ANNMME_01552;AOBNGK_02632;BDOIEG_00459;BIMHKD_02077;BKKCFL_01626;CHLMLA_00512;CLAKBE_01908;COHMLF_02809;DEPLCM_02190;DHMCKF_01895;DLCDOA_03151;DPCGGD_01483;EAFGGO_00510;EDMCBA_00511;EKEFBI_01150;EKJIGM_01425;EMLMMI_00753;ENEAAA_01384;FDMKAG_00442;FEECBJ_01357;FKBKHM_01718;FNOCKN_00887;GAEFLF_01911;GEIJOK_00641;GGMMDJ_01909 | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | ||
| 99 | group_6849 | gene_presence_absence | mnmE | group_6849 | A6739_RS00020 | none confidence | mnmE | hypothetical protein;(E)-2-((N-methylformamido)methylene)succinate hydrolase | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 35.10 | 1.39 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.10; coverage=1.39 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.8 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 4.05e-05 | 12.5501 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2023..3378) | matched_representative_sequence=group_6849 | ACIDLP_01019;AHMIAP_01620;AIGIAA_02145;AMBHCN_01773;ANGLGM_02084;ANNMME_01547;AOBNGK_02627;BDOIEG_00464;BIMHKD_02082;BKKCFL_01621;CHLMLA_00517;CLAKBE_01913;COHMLF_02804;DEPLCM_02195;DHMCKF_01890;DLCDOA_03156;DPCGGD_01478;EAFGGO_00515;EDMCBA_00516;EKEFBI_01155;EKJIGM_01430;EMLMMI_00748;ENEAAA_01379;FDMKAG_00447;FEECBJ_01362;FKBKHM_01723;FNOCKN_00882;GAEFLF_01916;GEIJOK_00636;GGMMDJ_01904 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 100 | group_4941 | gene_presence_absence | tyrS | group_4941 | A6739_RS00110 | none confidence | tyrS | NCS1 nucleoside transporter | A6739_RS00110 | tyrS | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | none | 31.97 | 0.85 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=31.97; coverage=0.85 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.8 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 4.05e-05 | 12.5501 | Panaroo/Bakta+GenBank | nucleotide_similarity | 22857..24089 | matched_representative_sequence=group_4941 | ACIDLP_01015;AHMIAP_01624;AIGIAA_02149;AMBHCN_01777;ANGLGM_02080;ANNMME_01551;AOBNGK_02631;BDOIEG_00460;BIMHKD_02078;BKKCFL_01625;CHLMLA_00513;CLAKBE_01909;COHMLF_02808;DEPLCM_02191;DHMCKF_01894;DLCDOA_03152;DPCGGD_01482;EAFGGO_00511;EDMCBA_00512;EKEFBI_01151;EKJIGM_01426;EMLMMI_00752;ENEAAA_01383;FDMKAG_00443;FEECBJ_01358;FKBKHM_01719;FNOCKN_00886;GAEFLF_01912;GEIJOK_00640;GGMMDJ_01908 | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) |
Showing 100 of 100 rows.
| rank | feature id | feature type | display name | display label | gene name | product | reference locus tag | reference gene | reference product | annotation confidence | reference identity | reference coverage | interpretation note | annotation evidence | case (CRAB OXA23 positive) present | case (CRAB OXA23 positive) total | case (CRAB OXA23 positive) frequency | control (CSAB OXA23 negative) present | control (CSAB OXA23 negative) total | control (CSAB OXA23 negative) frequency | enriched in | beta | odds ratio | odds ratio ci95 | odds ratio ci95 lower | odds ratio ci95 upper | pyseer pvalue | q value | priority score | annotation source | reference match type | reference location | annotation note | cluster member ids | notes | display product |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | blaOXA~~~blaOXA23 | gene_presence_absence | blaOXA;blaOXA-23 | blaOXA~~~blaOXA23 | A6739_RS00110 | none confidence | blaOXA;blaOXA-23 | OXA-23 family carbapenem-hydrolyzing class D beta-lactamase;OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 | A6739_RS00110 | tyrS | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | none | 22.06 | 1.93 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=22.06; coverage=1.93 | 50 | 50 | 1.0000 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 8.62 | 10201 | 198.5-5.242e+05 | 198.519 | 524185 | 2.63e-16 | 31.8965 | Panaroo/Bakta+GenBank | nucleotide_similarity | 22857..24089 | matched_representative_sequence=blaOXA~~~blaOXA23 | ANNMME_04096;BIMHKD_04132;BKKCFL_03769;CHLMLA_03847;CLAKBE_03911;COHMLF_01621;DEPLCM_04126;DHMCKF_03721;EDMCBA_03845;EKEFBI_03097;EKJIGM_03750;EMLMMI_03100;ENEAAA_03842;FAMOPM_03619;FDMKAG_03800;FKBKHM_03691;FNOCKN_04022;GAEFLF_03820;GEIJOK_03810;GGMMDJ_03860;GJMGGM_04001;GLMFPI_02936;GMFAHH_03899;HENMEN_03849;HKLMOD_03826;HMEENH_03945;IILCLB_03880;JAKFAI_03844;JEJHBL_03804;JFJBEF_03832 | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | ||
| 2 | group_6798 | gene_presence_absence | group_6798 | group_6798 | A6739_RS00100 | none confidence | group_6798 | alpha/beta fold hydrolase | A6739_RS00100 | alpha/beta fold hydrolase | none | 35.04 | 1.33 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=35.04; coverage=1.33 | 50 | 50 | 1.0000 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 8.62 | 10201 | 198.5-5.242e+05 | 198.519 | 524185 | 2.63e-16 | 31.8965 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_6798 | ANNMME_04095;BIMHKD_04131;BKKCFL_03770;CHLMLA_03848;CLAKBE_03910;COHMLF_01622;DEPLCM_04127;DHMCKF_03722;EDMCBA_03844;EKEFBI_03096;EKJIGM_03751;EMLMMI_03099;ENEAAA_03843;FAMOPM_03620;FDMKAG_03801;FKBKHM_03692;FNOCKN_04023;GAEFLF_03821;GEIJOK_03809;GGMMDJ_03859;GJMGGM_04000;GLMFPI_02935;GMFAHH_03900;HENMEN_03848;HKLMOD_03827;HMEENH_03946;IILCLB_03881;JAKFAI_03845;JEJHBL_03805;JFJBEF_03831 | alpha/beta fold hydrolase | |||
| 3 | group_6974 | gene_presence_absence | erpA | group_6974 | A6739_RS00095 | none confidence | erpA | iron-sulfur cluster insertion protein ErpA | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 34.57 | 2.04 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.57; coverage=2.04 | 37 | 50 | 0.7400 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 4.39 | 280.556 | 16.16-4870 | 16.161 | 4870.44 | 2.47e-07 | 17.7394 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_6974 | ANNMME_04094;BIMHKD_04130;BKKCFL_03771;CHLMLA_03849;CLAKBE_03909;DEPLCM_04128;EDMCBA_03843;ENEAAA_03844;FAMOPM_03621;FDMKAG_03802;FKBKHM_03693;GAEFLF_03822;GEIJOK_03808;GGMMDJ_03858;GMFAHH_03898;HENMEN_03847;HMEENH_03947;IILCLB_03882;JAKFAI_03853;JEJHBL_03806;JFJBEF_03830;JOLCOG_03814;KDMBIP_03708;LPJHGC_03780;MOFKMO_03839;NCLOCB_03845;NLLOAD_04129;NMFHKC_03897;NMOMMB_03913;OBKBPL_03940 | iron-sulfur cluster insertion protein ErpA | ||
| 4 | group_1072 | gene_presence_absence | cybC | group_1072 | A6739_RS00065 | none confidence | cybC | HTH tetR-type domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 39.55 | 1.87 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=39.55; coverage=1.87 | 0 | 50 | 0.0000 | 31 | 50 | 0.6200 | controls (CSAB OXA23 negative) | -5.1 | 0.00612918 | 0.0003573-0.1051 | 0.000357306 | 0.105139 | 3.13e-07 | 16.8545 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_1072 | AEAJCM_02724;AEPHHL_00567;AGNLLF_00009;AOBNGK_02616;APKFKK_02786;BCAJEO_02991;CMDNKJ_01400;EAFGGO_03731;EOONHM_00424;FEECBJ_00824;GLGIIC_00364;GMMHOP_00006;GPCEGG_02892;HIOOEO_02713;IJKCGG_00009;JBKHKM_00750;KAIBOE_04024;KNPJLO_00324;LNGIEH_00523;MOFLDA_00571;NADHLL_02115;NANECH_01324;NGKKDC_01072;NKDDBA_02775;OBMFOM_00518;OIJAEJ_02683;OLJICN_03518;OMAPCN_02699;OMJIED_01293;PAJDEF_02776 | cytochrome b562 | ||
| 5 | ridA | gene_presence_absence | ridA | ridA | A6739_RS00005 | none confidence | ridA | RidA family protein | A6739_RS00005 | DsbC family protein | none | 37.22 | 2.29 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.22; coverage=2.29 | 0 | 50 | 0.0000 | 30 | 50 | 0.6000 | controls (CSAB OXA23 negative) | -5.11 | 0.00665476 | 0.0003883-0.114 | 0.000388329 | 0.114042 | 5.44e-07 | 16.4958 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=ridA | AEAJCM_02723;AEPHHL_00566;AGNLLF_00008;AOBNGK_02617;APKFKK_02787;BCAJEO_02992;CMDNKJ_01399;EAFGGO_03732;EOONHM_00425;GLGIIC_00363;GMMHOP_00005;GPCEGG_02891;HIOOEO_02712;IJKCGG_00008;JBKHKM_00751;KAIBOE_04025;KNPJLO_00325;LNGIEH_00524;MOFLDA_00572;NADHLL_02114;NANECH_01323;NGKKDC_01073;NKDDBA_02776;OBMFOM_00517;OIJAEJ_02682;OLJICN_03519;OMAPCN_02698;OMJIED_01292;PAJDEF_02777;PDBBOI_02809 | DsbC family protein | |||
| 6 | group_6742 | gene_presence_absence | group_6742 | group_6742 | A6739_RS00085 | none confidence | group_6742 | hypothetical protein;Nucleoid-associated protein | A6739_RS00085 | putative solute-binding protein | none | 35.04 | 1.05 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=35.04; coverage=1.05 | 32 | 50 | 0.6400 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 4.27 | 177.432 | 10.33-3047 | 10.331 | 3047.34 | 1.53e-06 | 16.2864 | Panaroo/Bakta+GenBank | nucleotide_similarity | 17825..18832 | matched_representative_sequence=group_6742 | ANNMME_00704;BIMHKD_00230;CHLMLA_02687;DEPLCM_00542;EDMCBA_00705;ENEAAA_00440;FDMKAG_01028;FKBKHM_03452;FNOCKN_00733;GEIJOK_00055;GJMGGM_00702;GMFAHH_00378;HENMEN_02573;HKLMOD_00410;IILCLB_00961;JAKFAI_00863;JEJHBL_00055;JGKJBK_00188;KDMBIP_03045;LPJHGC_00055;MDFJDP_00200;NCLOCB_00705;NLLOAD_00542;NMFHKC_01029;OBKBPL_02706;OCKDLB_00055;OILKJE_00682;OMJNPG_00289;OOAOIA_01029;PDKMKB_01030 | putative solute-binding protein | |||
| 7 | group_3104 | gene_presence_absence | rnpA | group_3104 | A6739_RS00035 | none confidence | rnpA | Phage-related membrane protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 32.27 | 0.83 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.27; coverage=0.83 | 32 | 50 | 0.6400 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 4.27 | 177.432 | 10.33-3047 | 10.331 | 3047.34 | 1.53e-06 | 16.2864 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_3104 | ANNMME_00703;BIMHKD_00231;CHLMLA_02686;DEPLCM_00541;EDMCBA_00706;ENEAAA_00441;FDMKAG_01027;FKBKHM_03453;FNOCKN_00732;GEIJOK_00056;GJMGGM_00703;GMFAHH_00379;HENMEN_02574;HKLMOD_00411;IILCLB_00962;JAKFAI_00862;JEJHBL_00056;JGKJBK_00189;KDMBIP_03044;LPJHGC_00056;MDFJDP_00199;NCLOCB_00706;NLLOAD_00541;NMFHKC_01028;OBKBPL_02707;OCKDLB_00056;OILKJE_00683;OMJNPG_00288;OOAOIA_01028;PDKMKB_01029 | ribonuclease P protein component | ||
| 8 | group_2979 | gene_presence_absence | erpA | group_2979 | A6739_RS00095 | none confidence | erpA | HTH tetR-type domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 33.97 | 1.82 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.97; coverage=1.82 | 0 | 50 | 0.0000 | 28 | 50 | 0.5600 | controls (CSAB OXA23 negative) | -5 | 0.00781657 | 0.0004568-0.1338 | 0.000456753 | 0.133768 | 1.46e-06 | 15.8349 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2979 | ACIDLP_03511;AEAJCM_02707;AEPHHL_02594;AGNLLF_02408;AMBHCN_01180;APKFKK_02651;BCAJEO_02675;CNACEH_02768;DPCGGD_02294;EAFGGO_02954;FEECBJ_03563;GLGIIC_01653;GPCEGG_02506;HIOOEO_02696;IJKCGG_03021;JMGEHL_02856;KAIBOE_04045;LABLAA_02705;LAEAMC_03094;NADHLL_00759;NGKKDC_02663;NJCICH_02901;NKDDBA_02640;OIJAEJ_02666;OLJICN_02482;OMAPCN_02627;PAJDEF_02641;PDBBOI_02611 | iron-sulfur cluster insertion protein ErpA | ||
| 9 | hscC | gene_presence_absence | hscC | hscC | A6739_RS00100 | none confidence | hscC | Molecular chaperone HscC | A6739_RS00100 | alpha/beta fold hydrolase | none | 26.31 | 0.53 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=26.31; coverage=0.53 | 0 | 50 | 0.0000 | 29 | 50 | 0.5800 | controls (CSAB OXA23 negative) | -4.98 | 0.00721598 | 0.0004214-0.1236 | 0.000421407 | 0.123563 | 2.26e-06 | 15.7605 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=hscC | AEAJCM_03214;AEPHHL_00718;AGNLLF_00160;AOBNGK_00112;APKFKK_03407;BCAJEO_03232;BDOIEG_00929;EAFGGO_00917;EOONHM_00274;GLGIIC_00515;GMMHOP_00156;GPCEGG_03119;HIOOEO_03399;JBKHKM_00587;KAIBOE_03988;KNPJLO_03612;LABLAA_01378;LAEAMC_00220;LNGIEH_00374;MOFLDA_00421;NGKKDC_00921;NJCICH_01461;NKDDBA_03396;OBMFOM_00681;OIJAEJ_03368;OLJICN_00363;OMAPCN_03189;PAJDEF_03358;PDBBOI_03335 | alpha/beta fold hydrolase | |||
| 10 | group_2610 | gene_presence_absence | phzF; | group_2610 | A6739_RS00050 | none confidence | phzF; | Phenazine biosynthesis protein PhzF;hypothetical protein | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 33.87 | 1.45 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.87; coverage=1.45 | 50 | 50 | 1.0000 | 17 | 50 | 0.3400 | cases (CRAB OXA23 positive) | 4.34 | 193.343 | 11.24-3325 | 11.2409 | 3325.47 | 9.14e-06 | 15.6341 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_2610 | AHMIAP_03307;AIGIAA_00355;ANGLGM_01645;ANNMME_01836;BDOIEG_02865;BIMHKD_00044;BKKCFL_03193;CHLMLA_00904;CLAKBE_02996;CLAKBE_03392;COHMLF_03299;DEPLCM_00728;DHMCKF_03293;DLCDOA_01300;EDMCBA_01153;EKEFBI_00068;EKJIGM_01816;EMLMMI_00068;ENEAAA_00814;FAMOPM_01943;FDMKAG_02588;FEECBJ_03012;FKBKHM_03646;FNOCKN_01989;GAEFLF_02846;GAEFLF_03346;GEIJOK_02697;GGMMDJ_02481;GJMGGM_01943;GLGIIC_01649 | DNA polymerase III subunit beta | ||
| 11 | group_2596 | gene_presence_absence | group_2596 | group_2596 | A6739_RS00005 | none confidence | group_2596 | HTH lysR-type domain-containing protein;hypothetical protein | A6739_RS00005 | DsbC family protein | none | 37.82 | 1.04 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.82; coverage=1.04 | 50 | 50 | 1.0000 | 17 | 50 | 0.3400 | cases (CRAB OXA23 positive) | 4.34 | 193.343 | 11.24-3325 | 11.2409 | 3325.47 | 9.14e-06 | 15.6341 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2596 | AHMIAP_03306;AIGIAA_00356;ANGLGM_01646;ANNMME_01835;BDOIEG_02864;BIMHKD_00043;BKKCFL_03132;CHLMLA_00905;CLAKBE_02995;COHMLF_03300;DEPLCM_00729;DHMCKF_03294;DLCDOA_01301;EDMCBA_01154;EKEFBI_00067;EKJIGM_01815;EMLMMI_00067;ENEAAA_00813;FAMOPM_01942;FDMKAG_02587;FEECBJ_03013;FKBKHM_03647;FNOCKN_01988;GAEFLF_02847;GEIJOK_02696;GGMMDJ_02480;GJMGGM_01944;GLGIIC_01650;GLMFPI_01764;GMFAHH_01093 | DsbC family protein | |||
| 12 | group_6743 | gene_presence_absence | group_6743 | group_6743 | A6739_RS00005 | none confidence | group_6743 | hypothetical protein;DUF4435 domain-containing protein | A6739_RS00005 | DsbC family protein | none | 32.23 | 0.71 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.23; coverage=0.71 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_6743 | ANGLGM_02784;ANNMME_00702;BIMHKD_00232;BKKCFL_01771;CHLMLA_02685;CLAKBE_02086;DEPLCM_00540;EDMCBA_00707;ENEAAA_00442;FAMOPM_02007;FDMKAG_01026;FKBKHM_03628;FNOCKN_00731;GAEFLF_02089;GEIJOK_00057;GJMGGM_00704;GMFAHH_00380;HENMEN_02575;HKLMOD_00412;IILCLB_00963;JAKFAI_00861;JEJHBL_00057;JFJBEF_02464;JGKJBK_00190;JOLCOG_02056;KDMBIP_03043;LPJHGC_00057;MDFJDP_00198;MOFKMO_02235;NCLOCB_00707 | DsbC family protein | |||
| 13 | group_5867 | gene_presence_absence | rpmH | group_5867 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 37.20 | 2.51 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.20; coverage=2.51 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_5867 | ANGLGM_02779;ANNMME_00697;BIMHKD_00237;BKKCFL_01776;CHLMLA_02680;CLAKBE_02081;DEPLCM_00535;EDMCBA_00712;ENEAAA_00447;FAMOPM_02012;FDMKAG_01021;FKBKHM_03623;FNOCKN_00726;GAEFLF_02084;GEIJOK_00062;GJMGGM_00709;GMFAHH_00385;HENMEN_02580;HKLMOD_00417;IILCLB_00968;JAKFAI_00856;JEJHBL_00062;JFJBEF_02459;JGKJBK_00195;JOLCOG_02051;KDMBIP_03038;LPJHGC_00062;MDFJDP_00193;MOFKMO_02240;NCLOCB_00712 | 50S ribosomal protein L34 | ||
| 14 | group_4130 | gene_presence_absence | tatD | group_4130 | A6739_RS00055 | none confidence | tatD | TatD family hydrolase | A6739_RS00055 | recF | DNA replication/repair protein RecF | none | 37.39 | 1.35 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.39; coverage=1.35 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9451..10533 | matched_representative_sequence=group_4130 | ANGLGM_02780;ANNMME_00698;BIMHKD_00236;BKKCFL_01775;CHLMLA_02681;CLAKBE_02082;DEPLCM_00536;EDMCBA_00711;ENEAAA_00446;FAMOPM_02011;FDMKAG_01022;FKBKHM_03624;FNOCKN_00727;GAEFLF_02085;GEIJOK_00061;GJMGGM_00708;GMFAHH_00384;HENMEN_02579;HKLMOD_00416;IILCLB_00967;JAKFAI_00857;JEJHBL_00061;JFJBEF_02460;JGKJBK_00194;JOLCOG_02052;KDMBIP_03039;LPJHGC_00061;MDFJDP_00194;MOFKMO_02239;NCLOCB_00711 | DNA replication/repair protein RecF | ||
| 15 | group_4063 | gene_presence_absence | cybC | group_4063 | A6739_RS00065 | none confidence | cybC | DUF5610 domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 33.33 | 1.31 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.33; coverage=1.31 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_4063 | ANGLGM_02782;ANNMME_00700;BIMHKD_00234;BKKCFL_01773;CHLMLA_02683;CLAKBE_02084;DEPLCM_00538;EDMCBA_00709;ENEAAA_00444;FAMOPM_02009;FDMKAG_01024;FKBKHM_03626;FNOCKN_00729;GAEFLF_02087;GEIJOK_00059;GJMGGM_00706;GMFAHH_00382;HENMEN_02577;HKLMOD_00414;IILCLB_00965;JAKFAI_00859;JEJHBL_00059;JFJBEF_02462;JGKJBK_00192;JOLCOG_02054;KDMBIP_03041;LPJHGC_00059;MDFJDP_00196;MOFKMO_02237;NCLOCB_00709 | cytochrome b562 | ||
| 16 | group_2369 | gene_presence_absence | group_2369 | group_2369 | A6739_RS00100 | none confidence | group_2369 | 7-cyano-7-deazaguanine synthase | A6739_RS00100 | alpha/beta fold hydrolase | none | 29.98 | 0.75 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=29.98; coverage=0.75 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_2369 | ANGLGM_02781;ANNMME_00699;BIMHKD_00235;BKKCFL_01774;CHLMLA_02682;CLAKBE_02083;DEPLCM_00537;EDMCBA_00710;ENEAAA_00445;FAMOPM_02010;FDMKAG_01023;FKBKHM_03625;FNOCKN_00728;GAEFLF_02086;GEIJOK_00060;GJMGGM_00707;GMFAHH_00383;HENMEN_02578;HKLMOD_00415;IILCLB_00966;JAKFAI_00858;JEJHBL_00060;JFJBEF_02461;JGKJBK_00193;JOLCOG_02053;KDMBIP_03040;LPJHGC_00060;MDFJDP_00195;MOFKMO_02238;NCLOCB_00710 | alpha/beta fold hydrolase | |||
| 17 | group_1038 | gene_presence_absence | mnmE | group_1038 | A6739_RS00020 | none confidence | mnmE | KAP NTPase domain-containing protein | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 25.46 | 0.61 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=25.46; coverage=0.61 | 40 | 50 | 0.8000 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.31 | 74.8286 | 17.71-316.2 | 17.7107 | 316.154 | 7.47e-06 | 14.3522 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2023..3378) | matched_representative_sequence=group_1038 | ANGLGM_02783;ANNMME_00701;BIMHKD_00233;BKKCFL_01772;CHLMLA_02684;CLAKBE_02085;DEPLCM_00539;EDMCBA_00708;ENEAAA_00443;FAMOPM_02008;FDMKAG_01025;FKBKHM_03627;FNOCKN_00730;GAEFLF_02088;GEIJOK_00058;GJMGGM_00705;GMFAHH_00381;HENMEN_02576;HKLMOD_00413;IILCLB_00964;JAKFAI_00860;JEJHBL_00058;JFJBEF_02463;JGKJBK_00191;JOLCOG_02055;KDMBIP_03042;LPJHGC_00058;MDFJDP_00197;MOFKMO_02236;NCLOCB_00708 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 18 | group_7386 | gene_presence_absence | abc-f | group_7386 | A6739_RS00075 | none confidence | abc-f | hypothetical protein;molecular chaperone;J domain-containing protein | A6739_RS00075 | abc-f | ribosomal protection-like ABC-F family protein | none | 27.17 | 0.61 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.17; coverage=0.61 | 0 | 50 | 0.0000 | 28 | 50 | 0.5600 | controls (CSAB OXA23 negative) | -4.24 | 0.00781657 | 0.0004568-0.1338 | 0.000456753 | 0.133768 | 5.67e-05 | 14.2457 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(14377..16308) | matched_representative_sequence=group_7386 | AEAJCM_02499;AEAJCM_03215;AEPHHL_00719;AGNLLF_00161;AOBNGK_00113;APKFKK_02567;APKFKK_03408;BCAJEO_02543;BCAJEO_03233;BDOIEG_00930;EAFGGO_00916;EOONHM_00273;GLGIIC_00516;GMMHOP_00157;GPCEGG_02345;GPCEGG_03120;HIOOEO_02488;HIOOEO_03400;JBKHKM_00586;LABLAA_01379;LAEAMC_00221;LNGIEH_00373;MOFLDA_00420;NADHLL_03426;NGKKDC_00920;NJCICH_01460;NKDDBA_02555;NKDDBA_03397;OBMFOM_00682;OIJAEJ_02458 | ribosomal protection-like ABC-F family protein | ||
| 19 | group_6799 | gene_presence_absence | yopX | group_6799 | A6739_RS00080 | none confidence | yopX | YopX protein domain-containing protein | A6739_RS00080 | putative solute-binding protein | none | 36.57 | 1.96 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.57; coverage=1.96 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -5.16 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 1.35e-06 | 14.1960 | Panaroo/Bakta+GenBank | nucleotide_similarity | 16565..17569 | matched_representative_sequence=group_6799 | AEPHHL_02070;AGNLLF_02684;DLCDOA_02796;EOONHM_01407;GLGIIC_02476;GMMHOP_01641;JBKHKM_03693;KAIBOE_03973;LNGIEH_02289;MOFLDA_01218;NGKKDC_02373;NJCICH_03028;OBMFOM_03711;OLJICN_02125 | putative solute-binding protein | |||
| 20 | group_2705 | gene_presence_absence | rnpA | group_2705 | A6739_RS00035 | none confidence | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 37.36 | 1.80 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.36; coverage=1.80 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -5.16 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 1.35e-06 | 14.1960 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_2705 | AEPHHL_02068;AGNLLF_02682;DLCDOA_02798;EOONHM_01406;GLGIIC_02477;GMMHOP_01640;JBKHKM_03694;KAIBOE_03975;LNGIEH_02290;MOFLDA_01219;NGKKDC_02375;NJCICH_03030;OBMFOM_03710;OLJICN_02123 | ribonuclease P protein component | ||
| 21 | group_2631 | gene_presence_absence | abc-f | group_2631 | A6739_RS00075 | none confidence | abc-f | Betaine/carnitine/choline transporter (BCCT) family transporter | A6739_RS00075 | abc-f | ribosomal protection-like ABC-F family protein | none | 26.99 | 0.89 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=26.99; coverage=0.89 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (CRAB OXA23 positive) | 8.9 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 1.61e-07 | 14.1094 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(14377..16308) | matched_representative_sequence=group_2631 | AHMIAP_01331;AIGIAA_02836;CHLMLA_02698;COHMLF_00667;DHMCKF_00974;EDMCBA_02679;EKEFBI_02306;EKJIGM_00999;EMLMMI_02310;ENEAAA_02813;FDMKAG_02369;FKBKHM_01914;FNOCKN_00050;GEIJOK_02369;GGMMDJ_01052;GJMGGM_00228;GMFAHH_02704;HENMEN_02668;HKLMOD_02576;HMEENH_00536;IILCLB_00259;JAKFAI_02861;JDELMK_00050;JEJHBL_02154;JFJBEF_01670;JGKJBK_01711;JMCNGE_02121;JOLCOG_01009;KAIBOE_02413;KDMBIP_01656 | ribosomal protection-like ABC-F family protein | ||
| 22 | group_2693 | gene_presence_absence | cybC | group_2693 | A6739_RS00065 | none confidence | cybC | Phage head morphogenesis domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 35.70 | 0.83 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.70; coverage=0.83 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_2693 | AEAJCM_02218;AEPHHL_01015;APKFKK_02302;BCAJEO_02346;EAFGGO_00673;EOONHM_01193;GMMHOP_01821;GPCEGG_02148;HIOOEO_02207;KAIBOE_03660;LABLAA_00932;MOFLDA_01265;NGKKDC_00623;NKDDBA_02206;OIJAEJ_02177;OLJICN_00066;OMAPCN_02193;OMJIED_03257;PAJDEF_02207;PDBBOI_02175 | cytochrome b562 | ||
| 23 | group_2386 | gene_presence_absence | group_2386 | group_2386 | A6739_RS00015 | none confidence | group_2386 | DUF3168 domain-containing protein | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 37.71 | 1.75 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.71; coverage=1.75 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_2386 | AEAJCM_02226;AEPHHL_01024;APKFKK_02310;BCAJEO_02354;EAFGGO_00665;EOONHM_01185;GMMHOP_01813;GPCEGG_02156;HIOOEO_02215;KAIBOE_03669;LABLAA_00923;MOFLDA_01257;NGKKDC_00614;NKDDBA_02214;OIJAEJ_02185;OLJICN_00057;OMAPCN_02201;OMJIED_03267;PAJDEF_02215;PDBBOI_02167 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 24 | group_2274 | gene_presence_absence | erpA | group_2274 | A6739_RS00095 | none confidence | erpA | HK97 gp10 family phage protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 33.59 | 1.75 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.59; coverage=1.75 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2274 | AEAJCM_02225;AEPHHL_01023;APKFKK_02309;BCAJEO_02353;EAFGGO_00666;EOONHM_01186;GMMHOP_01814;GPCEGG_02155;HIOOEO_02214;KAIBOE_03668;LABLAA_00924;MOFLDA_01258;NGKKDC_00615;NKDDBA_02213;OIJAEJ_02184;OLJICN_00058;OMAPCN_02200;OMJIED_03266;PAJDEF_02214;PDBBOI_02168 | iron-sulfur cluster insertion protein ErpA | ||
| 25 | group_2019 | gene_presence_absence | group_2019 | group_2019 | A6739_RS00005 | none confidence | group_2019 | hypothetical protein;Glutamate 5-kinase | A6739_RS00005 | DsbC family protein | none | 38.65 | 2.80 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.65; coverage=2.80 | 0 | 50 | 0.0000 | 20 | 50 | 0.4000 | controls (CSAB OXA23 negative) | -4.99 | 0.0147307 | 0.0008596-0.2524 | 0.00085959 | 0.25244 | 1.19e-05 | 14.0095 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2019 | AEAJCM_02224;AEPHHL_01021;APKFKK_02308;BCAJEO_02352;EAFGGO_00667;EOONHM_01188;GMMHOP_01816;GPCEGG_02154;HIOOEO_02213;KAIBOE_03666;LABLAA_00926;MOFLDA_01260;NGKKDC_00617;NKDDBA_02212;OIJAEJ_02183;OLJICN_00060;OMAPCN_02199;OMJIED_03264;PAJDEF_02213;PDBBOI_02169 | DsbC family protein | |||
| 26 | group_6913 | gene_presence_absence | dmeF | group_6913 | A6739_RS00010 | none confidence | dmeF | hypothetical protein;GmrSD restriction endonucleases N-terminal domain-containing protein | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | none | 38.08 | 1.03 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.08; coverage=1.03 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(681..1655) | matched_representative_sequence=group_6913 | ANGLGM_01092;ANNMME_02126;BIMHKD_01022;BKKCFL_00646;CLAKBE_00109;DEPLCM_00110;EKEFBI_01536;EMLMMI_01306;FAMOPM_00262;FDMKAG_01766;GAEFLF_00262;GEIJOK_02001;HMEENH_00377;IILCLB_01762;JEJHBL_01766;JFJBEF_00264;JGKJBK_01156;JGKJBK_01157;JOLCOG_00575;KDMBIP_01474;LPJHGC_00798;MDFJDP_01262;MDFJDP_01263;MOFKMO_00600;NLLOAD_00284;NMFHKC_02037;NMOMMB_00262;OBKBPL_01379;OCKDLB_02038;OMJNPG_01811 | CDF family Co(II)/Ni(II) efflux transporterDmeF | ||
| 27 | group_4986 | gene_presence_absence | erpA | group_4986 | A6739_RS00095 | none confidence | erpA | Fimbrial protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 40.74 | 1.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.74; coverage=1.69 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_4986 | ANGLGM_01034;ANNMME_02068;BIMHKD_00964;BKKCFL_00588;CLAKBE_00167;DEPLCM_00168;EKEFBI_01478;EMLMMI_01364;FAMOPM_00204;FDMKAG_01824;GAEFLF_00204;GEIJOK_01943;HMEENH_00319;IILCLB_01704;JEJHBL_01824;JFJBEF_00206;JGKJBK_01098;JOLCOG_00633;KDMBIP_01416;LPJHGC_00740;MDFJDP_01204;MOFKMO_00658;NLLOAD_00226;NMFHKC_01979;NMOMMB_00204;OBKBPL_01321;OCKDLB_01980;OMJNPG_01869;OOAOIA_01368;PDKMKB_01159 | iron-sulfur cluster insertion protein ErpA | ||
| 28 | group_4765 | gene_presence_absence | group_4765 | group_4765 | A6739_RS00070 | none confidence | group_4765 | Lipoprotein | A6739_RS00070 | VTT domain-containing protein | none | 37.67 | 1.90 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.67; coverage=1.90 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_4765 | ANGLGM_00955;ANNMME_00812;BIMHKD_00885;BKKCFL_00433;CLAKBE_00246;DEPLCM_00247;EKEFBI_01399;EMLMMI_01443;FAMOPM_00125;FDMKAG_01903;GAEFLF_00125;GEIJOK_01864;HMEENH_00240;IILCLB_00772;JEJHBL_01903;JFJBEF_00127;JGKJBK_01019;JOLCOG_00712;KDMBIP_01337;LPJHGC_00661;MDFJDP_01125;MOFKMO_00737;NLLOAD_00147;NMFHKC_01900;NMOMMB_00125;OBKBPL_01242;OCKDLB_01901;OMJNPG_00829;OOAOIA_01290;PDKMKB_01238 | VTT domain-containing protein | |||
| 29 | group_4672 | gene_presence_absence | group_4672 | group_4672 | A6739_RS00005 | none confidence | group_4672 | HTH tetR-type domain-containing protein | A6739_RS00005 | DsbC family protein | none | 41.16 | 1.63 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=41.16; coverage=1.63 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_4672 | ANGLGM_00952;ANNMME_00815;BIMHKD_00882;BKKCFL_00436;CLAKBE_00249;DEPLCM_00250;EKEFBI_01396;EMLMMI_01446;FAMOPM_00122;FDMKAG_01906;GAEFLF_00122;GEIJOK_01861;HMEENH_00237;IILCLB_00769;JEJHBL_01906;JFJBEF_00124;JGKJBK_01016;JOLCOG_00715;KDMBIP_01334;LPJHGC_00658;MDFJDP_01122;MOFKMO_00740;NLLOAD_00144;NMFHKC_01897;NMOMMB_00122;OBKBPL_01239;OCKDLB_01898;OMJNPG_00832;OOAOIA_01287;PDKMKB_01241 | DsbC family protein | |||
| 30 | group_4434 | gene_presence_absence | group_4434 | group_4434 | A6739_RS00005 | none confidence | group_4434 | Nucleotidyltransferase | A6739_RS00005 | DsbC family protein | none | 42.86 | 1.42 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=42.86; coverage=1.42 | 30 | 50 | 0.6000 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.7 | 49.0976 | 8.808-273.7 | 8.80803 | 273.679 | 1.28e-05 | 13.5104 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_4434 | ANGLGM_01093;ANNMME_02127;BIMHKD_01023;BKKCFL_00647;CLAKBE_00108;DEPLCM_00109;EKEFBI_01537;EMLMMI_01305;FAMOPM_00263;FDMKAG_01765;GAEFLF_00263;GEIJOK_02002;HMEENH_00378;IILCLB_01763;JEJHBL_01765;JFJBEF_00265;JGKJBK_01158;JOLCOG_00574;KDMBIP_01475;LPJHGC_00799;MDFJDP_01264;MOFKMO_00599;NLLOAD_00285;NMFHKC_02038;NMOMMB_00263;OBKBPL_01380;OCKDLB_02039;OMJNPG_01810;OOAOIA_01427;PDKMKB_01100 | DsbC family protein | |||
| 31 | group_2655 | gene_presence_absence | group_2655 | group_2655 | A6739_RS00005 | none confidence | group_2655 | hypothetical protein;Abasic site processing protein | A6739_RS00005 | DsbC family protein | none | 33.66 | 1.40 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=33.66; coverage=1.40 | 0 | 50 | 0.0000 | 11 | 50 | 0.2200 | controls (CSAB OXA23 negative) | -5.27 | 0.0340077 | 0.001944-0.595 | 0.00194385 | 0.594968 | 3.64e-06 | 13.3169 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2655 | AEPHHL_01588;AEPHHL_01589;AGNLLF_02993;AGNLLF_02994;BDOIEG_02089;CNACEH_02189;JBKHKM_01691;JMGEHL_02003;KAIBOE_03910;KAIBOE_03911;LNGIEH_02759;LNGIEH_02760;NGKKDC_01667;NGKKDC_01668;OBMFOM_01719;OLJICN_01664;OLJICN_01665 | DsbC family protein | |||
| 32 | group_7489 | gene_presence_absence | group_7489 | group_7489 | A6739_RS00015 | none confidence | group_7489 | Thioesterase | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 38.13 | 1.72 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.13; coverage=1.72 | 50 | 50 | 1.0000 | 29 | 50 | 0.5800 | cases (CRAB OXA23 positive) | 4.35 | 73.6102 | 4.299-1260 | 4.29877 | 1260.47 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_7489 | ACIDLP_01295;AHMIAP_01382;AIGIAA_03052;AMBHCN_00546;ANGLGM_00890;ANNMME_01076;BDOIEG_00984;BIMHKD_01493;BKKCFL_00384;CHLMLA_02750;CLAKBE_00593;CMDNKJ_02236;CNACEH_01833;COHMLF_00616;DEPLCM_01482;DHMCKF_01025;DLCDOA_00574;DPCGGD_01108;EDMCBA_03624;EKEFBI_02265;EKJIGM_01050;EMLMMI_02269;ENEAAA_03631;EOONHM_00219;FAMOPM_00755;FDMKAG_02410;FKBKHM_00206;FNOCKN_00101;GAEFLF_00757;GEIJOK_02328 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 33 | group_1250 | gene_presence_absence | cybC | group_1250 | A6739_RS00065 | none confidence | cybC | HTH tetR-type domain-containing protein | A6739_RS00065 | cybC | cytochrome b562 | none | 32.36 | 1.42 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.36; coverage=1.42 | 50 | 50 | 1.0000 | 29 | 50 | 0.5800 | cases (CRAB OXA23 positive) | 4.35 | 73.6102 | 4.299-1260 | 4.29877 | 1260.47 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_1250 | ACIDLP_01294;AHMIAP_01381;AIGIAA_03051;AMBHCN_00545;ANGLGM_00891;ANNMME_01077;BDOIEG_00985;BIMHKD_01492;BKKCFL_00385;CHLMLA_02749;CLAKBE_00592;CMDNKJ_02237;CNACEH_01834;COHMLF_00617;DEPLCM_01483;DHMCKF_01024;DLCDOA_00573;DPCGGD_01107;EDMCBA_03623;EKEFBI_02266;EKJIGM_01049;EMLMMI_02270;ENEAAA_03630;EOONHM_00218;FAMOPM_00756;FDMKAG_02409;FKBKHM_00205;FNOCKN_00100;GAEFLF_00758;GEIJOK_02329 | cytochrome b562 | ||
| 34 | group_4597 | gene_presence_absence | rnpA | group_4597 | A6739_RS00035 | none confidence | rnpA | Flavodoxin-like fold domain-containing protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 36.53 | 1.56 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.53; coverage=1.56 | 0 | 50 | 0.0000 | 21 | 50 | 0.4200 | controls (CSAB OXA23 negative) | -4.35 | 0.0135851 | 0.0007934-0.2326 | 0.000793358 | 0.232624 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_4597 | AEAJCM_02553;AEPHHL_00772;AGNLLF_00214;AOBNGK_00168;APKFKK_02513;BCAJEO_02597;EAFGGO_00862;FEECBJ_00621;GPCEGG_02399;HIOOEO_02542;LABLAA_01432;LAEAMC_00274;NANECH_01592;NGKKDC_00867;NJCICH_01406;NKDDBA_02501;OIJAEJ_02512;OLJICN_00309;OMAPCN_02528;PAJDEF_02542;PDBBOI_02512 | ribonuclease P protein component | ||
| 35 | group_3740 | gene_presence_absence | recF | group_3740 | A6739_RS00055 | none confidence | recF | HTH lysR-type domain-containing protein | A6739_RS00055 | recF | DNA replication/repair protein RecF | none | 35.15 | 1.23 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.15; coverage=1.23 | 0 | 50 | 0.0000 | 21 | 50 | 0.4200 | controls (CSAB OXA23 negative) | -4.35 | 0.0135851 | 0.0007934-0.2326 | 0.000793358 | 0.232624 | 8.21e-05 | 13.2875 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9451..10533 | matched_representative_sequence=group_3740 | AEAJCM_02554;AEPHHL_00773;AGNLLF_00215;AOBNGK_00169;APKFKK_02512;BCAJEO_02598;EAFGGO_00861;FEECBJ_00620;GPCEGG_02400;HIOOEO_02543;LABLAA_01433;LAEAMC_00275;NANECH_01593;NGKKDC_00866;NJCICH_01405;NKDDBA_02500;OIJAEJ_02513;OLJICN_00308;OMAPCN_02529;PAJDEF_02543;PDBBOI_02513 | DNA replication/repair protein RecF | ||
| 36 | group_7091 | gene_presence_absence | rpmH | group_7091 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 47.20 | 3.43 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=47.20; coverage=3.43 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_7091 | AIGIAA_03064;ANNMME_00710;BIMHKD_00224;CHLMLA_02105;DEPLCM_00548;EDMCBA_00703;EKEFBI_00247;EMLMMI_00247;ENEAAA_00438;FDMKAG_01030;FKBKHM_03450;FNOCKN_00735;GEIJOK_00053;GJMGGM_00700;GMFAHH_00376;HENMEN_02075;HKLMOD_00408;HMEENH_02119;IILCLB_00959;JAKFAI_00865;JDELMK_01989;JEJHBL_00053;JGKJBK_00186;KDMBIP_03047;LPJHGC_00053;MDFJDP_00202;NCLOCB_00703;NLLOAD_00548;NMFHKC_01031;OBKBPL_02704 | 50S ribosomal protein L34 | ||
| 37 | group_6247 | gene_presence_absence | group_6247 | group_6247 | A6739_RS00015 | none confidence | group_6247 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 37.13 | 3.33 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.13; coverage=3.33 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_6247 | AIGIAA_03072;ANNMME_00719;BIMHKD_00215;CHLMLA_02097;DEPLCM_00557;EDMCBA_00695;EKEFBI_00239;EMLMMI_00239;ENEAAA_00430;FDMKAG_01038;FKBKHM_03442;FNOCKN_00743;GEIJOK_00045;GJMGGM_00692;GMFAHH_00368;HENMEN_02067;HKLMOD_00400;HMEENH_02127;IILCLB_00951;JAKFAI_00873;JDELMK_01997;JEJHBL_00045;JGKJBK_00178;KDMBIP_03055;LPJHGC_00045;MDFJDP_00210;NCLOCB_00695;NLLOAD_00557;NMFHKC_01039;OBKBPL_02696 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 38 | group_5866 | gene_presence_absence | erpA | group_5866 | A6739_RS00095 | none confidence | erpA | iron-sulfur cluster insertion protein ErpA | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 40.98 | 3.58 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.98; coverage=3.58 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_5866 | AIGIAA_03066;ANNMME_00712;BIMHKD_00222;CHLMLA_02103;DEPLCM_00550;EDMCBA_00701;EKEFBI_00245;EMLMMI_00245;ENEAAA_00436;FDMKAG_01032;FKBKHM_03448;FNOCKN_00737;GEIJOK_00051;GJMGGM_00698;GMFAHH_00374;HENMEN_02073;HKLMOD_00406;HMEENH_02121;IILCLB_00957;JAKFAI_00867;JDELMK_01991;JEJHBL_00051;JGKJBK_00184;KDMBIP_03049;LPJHGC_00051;MDFJDP_00204;NCLOCB_00701;NLLOAD_00550;NMFHKC_01033;OBKBPL_02702 | iron-sulfur cluster insertion protein ErpA | ||
| 39 | group_1099 | gene_presence_absence | dnaN | group_1099 | A6739_RS00050 | none confidence | dnaN | DNA polymerase III subunit beta | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 29.01 | 0.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.01; coverage=0.69 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_1099 | AIGIAA_03063;ANNMME_00709;BIMHKD_00225;CHLMLA_02106;CHLMLA_02688;DEPLCM_00547;EDMCBA_00704;EKEFBI_00248;EMLMMI_00248;ENEAAA_00439;FDMKAG_01029;FKBKHM_03451;FNOCKN_00734;GEIJOK_00054;GJMGGM_00701;GMFAHH_00377;HENMEN_02572;HKLMOD_00409;HMEENH_02118;IILCLB_00960;JAKFAI_00864;JDELMK_01988;JEJHBL_00054;JGKJBK_00187;KDMBIP_03046;LPJHGC_00054;MDFJDP_00201;NCLOCB_00704;NLLOAD_00547;NMFHKC_01030 | DNA polymerase III subunit beta | ||
| 40 | group_657 | gene_presence_absence | rpmH | group_657 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 56.00 | 6.67 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=56.00; coverage=6.67 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_6572 | AIGIAA_03067;ANNMME_00713;BIMHKD_00221;CHLMLA_02102;DEPLCM_00551;EDMCBA_00700;EKEFBI_00244;EMLMMI_00244;ENEAAA_00435;FDMKAG_01033;FKBKHM_03447;FNOCKN_00738;GEIJOK_00050;GJMGGM_00697;GMFAHH_00373;HENMEN_02072;HKLMOD_00405;HMEENH_02122;IILCLB_00956;JAKFAI_00868;JDELMK_01992;JEJHBL_00050;JGKJBK_00183;KDMBIP_03050;LPJHGC_00050;MDFJDP_00205;NCLOCB_00700;NLLOAD_00551;NMFHKC_01034;OBKBPL_02701 | 50S ribosomal protein L34 | ||
| 41 | group_454 | gene_presence_absence | rnpA | group_454 | A6739_RS00035 | none confidence | rnpA | DUF927 domain-containing protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 46.06 | 1.84 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.06; coverage=1.84 | 36 | 50 | 0.7200 | 2 | 50 | 0.0400 | cases (CRAB OXA23 positive) | 3.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 2.71e-05 | 13.1769 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_4545 | AIGIAA_03065;ANNMME_00711;BIMHKD_00223;CHLMLA_02104;DEPLCM_00549;EDMCBA_00702;EKEFBI_00246;EMLMMI_00246;ENEAAA_00437;FDMKAG_01031;FKBKHM_03449;FNOCKN_00736;GEIJOK_00052;GJMGGM_00699;GMFAHH_00375;HENMEN_02074;HKLMOD_00407;HMEENH_02120;IILCLB_00958;JAKFAI_00866;JDELMK_01990;JEJHBL_00052;JGKJBK_00185;KDMBIP_03048;LPJHGC_00052;MDFJDP_00203;NCLOCB_00702;NLLOAD_00549;NMFHKC_01032;OBKBPL_02703 | ribonuclease P protein component | ||
| 42 | group_773 | gene_presence_absence | group_773 | group_773 | A6739_RS00015 | none confidence | group_773 | hypothetical protein;Bacteriophage protein | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 41.33 | 2.26 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=41.33; coverage=2.26 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.67 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 1.07e-05 | 13.1282 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_773 | ACIDLP_03862;AEAJCM_00299;AHMIAP_02620;AIGIAA_01386;AMBHCN_00809;ANGLGM_03378;ANNMME_03368;APKFKK_00300;BCAJEO_00301;BDOIEG_02078;BIMHKD_03643;BKKCFL_02468;CHLMLA_03844;CLAKBE_02772;COHMLF_02619;DEPLCM_03648;DHMCKF_02998;DLCDOA_00935;DPCGGD_03835;EDMCBA_03838;EKEFBI_03180;EKJIGM_02827;EMLMMI_03183;ENEAAA_03837;FAMOPM_02761;FDMKAG_01093;FKBKHM_03687;FNOCKN_03068;GAEFLF_02678;GEIJOK_01647 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 43 | group_1184 | gene_presence_absence | gyrB | group_1184 | A6739_RS00060 | none confidence | gyrB | Sulfatase N-terminal domain-containing protein | A6739_RS00060 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | none | 29.20 | 0.58 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.20; coverage=0.58 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.51 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 2.77e-05 | 13.0202 | Panaroo/Bakta+GenBank | nucleotide_similarity | 10586..13054 | matched_representative_sequence=group_1184 | AEPHHL_03691;AGNLLF_03342;AOBNGK_01987;CMDNKJ_01810;CNACEH_03015;FEECBJ_03328;JEOFII_02388;JMGEHL_02781;KNPJLO_02719;NADHLL_01345;NANECH_02759;NGKKDC_03683;OKKAGP_02240;OLJICN_03686;OMJIED_00718 | DNA topoisomerase (ATP-hydrolyzing) subunit B | ||
| 44 | group_4461 | gene_presence_absence | lysE | group_4461 | A6739_RS00070 | none confidence | lysE | Amino acid transporter LysE | A6739_RS00070 | VTT domain-containing protein | none | 42.19 | 1.44 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.19; coverage=1.44 | 0 | 50 | 0.0000 | 7 | 50 | 0.1400 | controls (CSAB OXA23 negative) | -5.43 | 0.0574257 | 0.003187-1.035 | 0.00318726 | 1.03466 | 1.35e-06 | 12.9918 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_4461 | AEPHHL_00469;AGNLLF_00734;KAIBOE_04029;NADHLL_03049;NGKKDC_00090;OLJICN_02562;OMJIED_02412 | VTT domain-containing protein | |||
| 45 | group_283 | gene_presence_absence | group_283 | group_283 | A6739_RS00005 | none confidence | group_283 | Long-chain fatty acid transporter | A6739_RS00005 | DsbC family protein | none | 38.86 | 1.40 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.86; coverage=1.40 | 50 | 50 | 1.0000 | 37 | 50 | 0.7400 | cases (CRAB OXA23 positive) | 4.5 | 36.36 | 2.094-631.2 | 2.09447 | 631.209 | 1.65e-05 | 12.9668 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_2838 | ACIDLP_01986;AEAJCM_00402;AHMIAP_02731;AIGIAA_00490;AMBHCN_02887;ANGLGM_02564;ANNMME_03334;AOBNGK_01261;APKFKK_00583;BCAJEO_00676;BDOIEG_01863;BIMHKD_01416;BKKCFL_02858;CHLMLA_02526;CLAKBE_01587;CMDNKJ_00849;CNACEH_02935;COHMLF_01207;DEPLCM_01698;DHMCKF_02049;DLCDOA_02787;DPCGGD_02897;EAFGGO_01857;EDMCBA_02616;EKEFBI_03434;EKJIGM_02412;EMLMMI_03437;ENEAAA_02764;FAMOPM_02922;FDMKAG_02742 | DsbC family protein | |||
| 46 | group_285 | gene_presence_absence | erpA | group_285 | A6739_RS00095 | none confidence | erpA | Long-chain fatty acid transporter | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 46.43 | 1.61 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.43; coverage=1.61 | 0 | 50 | 0.0000 | 13 | 50 | 0.2600 | controls (CSAB OXA23 negative) | -4.5 | 0.0275028 | 0.001584-0.4774 | 0.00158426 | 0.477448 | 1.65e-05 | 12.9668 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2851 | AEPHHL_02079;AGNLLF_02693;EOONHM_01416;FEECBJ_03093;GLGIIC_02467;GMMHOP_01650;JBKHKM_03684;LNGIEH_02280;MOFLDA_01209;NGKKDC_02364;OBMFOM_03720;OLJICN_02134;OMJIED_00030 | iron-sulfur cluster insertion protein ErpA | ||
| 47 | group_6231 | gene_presence_absence | rnpA | group_6231 | A6739_RS00035 | none confidence | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 41.58 | 4.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=41.58; coverage=4.69 | 0 | 50 | 0.0000 | 16 | 50 | 0.3200 | controls (CSAB OXA23 negative) | -4.98 | 0.0207021 | 0.001202-0.3567 | 0.00120151 | 0.356698 | 4.29e-05 | 12.9616 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_6231 | AEAJCM_02219;AEPHHL_01016;APKFKK_02303;BCAJEO_02347;EAFGGO_00672;GPCEGG_02149;HIOOEO_02208;KAIBOE_03661;LABLAA_00931;NGKKDC_00622;NKDDBA_02207;OIJAEJ_02178;OLJICN_00065;OMAPCN_02194;PAJDEF_02208;PDBBOI_02174 | ribonuclease P protein component | ||
| 48 | group_457 | gene_presence_absence | dnaA | group_457 | A6739_RS00045 | none confidence | dnaA | Terminase | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 36.91 | 1.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.91; coverage=1.54 | 0 | 50 | 0.0000 | 16 | 50 | 0.3200 | controls (CSAB OXA23 negative) | -4.98 | 0.0207021 | 0.001202-0.3567 | 0.00120151 | 0.356698 | 4.29e-05 | 12.9616 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_4574 | AEAJCM_02216;AEPHHL_01013;APKFKK_02300;BCAJEO_02344;EAFGGO_00675;GPCEGG_02146;HIOOEO_02205;KAIBOE_03658;LABLAA_00934;NGKKDC_00625;NKDDBA_02204;OIJAEJ_02175;OLJICN_00068;OMAPCN_02191;PAJDEF_02205;PDBBOI_02177 | chromosomal replication initiator protein DnaA | ||
| 49 | group_6554 | gene_presence_absence | erpA | group_6554 | A6739_RS00095 | none confidence | erpA | iron-sulfur cluster insertion protein ErpA | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 30.84 | 7.62 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.84; coverage=7.62 | 49 | 50 | 0.9800 | 17 | 50 | 0.3400 | cases (CRAB OXA23 positive) | 3.1 | 63.1714 | 11.26-354.3 | 11.2644 | 354.268 | 0.000105 | 12.9600 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=9_refound_46 | 12_refound_67;16_refound_91;17_refound_104;18_refound_121;19_refound_127;1_refound_7;20_refound_137;24_refound_169;35_refound_235;38_refound_268;46_refound_339;47_refound_344;48_refound_350;56_refound_404;57_refound_414;62_refound_460;69_refound_504;6_refound_37;70_refound_514;80_refound_588;84_refound_614;94_refound_686;97_refound_710;9_refound_46;ANGLGM_01552;ANNMME_00648;AOBNGK_00920;BIMHKD_00286;BKKCFL_00903;CLAKBE_01252 | iron-sulfur cluster insertion protein ErpA | ||
| 50 | group_2709 | gene_presence_absence | group_2709 | group_2709 | A6739_RS00100 | none confidence | group_2709 | Translesion error-prone DNA polymerase V autoproteolytic subunit | A6739_RS00100 | alpha/beta fold hydrolase | none | 36.82 | 1.80 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=36.82; coverage=1.80 | 1 | 50 | 0.0200 | 31 | 50 | 0.6200 | controls (CSAB OXA23 negative) | -3.39 | 0.018759 | 0.00336-0.1047 | 0.00335985 | 0.104737 | 6.18e-05 | 12.9453 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_2709 | AEAJCM_03522;AEPHHL_01587;AGNLLF_02992;APKFKK_03477;BCAJEO_03539;BDOIEG_02088;CNACEH_02188;DLCDOA_00102;EAFGGO_02328;GLMFPI_03294;GMMHOP_00295;GPCEGG_03664;HIOOEO_03469;IJKCGG_01026;JBKHKM_01692;JEOFII_00702;JMGEHL_02004;KAIBOE_03909;LAEAMC_00097;LNGIEH_02758;MOFLDA_00282;NANECH_01068;NGKKDC_01666;NJCICH_02037;NKDDBA_03466;OBMFOM_01720;OIJAEJ_03417;OKKAGP_03228;OLJICN_01666;OMAPCN_03497 | alpha/beta fold hydrolase | |||
| 51 | group_2185 | gene_presence_absence | group_2185 | group_2185 | A6739_RS00100 | none confidence | group_2185 | hypothetical protein;HTH tetR-type domain-containing protein | A6739_RS00100 | alpha/beta fold hydrolase | none | 34.67 | 1.54 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.67; coverage=1.54 | 21 | 50 | 0.4200 | 49 | 50 | 0.9800 | controls (CSAB OXA23 negative) | -11.5 | 0.0220853 | 0.003967-0.1229 | 0.0039672 | 0.122948 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_2185 | ACIDLP_01719;AEAJCM_01258;AEPHHL_00172;AGNLLF_01030;AHMIAP_00026;AIGIAA_02216;AMBHCN_02172;AOBNGK_00500;APKFKK_01257;BCAJEO_01416;BDOIEG_00138;CHLMLA_01434;CMDNKJ_00404;CNACEH_00387;COHMLF_00219;DHMCKF_00354;DLCDOA_02447;DLCDOA_02448;DPCGGD_01783;EAFGGO_00179;EDMCBA_01489;EKJIGM_02902;ENEAAA_01261;EOONHM_02596;FEECBJ_01023;FKBKHM_01439;FNOCKN_01350;GGMMDJ_02265;GJMGGM_01383;GLGIIC_02077 | alpha/beta fold hydrolase | |||
| 52 | group_1468 | gene_presence_absence | mnmE | group_1468 | A6739_RS00020 | none confidence | mnmE | Transport permease protein | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 30.07 | 0.89 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.07; coverage=0.89 | 21 | 50 | 0.4200 | 49 | 50 | 0.9800 | controls (CSAB OXA23 negative) | -11.5 | 0.0220853 | 0.003967-0.1229 | 0.0039672 | 0.122948 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2023..3378) | matched_representative_sequence=group_1468 | ACIDLP_01716;AEAJCM_01261;AEPHHL_00169;AGNLLF_01033;AHMIAP_00029;AIGIAA_02213;AMBHCN_02169;AOBNGK_00496;APKFKK_01254;BCAJEO_01413;BDOIEG_00135;CHLMLA_01431;CMDNKJ_00402;CNACEH_00390;COHMLF_00222;DHMCKF_00351;DLCDOA_02451;DPCGGD_01786;EAFGGO_00176;EDMCBA_01486;EKJIGM_02905;ENEAAA_01264;EOONHM_02593;FEECBJ_01020;FKBKHM_01436;FNOCKN_01347;GGMMDJ_02262;GJMGGM_01380;GLGIIC_02080;GLMFPI_03885 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 53 | group_27 | gene_presence_absence | group_27 | group_27 | A6739_RS00085 | none confidence | group_27 | Transport permease protein;hypothetical protein | A6739_RS00085 | putative solute-binding protein | none | 39.74 | 0.94 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.74; coverage=0.94 | 21 | 50 | 0.4200 | 49 | 50 | 0.9800 | controls (CSAB OXA23 negative) | -11.5 | 0.0220853 | 0.003967-0.1229 | 0.0039672 | 0.122948 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 17825..18832 | matched_representative_sequence=group_2739 | ACIDLP_01715;AEAJCM_01262;AEAJCM_01263;AEPHHL_00168;AGNLLF_01034;AHMIAP_00030;AIGIAA_02212;AMBHCN_02168;AOBNGK_00495;APKFKK_01252;APKFKK_01253;BCAJEO_01411;BCAJEO_01412;BDOIEG_00134;CHLMLA_01430;CMDNKJ_00401;CNACEH_00391;COHMLF_00223;DHMCKF_00350;DLCDOA_02452;DPCGGD_01787;EAFGGO_00175;EDMCBA_01485;EKJIGM_02906;ENEAAA_01265;EOONHM_02592;FEECBJ_01019;FKBKHM_01435;FNOCKN_01346;GGMMDJ_02261 | putative solute-binding protein | |||
| 54 | group_6886 | gene_presence_absence | group_6886 | group_6886 | A6739_RS00105 | none confidence | group_6886 | hypothetical protein;Helicase | A6739_RS00105 | anhydro-N-acetylmuramic acid kinase | none | 23.52 | 0.37 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=23.52; coverage=0.37 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(21668..22795) | matched_representative_sequence=group_6886 | ANGLGM_00318;ANNMME_03513;BIMHKD_03702;BKKCFL_02809;BKKCFL_03239;CLAKBE_03076;CLAKBE_03267;DEPLCM_03739;EKEFBI_02799;EMLMMI_02968;FAMOPM_02959;FAMOPM_03037;FDMKAG_03613;GAEFLF_02992;GAEFLF_03221;GEIJOK_03616;IILCLB_03103;JEJHBL_03616;JFJBEF_03481;JGKJBK_01322;JOLCOG_03147;KDMBIP_00025;LPJHGC_03094;MDFJDP_01561;MOFKMO_03497;NLLOAD_03739;NMFHKC_01661;NMOMMB_03065;NMOMMB_03328;OBKBPL_00999 | anhydro-N-acetylmuramic acid kinase | |||
| 55 | group_6822 | gene_presence_absence | group_6822 | group_6822 | A6739_RS00070 | none confidence | group_6822 | Metal-dependent hydrolase | A6739_RS00070 | VTT domain-containing protein | none | 30.81 | 1.38 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=30.81; coverage=1.38 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_6822 | ANGLGM_03309;ANNMME_00336;BIMHKD_01032;BKKCFL_03357;CLAKBE_03552;DEPLCM_01351;EKEFBI_02860;EMLMMI_02908;FAMOPM_03234;FDMKAG_01601;GAEFLF_03467;GEIJOK_01139;IILCLB_02359;JEJHBL_01601;JFJBEF_03353;JGKJBK_00690;JOLCOG_03004;KDMBIP_00085;LPJHGC_01724;MDFJDP_00783;MOFKMO_03371;NLLOAD_01351;NMFHKC_01602;NMOMMB_03540;OBKBPL_00940;OCKDLB_01176;OMJNPG_03599;OOAOIA_01762;PDKMKB_01975;PPMPJI_02954 | VTT domain-containing protein | |||
| 56 | group_5900 | gene_presence_absence | cdiI | group_5900 | A6739_RS00095 | none confidence | cdiI | CdiI immunity protein domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 42.69 | 2.93 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.69; coverage=2.93 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_5900 | ANGLGM_00725;ANNMME_04081;BIMHKD_04123;BKKCFL_03793;CLAKBE_03933;DEPLCM_04115;EKEFBI_02099;EMLMMI_02103;FAMOPM_03640;FDMKAG_03127;GAEFLF_03840;GEIJOK_02162;IILCLB_00052;JEJHBL_02361;JFJBEF_02889;JGKJBK_02541;JOLCOG_02489;KDMBIP_01863;LPJHGC_00928;MDFJDP_02476;MOFKMO_02615;NLLOAD_04116;NMFHKC_02398;NMOMMB_03937;OBKBPL_01889;OCKDLB_02428;OMJNPG_03649;OOAOIA_02103;PDKMKB_01696;PPMPJI_02428 | iron-sulfur cluster insertion protein ErpA | ||
| 57 | group_5839 | gene_presence_absence | group_5839 | group_5839 | A6739_RS00015 | none confidence | group_5839 | DUF4234 domain-containing protein | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 45.54 | 2.81 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=45.54; coverage=2.81 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_5839 | ANGLGM_01649;ANNMME_01832;BIMHKD_00040;BKKCFL_03135;CLAKBE_02992;DEPLCM_00732;EKEFBI_00064;EMLMMI_00064;FAMOPM_01939;FDMKAG_02584;GAEFLF_02850;GEIJOK_02693;IILCLB_03005;JEJHBL_02691;JFJBEF_01321;JGKJBK_00003;JOLCOG_02344;KDMBIP_02683;LPJHGC_02844;MDFJDP_00385;MOFKMO_01572;NLLOAD_00732;NMFHKC_03054;NMOMMB_02971;OBKBPL_02888;OCKDLB_02760;OMJNPG_02639;OOAOIA_02868;PDKMKB_02754;PPMPJI_00064 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 58 | group_5779 | gene_presence_absence | group_5779 | group_5779 | A6739_RS00070 | none confidence | group_5779 | VTT domain-containing protein | A6739_RS00070 | VTT domain-containing protein | none | 34.15 | 3.03 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.15; coverage=3.03 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_5779 | ANGLGM_00726;ANNMME_04082;BIMHKD_04122;BKKCFL_03794;CLAKBE_03934;DEPLCM_04114;EKEFBI_02100;EMLMMI_02104;FAMOPM_03641;FDMKAG_03128;GAEFLF_03841;GEIJOK_02163;IILCLB_00053;JEJHBL_02360;JFJBEF_02890;JGKJBK_02540;JOLCOG_02490;KDMBIP_01862;LPJHGC_00929;MDFJDP_02475;MOFKMO_02616;NLLOAD_04115;NMFHKC_02397;NMOMMB_03938;OBKBPL_01890;OCKDLB_02427;OMJNPG_03650;OOAOIA_02102;PDKMKB_01695;PPMPJI_02427 | VTT domain-containing protein | |||
| 59 | group_5332 | gene_presence_absence | cybC | group_5332 | A6739_RS00065 | none confidence | cybC | cytochrome b562 | A6739_RS00065 | cybC | cytochrome b562 | none | 37.40 | 2.80 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.40; coverage=2.80 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_5332 | ANGLGM_00724;ANNMME_04080;BIMHKD_04124;BKKCFL_03792;CLAKBE_03932;DEPLCM_04116;EKEFBI_02098;EMLMMI_02102;FAMOPM_03639;FDMKAG_03126;GAEFLF_03839;GEIJOK_02161;IILCLB_00051;JEJHBL_02362;JFJBEF_02888;JGKJBK_02542;JOLCOG_02488;KDMBIP_01864;LPJHGC_00927;MDFJDP_02477;MOFKMO_02614;NLLOAD_04117;NMFHKC_02399;NMOMMB_03936;OBKBPL_01888;OCKDLB_02429;OMJNPG_03648;OOAOIA_02104;PDKMKB_01697;PPMPJI_02429 | cytochrome b562 | ||
| 60 | group_5247 | gene_presence_absence | cybC | group_5247 | A6739_RS00065 | none confidence | cybC | SRPBCC family protein | A6739_RS00065 | cybC | cytochrome b562 | none | 45.52 | 1.95 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=45.52; coverage=1.95 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13092..13484 | matched_representative_sequence=group_5247 | ANGLGM_00522;ANNMME_01456;BIMHKD_01822;BKKCFL_01381;CLAKBE_01868;DEPLCM_01935;EKEFBI_02706;EMLMMI_02502;FAMOPM_01642;FDMKAG_01195;GAEFLF_01795;GEIJOK_01545;IILCLB_01114;JEJHBL_01195;JFJBEF_02194;JGKJBK_03282;JOLCOG_01331;KDMBIP_00492;LPJHGC_01318;MDFJDP_03307;MOFKMO_02144;NLLOAD_01935;NMFHKC_01196;NMOMMB_01920;OBKBPL_03784;OCKDLB_01582;OMJNPG_01155;OOAOIA_02516;PDKMKB_02172;PPMPJI_02756 | cytochrome b562 | ||
| 61 | group_5123 | gene_presence_absence | rnpA | group_5123 | A6739_RS00035 | none confidence | rnpA | ribonuclease P protein component | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 38.13 | 2.04 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.13; coverage=2.04 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_5123 | ANGLGM_00315;ANNMME_03516;BIMHKD_03699;BKKCFL_03236;CLAKBE_03270;DEPLCM_03736;EKEFBI_02796;EMLMMI_02971;FAMOPM_03040;FDMKAG_03610;GAEFLF_03224;GEIJOK_03613;IILCLB_03106;JEJHBL_03613;JFJBEF_03484;JGKJBK_01325;JOLCOG_03150;KDMBIP_00022;LPJHGC_03097;MDFJDP_01558;MOFKMO_03494;NLLOAD_03736;NMFHKC_01664;NMOMMB_03325;OBKBPL_01002;OCKDLB_01113;OMJNPG_03521;OOAOIA_01824;PDKMKB_02038;PPMPJI_03017 | ribonuclease P protein component | ||
| 62 | group_5087 | gene_presence_absence | group_5087 | group_5087 | A6739_RS00005 | none confidence | group_5087 | NTF2 fold immunity protein domain-containing protein | A6739_RS00005 | DsbC family protein | none | 39.61 | 2.44 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.61; coverage=2.44 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_5087 | ANGLGM_01647;ANNMME_01834;BIMHKD_00042;BKKCFL_03133;CLAKBE_02994;DEPLCM_00730;EKEFBI_00066;EMLMMI_00066;FAMOPM_01941;FDMKAG_02586;GAEFLF_02848;GEIJOK_02695;IILCLB_03003;JEJHBL_02693;JFJBEF_01323;JGKJBK_00005;JOLCOG_02346;KDMBIP_02685;LPJHGC_02842;MDFJDP_00383;MOFKMO_01570;NLLOAD_00730;NMFHKC_03056;NMOMMB_02973;OBKBPL_02886;OCKDLB_02762;OMJNPG_02637;OOAOIA_02866;PDKMKB_02752;PPMPJI_00066 | DsbC family protein | |||
| 63 | group_5030 | gene_presence_absence | yidD | group_5030 | A6739_RS00030 | none confidence | yidD | membrane protein insertion efficiency factorYidD | A6739_RS00030 | yidD | membrane protein insertion efficiency factorYidD | none | 36.13 | 1.94 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.13; coverage=1.94 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5235..5555) | matched_representative_sequence=group_5030 | ANGLGM_01650;ANNMME_01831;BIMHKD_00039;BKKCFL_03136;CLAKBE_02991;DEPLCM_00733;EKEFBI_00063;EMLMMI_00063;FAMOPM_01938;FDMKAG_02583;GAEFLF_02851;GEIJOK_02692;IILCLB_03006;JEJHBL_02690;JFJBEF_01320;JGKJBK_00002;JOLCOG_02343;KDMBIP_02682;LPJHGC_02845;MDFJDP_00386;MOFKMO_01573;NLLOAD_00733;NMFHKC_03053;NMOMMB_02970;OBKBPL_02889;OCKDLB_02759;OMJNPG_02640;OOAOIA_02869;PDKMKB_02755;PPMPJI_00063 | membrane protein insertion efficiency factorYidD | ||
| 64 | group_4931 | gene_presence_absence | erpA | group_4931 | A6739_RS00095 | none confidence | erpA | Immunity protein 26 | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 35.16 | 1.66 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.16; coverage=1.66 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_4931 | ANGLGM_00511;ANNMME_01467;BIMHKD_01811;BKKCFL_01370;CLAKBE_01879;DEPLCM_01924;EKEFBI_02695;EMLMMI_02513;FAMOPM_01653;FDMKAG_01206;GAEFLF_01784;GEIJOK_01534;IILCLB_01125;JEJHBL_01206;JFJBEF_02205;JGKJBK_02188;JOLCOG_01320;KDMBIP_00481;LPJHGC_01329;MDFJDP_01992;MOFKMO_02133;NLLOAD_01924;NMFHKC_01207;NMOMMB_01931;OBKBPL_00545;OCKDLB_01571;OMJNPG_01144;OOAOIA_02505;PDKMKB_02183;PPMPJI_02745 | iron-sulfur cluster insertion protein ErpA | ||
| 65 | group_4864 | gene_presence_absence | erpA | group_4864 | A6739_RS00095 | none confidence | erpA | Immunity protein 30 domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 34.53 | 2.01 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.53; coverage=2.01 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_4864 | ANGLGM_00510;ANNMME_01468;BIMHKD_01810;BKKCFL_01369;CLAKBE_01880;DEPLCM_01923;EKEFBI_02694;EMLMMI_02514;FAMOPM_01654;FDMKAG_01207;GAEFLF_01783;GEIJOK_01533;IILCLB_01126;JEJHBL_01207;JFJBEF_02206;JGKJBK_02187;JOLCOG_01319;KDMBIP_00480;LPJHGC_01330;MDFJDP_01993;MOFKMO_02132;NLLOAD_01923;NMFHKC_01208;NMOMMB_01932;OBKBPL_00546;OCKDLB_01570;OMJNPG_01143;OOAOIA_02504;PDKMKB_02184;PPMPJI_02744 | iron-sulfur cluster insertion protein ErpA | ||
| 66 | group_4574 | gene_presence_absence | dnaA | group_4574 | A6739_RS00045 | none confidence | dnaA | DUF3592 domain-containing protein | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 36.91 | 1.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.91; coverage=1.54 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_4574 | ANGLGM_01648;ANNMME_01833;BIMHKD_00041;BKKCFL_03134;CLAKBE_02993;DEPLCM_00731;EKEFBI_00065;EMLMMI_00065;FAMOPM_01940;FDMKAG_02585;GAEFLF_02849;GEIJOK_02694;IILCLB_03004;JEJHBL_02692;JFJBEF_01322;JGKJBK_00004;JOLCOG_02345;KDMBIP_02684;LPJHGC_02843;MDFJDP_00384;MOFKMO_01571;NLLOAD_00731;NMFHKC_03055;NMOMMB_02972;OBKBPL_02887;OCKDLB_02761;OMJNPG_02638;OOAOIA_02867;PDKMKB_02753;PPMPJI_00065 | chromosomal replication initiator protein DnaA | ||
| 67 | sbcC | gene_presence_absence | sbcC | sbcC | A6739_RS00090 | none confidence | sbcC | Exonuclease SbcC | A6739_RS00090 | putative solute-binding protein | none | 33.46 | 1.48 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=33.46; coverage=1.48 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 19175..20179 | matched_representative_sequence=sbcC | ANGLGM_03071;ANNMME_02655;BIMHKD_02567;BKKCFL_02274;CLAKBE_02553;DEPLCM_02746;EKEFBI_02023;EMLMMI_01674;FAMOPM_02564;FDMKAG_03051;GAEFLF_02544;GEIJOK_03160;IILCLB_02125;JEJHBL_03039;JFJBEF_03419;JGKJBK_02765;JOLCOG_03071;KDMBIP_02838;LPJHGC_02725;MDFJDP_02764;MOFKMO_03452;NLLOAD_02681;NMFHKC_03003;NMOMMB_02543;OBKBPL_03445;OCKDLB_03108;OMJNPG_03163;OOAOIA_03227;PDKMKB_03057;PPMPJI_01217 | putative solute-binding protein | |||
| 68 | group_4110 | gene_presence_absence | dnaN | group_4110 | A6739_RS00050 | none confidence | dnaN | Acetoacetate decarboxylase | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 31.43 | 1.74 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=31.43; coverage=1.74 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_4110 | ANGLGM_03308;ANNMME_00337;BIMHKD_01033;BKKCFL_03356;CLAKBE_03553;DEPLCM_01350;EKEFBI_02861;EMLMMI_02907;FAMOPM_03233;FDMKAG_01600;GAEFLF_03466;GEIJOK_01140;IILCLB_02358;JEJHBL_01600;JFJBEF_03352;JGKJBK_00689;JOLCOG_03005;KDMBIP_00086;LPJHGC_01723;MDFJDP_00782;MOFKMO_03372;NLLOAD_01350;NMFHKC_01601;NMOMMB_03539;OBKBPL_00939;OCKDLB_01177;OMJNPG_03600;OOAOIA_01761;PDKMKB_01974;PPMPJI_02953 | DNA polymerase III subunit beta | ||
| 69 | group_3963 | gene_presence_absence | fabG | group_3963 | A6739_RS00045 | none confidence | fabG | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 30.73 | 1.38 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.73; coverage=1.38 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_3963 | ANGLGM_00523;ANNMME_01455;BIMHKD_01823;BKKCFL_01382;CLAKBE_01867;DEPLCM_01936;EKEFBI_02707;EMLMMI_02501;FAMOPM_01641;FDMKAG_01194;GAEFLF_01796;GEIJOK_01546;IILCLB_01113;JEJHBL_01194;JFJBEF_02193;JGKJBK_03283;JOLCOG_01332;KDMBIP_00493;LPJHGC_01317;MDFJDP_03308;MOFKMO_02145;NLLOAD_01936;NMFHKC_01195;NMOMMB_01919;OBKBPL_03785;OCKDLB_01583;OMJNPG_01156;OOAOIA_02517;PDKMKB_02171;PPMPJI_02757 | chromosomal replication initiator protein DnaA | ||
| 70 | group_3947 | gene_presence_absence | ydfG | group_3947 | A6739_RS00085 | none confidence | ydfG | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | A6739_RS00085 | putative solute-binding protein | none | 34.11 | 1.37 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.11; coverage=1.37 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 17825..18832 | matched_representative_sequence=group_3947 | ANGLGM_03307;ANNMME_00338;BIMHKD_01034;BKKCFL_03355;CLAKBE_03554;DEPLCM_01349;EKEFBI_02862;EMLMMI_02906;FAMOPM_03232;FDMKAG_01599;GAEFLF_03465;GEIJOK_01141;IILCLB_02357;JEJHBL_01599;JFJBEF_03351;JGKJBK_00688;JOLCOG_03006;KDMBIP_00087;LPJHGC_01722;MDFJDP_00781;MOFKMO_03373;NLLOAD_01349;NMFHKC_01600;NMOMMB_03538;OBKBPL_00938;OCKDLB_01178;OMJNPG_03601;OOAOIA_01760;PDKMKB_01973;PPMPJI_02952 | putative solute-binding protein | |||
| 71 | group_3770 | gene_presence_absence | group_3770 | group_3770 | A6739_RS00005 | none confidence | group_3770 | Endonuclease/exonuclease/phosphatase domain-containing protein | A6739_RS00005 | DsbC family protein | none | 37.61 | 1.01 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.61; coverage=1.01 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_3770 | ANGLGM_00314;ANNMME_03517;BIMHKD_03698;BKKCFL_03235;CLAKBE_03271;DEPLCM_03735;EKEFBI_02795;EMLMMI_02972;FAMOPM_03041;FDMKAG_03609;GAEFLF_03225;GEIJOK_03612;IILCLB_03107;JEJHBL_03612;JFJBEF_03485;JGKJBK_01326;JOLCOG_03151;KDMBIP_00021;LPJHGC_03098;MDFJDP_01557;MOFKMO_03493;NLLOAD_03735;NMFHKC_01665;NMOMMB_03324;OBKBPL_01003;OCKDLB_01112;OMJNPG_03522;OOAOIA_01825;PDKMKB_02039;PPMPJI_03018 | DsbC family protein | |||
| 72 | group_3723 | gene_presence_absence | rnpA | group_3723 | A6739_RS00035 | none confidence | rnpA | HTH lysR-type domain-containing protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 29.48 | 1.11 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.48; coverage=1.11 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_3723 | ANGLGM_00525;ANNMME_01453;BIMHKD_01825;BKKCFL_01384;CLAKBE_01865;DEPLCM_01938;EKEFBI_02709;EMLMMI_02499;FAMOPM_01639;FDMKAG_01192;GAEFLF_01798;GEIJOK_01548;IILCLB_01111;JEJHBL_01192;JFJBEF_02191;JGKJBK_03285;JOLCOG_01334;KDMBIP_00495;LPJHGC_01315;MDFJDP_03310;MOFKMO_02147;NLLOAD_01938;NMFHKC_01193;NMOMMB_01917;OBKBPL_03787;OCKDLB_01585;OMJNPG_01158;OOAOIA_02519;PDKMKB_02169;PPMPJI_02759 | ribonuclease P protein component | ||
| 73 | group_3518 | gene_presence_absence | group_3518 | group_3518 | A6739_RS00070 | none confidence | group_3518 | Polyketide cyclase | A6739_RS00070 | VTT domain-containing protein | none | 40.47 | 1.02 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=40.47; coverage=1.02 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_3518 | ANGLGM_00526;ANNMME_01452;BIMHKD_01826;BKKCFL_01385;CLAKBE_01864;DEPLCM_01939;EKEFBI_02710;EMLMMI_02498;FAMOPM_01638;FDMKAG_01191;GAEFLF_01799;GEIJOK_01549;IILCLB_01110;JEJHBL_01191;JFJBEF_02190;JGKJBK_03286;JOLCOG_01335;KDMBIP_00496;LPJHGC_01314;MDFJDP_03311;MOFKMO_02148;NLLOAD_01939;NMFHKC_01192;NMOMMB_01916;OBKBPL_03788;OCKDLB_01586;OMJNPG_01159;OOAOIA_02520;PDKMKB_02168;PPMPJI_02760 | VTT domain-containing protein | |||
| 74 | group_3450 | gene_presence_absence | dnaN | group_3450 | A6739_RS00050 | none confidence | dnaN | Pyridoxal 4-dehydrogenase | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 37.96 | 1.19 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.96; coverage=1.19 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_3450 | ANGLGM_00524;ANNMME_01454;BIMHKD_01824;BKKCFL_01383;CLAKBE_01866;DEPLCM_01937;EKEFBI_02708;EMLMMI_02500;FAMOPM_01640;FDMKAG_01193;GAEFLF_01797;GEIJOK_01547;IILCLB_01112;JEJHBL_01193;JFJBEF_02192;JGKJBK_03284;JOLCOG_01333;KDMBIP_00494;LPJHGC_01316;MDFJDP_03309;MOFKMO_02146;NLLOAD_01937;NMFHKC_01194;NMOMMB_01918;OBKBPL_03786;OCKDLB_01584;OMJNPG_01157;OOAOIA_02518;PDKMKB_02170;PPMPJI_02758 | DNA polymerase III subunit beta | ||
| 75 | group_3379 | gene_presence_absence | dnaA | group_3379 | A6739_RS00045 | none confidence | dnaA | HTH araC/xylS-type domain-containing protein | A6739_RS00045 | dnaA | chromosomal replication initiator protein DnaA | none | 32.15 | 1.05 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.15; coverage=1.05 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | 6793..8190 | matched_representative_sequence=group_3379 | ANGLGM_03306;ANNMME_00339;BIMHKD_01035;BKKCFL_03354;CLAKBE_03555;DEPLCM_01348;EKEFBI_02863;EMLMMI_02905;FAMOPM_03231;FDMKAG_01598;GAEFLF_03464;GEIJOK_01142;IILCLB_02356;JEJHBL_01598;JFJBEF_03350;JGKJBK_00687;JOLCOG_03007;KDMBIP_00088;LPJHGC_01721;MDFJDP_00780;MOFKMO_03374;NLLOAD_01348;NMFHKC_01599;NMOMMB_03537;OBKBPL_00937;OCKDLB_01179;OMJNPG_03602;OOAOIA_01759;PDKMKB_01972;PPMPJI_02951 | chromosomal replication initiator protein DnaA | ||
| 76 | group_631 | gene_presence_absence | rpmH | group_631 | A6739_RS00040 | none confidence | rpmH | 50S ribosomal protein L34 | A6739_RS00040 | rpmH | 50S ribosomal protein L34 | none | 50.45 | 3.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=50.45; coverage=3.54 | 29 | 50 | 0.5800 | 1 | 50 | 0.0200 | cases (CRAB OXA23 positive) | 11.5 | 45.2791 | 8.134-252.1 | 8.13352 | 252.067 | 3.83e-05 | 12.9176 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5988..6122) | matched_representative_sequence=group_6311 | ANGLGM_00722;ANNMME_04078;BIMHKD_04126;BKKCFL_02176;CLAKBE_02489;DEPLCM_04118;EKEFBI_02096;EMLMMI_02100;FAMOPM_02407;FDMKAG_03124;GAEFLF_02442;GEIJOK_02159;IILCLB_00049;JEJHBL_02364;JFJBEF_02886;JGKJBK_02544;JOLCOG_02486;KDMBIP_01866;LPJHGC_00925;MDFJDP_02479;MOFKMO_02612;NLLOAD_04119;NMFHKC_02401;NMOMMB_00967;OBKBPL_01886;OCKDLB_02431;OMJNPG_03646;OOAOIA_02106;PDKMKB_01699;PPMPJI_02431 | 50S ribosomal protein L34 | ||
| 77 | group_1533 | gene_presence_absence | dnaN | group_1533 | A6739_RS00050 | none confidence | dnaN | Broad specificity amino-acid racemase | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 30.63 | 0.85 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.63; coverage=0.85 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.47 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 2.68e-05 | 12.8982 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_1533 | AEPHHL_00477;AGNLLF_00726;AOBNGK_02639;EAFGGO_00503;EOONHM_02183;GLGIIC_00840;GMMHOP_00635;JBKHKM_02260;LNGIEH_00793;MOFLDA_01567;NGKKDC_00082;OBMFOM_02288;OLJICN_02570;OMJIED_03670 | DNA polymerase III subunit beta | ||
| 78 | group_1879 | gene_presence_absence | dnaN | group_1879 | A6739_RS00050 | none confidence | dnaN | Lipoprotein | A6739_RS00050 | dnaN | DNA polymerase III subunit beta | none | 38.81 | 1.06 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.81; coverage=1.06 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.38 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 3.97e-05 | 12.8639 | Panaroo/Bakta+GenBank | nucleotide_similarity | 8288..9436 | matched_representative_sequence=group_1879 | AEPHHL_03503;AGNLLF_03416;BDOIEG_02298;CMDNKJ_03743;DLCDOA_03511;EOONHM_00526;GLGIIC_03474;GMMHOP_01266;JBKHKM_02003;KNPJLO_01006;LNGIEH_03284;MOFLDA_02720;NGKKDC_03494;OBMFOM_02031;OLJICN_03370 | DNA polymerase III subunit beta | ||
| 79 | group_2662 | gene_presence_absence | group_2662 | group_2662 | A6739_RS00105 | none confidence | group_2662 | Lysozyme | A6739_RS00105 | anhydro-N-acetylmuramic acid kinase | none | 36.45 | 1.97 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=36.45; coverage=1.97 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.99 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 4.35e-05 | 12.8242 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(21668..22795) | matched_representative_sequence=group_2662 | AEAJCM_03646;AEPHHL_01044;APKFKK_03567;BCAJEO_03632;EAFGGO_00644;GPCEGG_03547;HIOOEO_03560;KAIBOE_03875;NGKKDC_00594;NKDDBA_03557;OIJAEJ_03497;OLJICN_00037;OMAPCN_03587;PAJDEF_03558;PDBBOI_03534 | anhydro-N-acetylmuramic acid kinase | |||
| 80 | group_2500 | gene_presence_absence | rnpA | group_2500 | A6739_RS00035 | none confidence | rnpA | Holin | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 43.86 | 3.09 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=43.86; coverage=3.09 | 0 | 50 | 0.0000 | 15 | 50 | 0.3000 | controls (CSAB OXA23 negative) | -4.99 | 0.0226765 | 0.001313-0.3915 | 0.00131336 | 0.391533 | 4.35e-05 | 12.8242 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_2500 | AEAJCM_01184;AEPHHL_01043;APKFKK_03711;BCAJEO_01490;EAFGGO_00645;GPCEGG_01287;HIOOEO_03706;KAIBOE_03876;NGKKDC_00595;NKDDBA_03696;OIJAEJ_03686;OLJICN_00038;OMAPCN_01302;PAJDEF_03703;PDBBOI_03703 | ribonuclease P protein component | ||
| 81 | group_899 | gene_presence_absence | yidD | group_899 | A6739_RS00030 | none confidence | yidD | membrane protein insertion efficiency factorYidD | A6739_RS00030 | yidD | membrane protein insertion efficiency factorYidD | none | 43.41 | 1.77 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=43.41; coverage=1.77 | 0 | 50 | 0.0000 | 7 | 50 | 0.1400 | controls (CSAB OXA23 negative) | -5.32 | 0.0574257 | 0.003187-1.035 | 0.00318726 | 1.03466 | 2.21e-06 | 12.7778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5235..5555) | matched_representative_sequence=group_899 | AEPHHL_02069;AGNLLF_02683;DLCDOA_02797;KAIBOE_03974;NGKKDC_02374;NJCICH_03029;OLJICN_02124 | membrane protein insertion efficiency factorYidD | ||
| 82 | group_1318 | gene_presence_absence | rnpA | group_1318 | A6739_RS00035 | none confidence | rnpA | CXXC-20-CXXC protein;hypothetical protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 40.99 | 2.38 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.99; coverage=2.38 | 49 | 50 | 0.9800 | 12 | 50 | 0.2400 | cases (CRAB OXA23 positive) | 4.55 | 101.64 | 17.75-582.1 | 17.7471 | 582.107 | 0.000789 | 12.7702 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_1318 | AHMIAP_01933;AIGIAA_01635;ANGLGM_03712;ANNMME_02346;BIMHKD_02912;BKKCFL_03424;CHLMLA_01656;CLAKBE_03644;CNACEH_03753;COHMLF_03206;DEPLCM_02975;DHMCKF_02810;DLCDOA_03168;EDMCBA_01957;EKEFBI_00651;EKJIGM_01736;EMLMMI_00651;ENEAAA_01921;FAMOPM_03322;FDMKAG_00544;FEECBJ_01470;FKBKHM_03029;FNOCKN_01851;GAEFLF_03550;GEIJOK_00539;GGMMDJ_02753;GJMGGM_01791;GMFAHH_01749;HENMEN_01626;HKLMOD_01987 | ribonuclease P protein component | ||
| 83 | group_1051 | gene_presence_absence | group_1051 | group_1051 | A6739_RS00015 | none confidence | group_1051 | metal/formaldehyde-sensitive transcriptionalrepressor | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 42.25 | 4.37 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=42.25; coverage=4.37 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.38 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 3.97e-05 | 12.7276 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_1051 | AEPHHL_03502;AGNLLF_03417;BDOIEG_02299;DLCDOA_03510;EOONHM_00525;GLGIIC_03475;GMMHOP_01265;JBKHKM_02004;KNPJLO_01005;LNGIEH_03285;MOFLDA_02721;NGKKDC_03493;OBMFOM_02032;OLJICN_03371 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 84 | group_7298 | gene_presence_absence | group_7298 | group_7298 | A6739_RS00005 | none confidence | group_7298 | SMI1/KNR4 family protein | A6739_RS00005 | DsbC family protein | none | 34.09 | 2.10 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.09; coverage=2.10 | 0 | 50 | 0.0000 | 7 | 50 | 0.1400 | controls (CSAB OXA23 negative) | -5.35 | 0.0574257 | 0.003187-1.035 | 0.00318726 | 1.03466 | 2.49e-06 | 12.7260 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_7298 | AEPHHL_02067;AGNLLF_02681;DLCDOA_02799;KAIBOE_03976;NANECH_03174;NGKKDC_02376;OLJICN_02122 | DsbC family protein | |||
| 85 | group_2934 | gene_presence_absence | erpA | group_2934 | A6739_RS00095 | none confidence | erpA | Histidine phosphatase family protein;hypothetical protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 32.24 | 1.72 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.24; coverage=1.72 | 0 | 50 | 0.0000 | 8 | 50 | 0.1600 | controls (CSAB OXA23 negative) | -5.33 | 0.049505 | 0.002775-0.883 | 0.00277547 | 0.883 | 4.27e-06 | 12.7059 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_2934 | AEPHHL_00496;AGNLLF_00707;CMDNKJ_01237;GLGIIC_00862;KAIBOE_03970;LAEAMC_01447;LAEAMC_01448;NGKKDC_00063;OLJICN_02589 | iron-sulfur cluster insertion protein ErpA | ||
| 86 | group_6496 | gene_presence_absence | group_6496 | group_6496 | A6739_RS00015 | none confidence | group_6496 | 3-methyladenine DNA glycosylase | A6739_RS00015 | metal/formaldehyde-sensitive transcriptionalrepressor | none | 43.31 | 7.48 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=43.31; coverage=7.48 | 28 | 50 | 0.5600 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 9.83 | 127.933 | 7.476-2189 | 7.47564 | 2189.37 | 0.00198 | 12.7026 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1713..1976 | matched_representative_sequence=group_6496 | ANNMME_01533;BIMHKD_02096;BKKCFL_01607;CLAKBE_01927;DEPLCM_02209;EKEFBI_01168;EMLMMI_00735;FDMKAG_00460;GAEFLF_01930;GEIJOK_00623;IILCLB_02218;JEJHBL_00623;JFJBEF_02543;JGKJBK_01634;JOLCOG_00059;KDMBIP_01002;LPJHGC_01921;MDFJDP_01740;MOFKMO_00059;NLLOAD_02130;NMFHKC_00461;NMOMMB_01979;OBKBPL_00433;OCKDLB_00623;OMJNPG_02122;OOAOIA_00461;PDKMKB_00461;PPMPJI_01168 | metal/formaldehyde-sensitive transcriptionalrepressor | |||
| 87 | group_4996 | gene_presence_absence | group_4996 | group_4996 | A6739_RS00100 | none confidence | group_4996 | alpha/beta fold hydrolase | A6739_RS00100 | alpha/beta fold hydrolase | none | 30.37 | 2.55 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=30.37; coverage=2.55 | 28 | 50 | 0.5600 | 0 | 50 | 0.0000 | cases (CRAB OXA23 positive) | 9.83 | 127.933 | 7.476-2189 | 7.47564 | 2189.37 | 0.00198 | 12.7026 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(20695..21540) | matched_representative_sequence=group_4996 | ANNMME_01534;BIMHKD_02095;BKKCFL_01608;CLAKBE_01926;DEPLCM_02208;EKEFBI_01167;EMLMMI_00736;FDMKAG_00459;GAEFLF_01929;GEIJOK_00624;IILCLB_02217;JEJHBL_00624;JFJBEF_02542;JGKJBK_01633;JOLCOG_00060;KDMBIP_01003;LPJHGC_01920;MDFJDP_01739;MOFKMO_00060;NLLOAD_02131;NMFHKC_00460;NMOMMB_01978;OBKBPL_00432;OCKDLB_00624;OMJNPG_02123;OOAOIA_00460;PDKMKB_00460;PPMPJI_01167 | alpha/beta fold hydrolase | |||
| 88 | group_4961 | gene_presence_absence | group_4961 | group_4961 | A6739_RS00070 | none confidence | group_4961 | VTT domain-containing protein | A6739_RS00070 | VTT domain-containing protein | none | 34.49 | 2.08 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.49; coverage=2.08 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.99 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 4.34e-05 | 12.6889 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_4961 | AEAJCM_02191;AEPHHL_00986;APKFKK_02275;BCAJEO_02319;GPCEGG_02121;HIOOEO_02180;KAIBOE_03840;NGKKDC_00653;NKDDBA_02179;OIJAEJ_02150;OLJICN_00095;OMAPCN_02166;PAJDEF_02180;PDBBOI_02202 | VTT domain-containing protein | |||
| 89 | group_4195 | gene_presence_absence | group_4195 | group_4195 | A6739_RS00005 | none confidence | group_4195 | DUF1828 domain-containing protein | A6739_RS00005 | DsbC family protein | none | 41.28 | 1.38 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=41.28; coverage=1.38 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.99 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 4.34e-05 | 12.6889 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_4195 | AEAJCM_02190;AEPHHL_00985;APKFKK_02274;BCAJEO_02318;GPCEGG_02120;HIOOEO_02179;KAIBOE_03841;NGKKDC_00654;NKDDBA_02178;OIJAEJ_02149;OLJICN_00096;OMAPCN_02165;PAJDEF_02179;PDBBOI_02203 | DsbC family protein | |||
| 90 | group_534 | gene_presence_absence | rnpA | group_534 | A6739_RS00035 | none confidence | rnpA | Rha family phage regulatory protein | A6739_RS00035 | rnpA | ribonuclease P protein component | none | 41.63 | 3.08 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=41.63; coverage=3.08 | 0 | 50 | 0.0000 | 14 | 50 | 0.2800 | controls (CSAB OXA23 negative) | -4.99 | 0.0249232 | 0.00144-0.4314 | 0.00143991 | 0.431393 | 4.34e-05 | 12.6889 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5566..5958) | matched_representative_sequence=group_5340 | AEAJCM_02227;AEPHHL_01025;APKFKK_02311;BCAJEO_02355;GPCEGG_02157;HIOOEO_02216;KAIBOE_03670;NGKKDC_00613;NKDDBA_02215;OIJAEJ_02186;OLJICN_00056;OMAPCN_02202;PAJDEF_02216;PDBBOI_02166 | ribonuclease P protein component | ||
| 91 | group_5837 | gene_presence_absence | erpA | group_5837 | A6739_RS00095 | none confidence | erpA | DUF1330 domain-containing protein | A6739_RS00095 | erpA | iron-sulfur cluster insertion protein ErpA | none | 42.19 | 3.16 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.19; coverage=3.16 | 49 | 50 | 0.9800 | 23 | 50 | 0.4600 | cases (CRAB OXA23 positive) | 3.8 | 38.617 | 6.948-214.6 | 6.94841 | 214.621 | 3.98e-05 | 12.6713 | Panaroo/Bakta+GenBank | nucleotide_similarity | 20304..20639 | matched_representative_sequence=group_5837 | ACIDLP_01022;AHMIAP_01617;AIGIAA_02142;AMBHCN_01770;ANGLGM_02087;ANNMME_01544;BDOIEG_00467;BIMHKD_02085;BKKCFL_01618;CHLMLA_00520;CLAKBE_01916;COHMLF_02801;DEPLCM_02198;DHMCKF_01887;DLCDOA_03159;DPCGGD_01475;EAFGGO_00518;EDMCBA_00519;EKEFBI_01158;EKJIGM_01433;EMLMMI_00745;ENEAAA_01376;FDMKAG_00450;FEECBJ_01365;FKBKHM_01726;FNOCKN_00879;GAEFLF_01919;GEIJOK_00633;GGMMDJ_01901;GJMGGM_01083 | iron-sulfur cluster insertion protein ErpA | ||
| 92 | group_1478 | gene_presence_absence | group_1478 | group_1478 | A6739_RS00005 | none confidence | group_1478 | N-acetyltransferase domain-containing protein | A6739_RS00005 | DsbC family protein | none | 45.86 | 1.64 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=45.86; coverage=1.64 | 0 | 50 | 0.0000 | 11 | 50 | 0.2200 | controls (CSAB OXA23 negative) | -4.58 | 0.0340077 | 0.001944-0.595 | 0.00194385 | 0.594968 | 1.62e-05 | 12.6685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_1478 | AEPHHL_00703;AGNLLF_00145;CMDNKJ_00649;CNACEH_01764;DLCDOA_00641;FEECBJ_00689;JMGEHL_01849;NADHLL_02036;NGKKDC_00936;OLJICN_00378;OMJIED_01613 | DsbC family protein | |||
| 93 | group_6829 | gene_presence_absence | recF | group_6829 | A6739_RS00055 | none confidence | recF | hypothetical protein;Oxidoreductase | A6739_RS00055 | recF | DNA replication/repair protein RecF | none | 30.93 | 0.80 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.93; coverage=0.80 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9451..10533 | matched_representative_sequence=group_6829 | ACIDLP_01589;AHMIAP_00144;AIGIAA_02998;AMBHCN_02053;ANGLGM_00296;ANNMME_03924;BDOIEG_00019;BIMHKD_00732;BKKCFL_03217;CHLMLA_02845;CLAKBE_03289;COHMLF_00337;DEPLCM_00778;DHMCKF_00236;DPCGGD_01902;EDMCBA_02940;EKEFBI_02777;EKJIGM_03336;EMLMMI_02990;ENEAAA_02991;EOONHM_00479;FAMOPM_03059;FDMKAG_03591;FKBKHM_03103;FNOCKN_03143;GAEFLF_03243;GEIJOK_03594;GGMMDJ_03063;GJMGGM_03197;GMFAHH_02975 | DNA replication/repair protein RecF | ||
| 94 | group_1966 | gene_presence_absence | group_1966 | group_1966 | A6739_RS00005 | none confidence | group_1966 | AB hydrolase-1 domain-containing protein | A6739_RS00005 | DsbC family protein | none | 38.80 | 1.20 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.80; coverage=1.20 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(<1..585) | matched_representative_sequence=group_1966 | ACIDLP_01584;AHMIAP_00149;AIGIAA_02993;AMBHCN_02048;ANGLGM_00299;ANNMME_03927;BDOIEG_00016;BIMHKD_00735;BKKCFL_03220;CHLMLA_02850;CLAKBE_03286;COHMLF_00342;DEPLCM_00775;DHMCKF_00231;DPCGGD_01907;EDMCBA_02935;EKEFBI_02780;EKJIGM_03331;EMLMMI_02987;ENEAAA_02986;EOONHM_00483;FAMOPM_03056;FDMKAG_03594;FKBKHM_03108;FNOCKN_03148;GAEFLF_03240;GEIJOK_03597;GGMMDJ_03068;GJMGGM_03192;GMFAHH_02970 | DsbC family protein | |||
| 95 | group_926 | gene_presence_absence | dmeF | group_926 | A6739_RS00010 | none confidence | dmeF | hypothetical protein;DUF4386 domain-containing protein | A6739_RS00010 | dmeF | CDF family Co(II)/Ni(II) efflux transporterDmeF | none | 35.08 | 1.45 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.08; coverage=1.45 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(681..1655) | matched_representative_sequence=group_926 | ACIDLP_01590;AHMIAP_00143;AIGIAA_02999;AMBHCN_02054;ANGLGM_00295;ANNMME_03923;BDOIEG_00020;BIMHKD_00731;BKKCFL_03216;CHLMLA_02844;CLAKBE_03290;COHMLF_00336;DEPLCM_00779;DHMCKF_00237;DPCGGD_01901;EDMCBA_02941;EKEFBI_02776;EKJIGM_03337;EMLMMI_02991;ENEAAA_02992;EOONHM_00478;FAMOPM_03060;FDMKAG_03590;FKBKHM_03102;FNOCKN_03142;GAEFLF_03244;GEIJOK_03593;GGMMDJ_03062;GJMGGM_03198;GMFAHH_02976 | CDF family Co(II)/Ni(II) efflux transporterDmeF | ||
| 96 | group_850 | gene_presence_absence | yidC | group_850 | A6739_RS00025 | none confidence | yidC | Transporter;hypothetical protein | A6739_RS00025 | yidC | membrane protein insertase YidC | none | 32.31 | 0.87 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.31; coverage=0.87 | 49 | 50 | 0.9800 | 18 | 50 | 0.3600 | cases (CRAB OXA23 positive) | 3.06 | 57.973 | 10.36-324.3 | 10.3625 | 324.329 | 0.000178 | 12.6069 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3469..5229) | matched_representative_sequence=group_850 | ACIDLP_01591;AHMIAP_00142;AIGIAA_03000;AMBHCN_02055;ANGLGM_00294;ANNMME_03922;BDOIEG_00021;BIMHKD_00730;BKKCFL_03215;CHLMLA_02843;CLAKBE_03291;COHMLF_00335;DEPLCM_00780;DHMCKF_00238;DPCGGD_01900;EDMCBA_02942;EKEFBI_02775;EKJIGM_03338;EMLMMI_02992;ENEAAA_02993;EOONHM_00477;FAMOPM_03061;FDMKAG_03589;FKBKHM_03101;FNOCKN_03141;GAEFLF_03245;GEIJOK_03592;GGMMDJ_03061;GJMGGM_03199;GMFAHH_02977 | membrane protein insertase YidC | ||
| 97 | group_1711 | gene_presence_absence | group_1711 | group_1711 | A6739_RS00070 | none confidence | group_1711 | ATP-binding protein | A6739_RS00070 | VTT domain-containing protein | none | 31.02 | 1.04 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.02; coverage=1.04 | 49 | 50 | 0.9800 | 23 | 50 | 0.4600 | cases (CRAB OXA23 positive) | 3.21 | 38.617 | 6.948-214.6 | 6.94841 | 214.621 | 5.02e-05 | 12.5705 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(13570..14127) | matched_representative_sequence=group_1711 | AEAJCM_03097;AHMIAP_03445;AIGIAA_02537;ANGLGM_02920;ANNMME_03166;AOBNGK_02367;APKFKK_03095;BCAJEO_03172;BIMHKD_02306;BKKCFL_02290;CHLMLA_02274;CLAKBE_02724;CMDNKJ_02051;COHMLF_01832;DEPLCM_02420;DHMCKF_03075;EDMCBA_03092;EKEFBI_01649;EMLMMI_02048;ENEAAA_03319;FAMOPM_02465;FDMKAG_02321;FKBKHM_01869;FNOCKN_02589;GAEFLF_02445;GEIJOK_02626;GGMMDJ_03144;GJMGGM_02575;GLGIIC_02668;GLMFPI_03226 | VTT domain-containing protein | |||
| 98 | group_7248 | gene_presence_absence | tyrS | group_7248 | A6739_RS00110 | none confidence | tyrS | Porin domain-containing protein | A6739_RS00110 | tyrS | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | none | 29.38 | 1.20 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.38; coverage=1.20 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.8 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 4.05e-05 | 12.5501 | Panaroo/Bakta+GenBank | nucleotide_similarity | 22857..24089 | matched_representative_sequence=group_7248 | ACIDLP_01014;AHMIAP_01625;AIGIAA_02150;AMBHCN_01778;ANGLGM_02079;ANNMME_01552;AOBNGK_02632;BDOIEG_00459;BIMHKD_02077;BKKCFL_01626;CHLMLA_00512;CLAKBE_01908;COHMLF_02809;DEPLCM_02190;DHMCKF_01895;DLCDOA_03151;DPCGGD_01483;EAFGGO_00510;EDMCBA_00511;EKEFBI_01150;EKJIGM_01425;EMLMMI_00753;ENEAAA_01384;FDMKAG_00442;FEECBJ_01357;FKBKHM_01718;FNOCKN_00887;GAEFLF_01911;GEIJOK_00641;GGMMDJ_01909 | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | ||
| 99 | group_6849 | gene_presence_absence | mnmE | group_6849 | A6739_RS00020 | none confidence | mnmE | hypothetical protein;(E)-2-((N-methylformamido)methylene)succinate hydrolase | A6739_RS00020 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 35.10 | 1.39 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.10; coverage=1.39 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.8 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 4.05e-05 | 12.5501 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2023..3378) | matched_representative_sequence=group_6849 | ACIDLP_01019;AHMIAP_01620;AIGIAA_02145;AMBHCN_01773;ANGLGM_02084;ANNMME_01547;AOBNGK_02627;BDOIEG_00464;BIMHKD_02082;BKKCFL_01621;CHLMLA_00517;CLAKBE_01913;COHMLF_02804;DEPLCM_02195;DHMCKF_01890;DLCDOA_03156;DPCGGD_01478;EAFGGO_00515;EDMCBA_00516;EKEFBI_01155;EKJIGM_01430;EMLMMI_00748;ENEAAA_01379;FDMKAG_00447;FEECBJ_01362;FKBKHM_01723;FNOCKN_00882;GAEFLF_01916;GEIJOK_00636;GGMMDJ_01904 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 100 | group_4941 | gene_presence_absence | tyrS | group_4941 | A6739_RS00110 | none confidence | tyrS | NCS1 nucleoside transporter | A6739_RS00110 | tyrS | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) | none | 31.97 | 0.85 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=31.97; coverage=0.85 | 49 | 50 | 0.9800 | 24 | 50 | 0.4800 | cases (CRAB OXA23 positive) | 3.8 | 35.6939 | 6.425-198.3 | 6.42507 | 198.294 | 4.05e-05 | 12.5501 | Panaroo/Bakta+GenBank | nucleotide_similarity | 22857..24089 | matched_representative_sequence=group_4941 | ACIDLP_01015;AHMIAP_01624;AIGIAA_02149;AMBHCN_01777;ANGLGM_02080;ANNMME_01551;AOBNGK_02631;BDOIEG_00460;BIMHKD_02078;BKKCFL_01625;CHLMLA_00513;CLAKBE_01909;COHMLF_02808;DEPLCM_02191;DHMCKF_01894;DLCDOA_03152;DPCGGD_01482;EAFGGO_00511;EDMCBA_00512;EKEFBI_01151;EKJIGM_01426;EMLMMI_00752;ENEAAA_01383;FDMKAG_00443;FEECBJ_01358;FKBKHM_01719;FNOCKN_00886;GAEFLF_01912;GEIJOK_00640;GGMMDJ_01908 | tyrosine--tRNA ligaseCONTIG join(CZWC01000001.1:1..24345) |
Showing 100 of 1478 rows.
| Confidence | Rule | Interpretation |
|---|---|---|
| high | >=95% identity and >=90% coverage, or exact qualifier-level support | Strong reference-supported annotation |
| medium | >=85% identity and >=70% coverage | Plausible annotation; inspect manually |
| low | >=60% identity and >=50% coverage, or weak/partial support | Tentative annotation only |
| none | No usable GenBank match | Keep the pangenome/SNP marker identifier |
metric value reference_cds_parsed 22 reference_parse_warning panaroo_clusters_parsed 9214 annotation_engine Panaroo/Bakta fasta_records_parsed 388377 top_priority_input Abaumannii_CRAB_OXA23pos_vs_CSAB_OXA23neg_50v50_top_priority_hits.tsv all_significant_input Abaumannii_CRAB_OXA23pos_vs_CSAB_OXA23neg_50v50_all_significant_hits.tsv method GenBank qualifier matching plus pure-Python nucleotide similarity rescue when Panaroo representative sequences are available
rMAP-GWAS sample-set input validation report ================================================ Cases (CRAB OXA23 positive): 50 Controls (CSAB OXA23 negative): 50 Total samples: 100 Case (CRAB OXA23 positive) label: case (CRAB OXA23 positive) Control (CSAB OXA23 negative) label: control (CSAB OXA23 negative) Phenotype display metadata values provided: yes Unique phenotype display values: CRAB_OXA23_positive, CSAB_OXA23_negative Status: PASS
Panaroo output files: panaroo_out/combined_DNA_CDS.fasta panaroo_out/combined_protein_CDS.fasta panaroo_out/combined_protein_cdhit_out.txt panaroo_out/combined_protein_cdhit_out.txt.clstr panaroo_out/final_graph.gml panaroo_out/gene_data.csv panaroo_out/gene_presence_absence.Rtab panaroo_out/gene_presence_absence.csv panaroo_out/gene_presence_absence_roary.csv panaroo_out/pan_genome_reference.fa panaroo_out/pre_filt_graph.gml panaroo_out/struct_presence_absence.Rtab panaroo_out/summary_statistics.txt
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