Reproducible microbial GWAS from paired-end reads for one explicitly coded binary phenotype per run, including gene presence/absence GWAS, optional SNP marker GWAS, population-structure visualization, post-GWAS reference annotation, and ranked association reporting.
blaKPC_vs_no_blaKPC. Configured contrast: case (blaKPC positive) versus control (blaKPC negative). The report displays the metadata-derived biological contrast throughout the HTML: case (blaKPC positive) = 1 and control (blaKPC negative) = 0.| Class | Pyseer coding | Metadata column | Metadata value used for display | Samples | Report label |
|---|---|---|---|---|---|
| case | 1 | blaKPC_vs_no_blaKPC | blaKPC positive | 50 | case (blaKPC positive) |
| control | 0 | blaKPC_vs_no_blaKPC | blaKPC negative | 50 | control (blaKPC negative) |
| Interpretation issue | Current workflow/report behavior | Recommended AMR interpretation |
|---|---|---|
| Phenotype clarity | One binary phenotype is tested per run using the phenotype TSV supplied to pyseer. | For AMR, label the contrast explicitly as phenotypically resistant versus susceptible and verify case/control coding before launch. |
| Gene presence/absence | The primary GWAS branch tests pangenome gene-cluster presence/absence with population-structure correction. | A resistance gene found in some susceptible isolates may reflect gene inactivity, expression differences, breakpoint issues, linkage, or phenotype error; interpret enrichment rather than presence alone. |
| Point mutations | Point mutations are not represented by gene presence/absence; they are assessed only when the optional SNP GWAS branch is enabled. | Use do_snp_gwas=true for mutation-mediated resistance, such as many MTBC drug-resistance phenotypes, and interpret SNP hits alongside known resistance catalogs where available. |
| Species background | Species labels are recorded as run provenance, but species is not automatically included as a regression covariate in the default model. | Avoid pooling divergent species without review. Prefer species-specific or lineage-aware analyses when associations may differ by species. |
| Sequencing depth and assembly quality | The workflow generates FASTQ/assembly QC outputs, but read depth and assembly quality are not automatically modeled as covariates. | Filter low-depth or poor-quality samples and inspect gene absence in susceptible/resistant groups before making biological claims. |
| Multiple resistance genes in the same class | Prioritized hits are marker-level associations and may be correlated through plasmids, mobile elements, clonal background, or co-carriage. | For antibiotic-class interpretation, inspect gene co-occurrence and consider class-level summaries or follow-up multivariable models outside this summary report. |
| Population structure and linkage | Mash distances/MDS and population-structure plots are generated to help assess lineage confounding. | If resistant and susceptible isolates cluster by lineage or outbreak, treat hits as candidates requiring validation rather than causal resistance determinants. |
Checks sample names, paired FASTQs, group labels, and case (blaKPC positive)/control (blaKPC negative) balance.
Generates cleaned reads plus QC summaries.
Builds de novo genome assemblies using safe Cromwell memory handling.
Creates GFF annotations and pangenome gene matrices. Prokka remains the default; Bakta can be enabled with use_bakta=true.
Runs population-structure-aware gene and optional SNP association testing.
Maps prioritized pangenome/SNP markers to reference GenBank features where possible.
metric value phenotype blaKPC_vs_no_blaKPC case_label case (blaKPC positive) (blaKPC positive) control_label control (blaKPC negative) (blaKPC negative) samples 100 pcoa1_variance_percent 35.2313 pcoa2_variance_percent 19.0970 pcoa1_plus_pcoa2_variance_percent 54.3283 case_within_mean_mash_distance 0.00673743763632653 control_within_mean_mash_distance 0.01415910113567347 between_group_mean_mash_distance 0.0127023253792 between_within_mash_distance_ratio 1.2157 pcoa_centroid_separation_score 0.5831 method PCoA from square Mash distance matrix plus distance heatmap layman_pcoa_interpretation The PCoA plot shows moderate separation between the two phenotype groups (PCoA separation score 0.58; between/within Mash distance ratio 1.22). Some GWAS signals may still be influenced by lineage, so prioritize hits that remain biologically plausible and are not explained only by clustering.
metric value pvalues_detected 7848 points_drawn 5000 plot_label Gene presence/absence GWAS significant_points_at_alpha 2339 top_feature blaKPC67~~~blaKPC2 top_pvalue 2.27e-17 top_minus_log10_pvalue 16.6440 qq_median_delta_observed_minus_expected 0.1378 qq_tail_delta_observed_minus_expected 12.4482 manhattan_type feature_index_not_genomic_coordinate qq_plot generated layman_manhattan_interpretation Each dot is a gene or gene cluster. Taller dots mean stronger evidence of difference between the two groups. In this run, 2339 of 7848 tested gene features crossed the alpha=0.05 line. The tallest signal was blaKPC67~~~blaKPC2 (p=2.27e-17). Multiple significant dots may represent linked genes, mobile elements, or lineage effects, so review the priority table and population structure before interpreting them as independent causal markers. layman_qq_interpretation Most QQ-plot points are close to the expected background, but the upper tail rises above expectation. That pattern is consistent with a small number of candidate gene associations rather than general inflation. The candidate signals should still be checked against population structure and annotation confidence.
metric value plot_label SNP marker GWAS pvalues_detected 212956 significant_points_at_alpha 18622 top_marker NC_009648.1_1527272_G_A top_position 1527272 top_pvalue 2.52e-15 top_minus_log10_pvalue 14.5986 qq_median_delta_observed_minus_expected -0.3010 qq_tail_delta_observed_minus_expected 8.9693 points_drawn 5000 manhattan_type reference_coordinate_when_available qq_plot generated layman_manhattan_interpretation Each dot is a SNP marker placed by reference coordinate when available. 18622 of 212956 tested SNP markers crossed the alpha=0.05 line. The strongest marker was NC_009648.1_1527272_G_A at position 1527272 (p=2.52e-15). Clusters of SNP hits can reflect true mutation signal, lineage background, or linked variants, so review the top-hit table and PCoA/kinship plots before interpretation. layman_qq_interpretation The SNP QQ plot has a raised upper tail with less broad inflation across the rest of the plot. This pattern is compatible with a limited number of candidate SNP associations, but they still need biological validation and lineage checks.
aminotransferase class I/II-fold pyridoxalphosphate-dependent enzyme
MFS transporter
CusA/CzcA family heavy metal efflux RNDtransporter
aspartate carbamoyltransferase
phenylacetic acid degradation bifunctionalprotein PaaZ
| rank | feature id | variant id | feature type | contig | position | ref | alt | gene name | product | reference locus tag | reference gene | reference product | case (blaKPC positive) alt | case (blaKPC positive) total | case (blaKPC positive) frequency | control (blaKPC negative) alt | control (blaKPC negative) total | control (blaKPC negative) frequency | enriched in | beta | odds ratio | odds ratio ci95 | odds ratio ci95 lower | odds ratio ci95 upper | pyseer pvalue | q value | priority score | annotation source | reference location | qual | notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_009648.1_1527272_G_A | NC_009648.1_1527272_G_A | snp | NC_009648.1 | 1527272 | G | A | KPN_RS07295 | aminotransferase class I/II-fold pyridoxalphosphate-dependent enzyme | KPN_RS07295 | aminotransferase class I/II-fold pyridoxalphosphate-dependent enzyme | 46 | 50 | 0.9200 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.96 | 45.1404 | 13.63-149.4 | 13.6343 | 149.45 | 2.52e-15 | 14.5986 | reference_GenBank_coordinate_overlap | complement(1526915..1528090) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 2 | NC_009648.1_1835295_C_T | NC_009648.1_1835295_C_T | snp | NC_009648.1 | 1835295 | C | T | KPN_RS08925 | MFS transporter | KPN_RS08925 | MFS transporter | 44 | 50 | 0.8800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.81 | 39.7077 | 12.82-123 | 12.8214 | 122.974 | 4.66e-15 | 14.3316 | reference_GenBank_coordinate_overlap | 1834852..1836090 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 3 | NC_009648.1_5189501_G_A | NC_009648.1_5189501_G_A | snp | NC_009648.1 | 5189501 | G | A | KPN_RS25535 | CusA/CzcA family heavy metal efflux RNDtransporter | KPN_RS25535 | CusA/CzcA family heavy metal efflux RNDtransporter | 45 | 50 | 0.9000 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.71 | 36.1388 | 11.66-112 | 11.6588 | 112.019 | 2.2e-14 | 13.6576 | reference_GenBank_coordinate_overlap | complement(5187222..5190371) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 4 | NC_009648.1_5089875_A_G | NC_009648.1_5089875_A_G | snp | NC_009648.1 | 5089875 | A | G | pyrB | aspartate carbamoyltransferase | KPN_RS25100 | pyrB | aspartate carbamoyltransferase | 6 | 50 | 0.1200 | 42 | 50 | 0.8400 | controls (blaKPC negative) | -3.65 | 0.0292135 | 0.009682-0.08815 | 0.00968168 | 0.0881487 | 2.89e-14 | 13.5391 | reference_GenBank_coordinate_overlap | complement(5089755..5090690) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 5 | NC_009648.1_1633007_A_G | NC_009648.1_1633007_A_G | snp | NC_009648.1 | 1633007 | A | G | paaZ | phenylacetic acid degradation bifunctionalprotein PaaZ | KPN_RS07875 | paaZ | phenylacetic acid degradation bifunctionalprotein PaaZ | 43 | 50 | 0.8600 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.63 | 33.64 | 11.24-100.6 | 11.2435 | 100.649 | 3.15e-14 | 13.5017 | reference_GenBank_coordinate_overlap | complement(1631108..1633165) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 6 | NC_009648.1_3878098_G_A | NC_009648.1_3878098_G_A | snp | NC_009648.1 | 3878098 | G | A | KPN_RS19045 | Gfo/Idh/MocA family protein | KPN_RS19045 | Gfo/Idh/MocA family protein | 43 | 50 | 0.8600 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.63 | 33.64 | 11.24-100.6 | 11.2435 | 100.649 | 3.15e-14 | 13.5017 | reference_GenBank_coordinate_overlap | 3877637..3878626 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 7 | NC_009648.1_4996167_C_T | NC_009648.1_4996167_C_T | snp | NC_009648.1 | 4996167 | C | T | nnr | bifunctional ADP-dependent NAD(P)H-hydratedehydratase/NAD(P)H-hydrate epimerase | KPN_RS24615 | nnr | bifunctional ADP-dependent NAD(P)H-hydratedehydratase/NAD(P)H-hydrate epimerase | 43 | 50 | 0.8600 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.63 | 33.64 | 11.24-100.6 | 11.2435 | 100.649 | 3.15e-14 | 13.5017 | reference_GenBank_coordinate_overlap | 4994773..4996284 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 8 | NC_009648.1_977919_A_G | NC_009648.1_977919_A_G | snp | NC_009648.1 | 977919 | A | G | dacC | serine-type D-Ala-D-Ala carboxypeptidase | KPN_RS04700 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 47 | 50 | 0.9400 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.9 | 41.8 | 11.87-147.2 | 11.8662 | 147.245 | 3.27e-14 | 13.4855 | reference_GenBank_coordinate_overlap | 977437..978639 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 9 | NC_009648.1_4353275_G_C | NC_009648.1_4353275_G_C | snp | NC_009648.1 | 4353275 | G | C | KPN_RS21420 | glycosyltransferase family 4 protein | KPN_RS21420 | glycosyltransferase family 4 protein | 48 | 50 | 0.9600 | 14 | 50 | 0.2800 | cases (blaKPC positive) | 4.12 | 48.8345 | 11.93-199.9 | 11.9313 | 199.877 | 5.02e-14 | 13.2993 | reference_GenBank_coordinate_overlap | 4352240..4353367 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 10 | NC_009648.1_3649627_G_A | NC_009648.1_3649627_G_A | snp | NC_009648.1 | 3649627 | G | A | KPN_RS17855 | hypothetical protein | KPN_RS17855 | hypothetical protein | 46 | 50 | 0.9200 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.71 | 35.4928 | 11.02-114.3 | 11.0218 | 114.294 | 6.9e-14 | 13.1612 | reference_GenBank_coordinate_overlap | 3649282..3649641 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 11 | NC_009648.1_4953116_C_A | NC_009648.1_4953116_C_A | snp | NC_009648.1 | 4953116 | C | A | KPN_RS24395 | DUF1176 domain-containing protein | KPN_RS24395 | DUF1176 domain-containing protein | 46 | 50 | 0.9200 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.71 | 35.4928 | 11.02-114.3 | 11.0218 | 114.294 | 6.9e-14 | 13.1612 | reference_GenBank_coordinate_overlap | complement(4952138..4954225) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 12 | NC_009648.1_3696217_G_A | NC_009648.1_3696217_G_A | snp | NC_009648.1 | 3696217 | G | A | NC_009648.1_3696217_G_A | intergenic_or_unannotated | intergenic_or_unannotated | 45 | 50 | 0.9000 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.58 | 31.9091 | 10.46-97.33 | 10.4616 | 97.3264 | 1.16e-13 | 12.9355 | reference_GenBank_coordinate_overlap | . | SNP-level association; inspect population structure before causal interpretation. | ||||
| 13 | NC_009648.1_3638572_G_A | NC_009648.1_3638572_G_A | snp | NC_009648.1 | 3638572 | G | A | prfB | peptide chain release factor 2 | KPN_RS17795 | prfB | peptide chain release factor 2 | 47 | 50 | 0.9400 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.8 | 37.6984 | 10.79-131.7 | 10.7879 | 131.737 | 1.48e-13 | 12.8297 | reference_GenBank_coordinate_overlap | complement(join(3638524..3639546,3639548..3639622)) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 14 | NC_009648.1_5311960_C_T | NC_009648.1_5311960_C_T | snp | NC_009648.1 | 5311960 | C | T | creD | cell envelope integrity protein CreD | KPN_RS26185 | creD | cell envelope integrity protein CreD | 47 | 50 | 0.9400 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.8 | 37.6984 | 10.79-131.7 | 10.7879 | 131.737 | 1.48e-13 | 12.8297 | reference_GenBank_coordinate_overlap | 5311643..5313001 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 15 | NC_009648.1_906902_T_G | NC_009648.1_906902_T_G | snp | NC_009648.1 | 906902 | T | G | moaA | GTP 3',8-cyclase MoaA | KPN_RS04370 | moaA | GTP 3',8-cyclase MoaA | 6 | 50 | 0.1200 | 41 | 50 | 0.8200 | controls (blaKPC negative) | -3.51 | 0.0334371 | 0.01131-0.09882 | 0.0113138 | 0.0988214 | 1.6e-13 | 12.7959 | reference_GenBank_coordinate_overlap | 906015..907004 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 16 | NC_009648.1_952330_A_G | NC_009648.1_952330_A_G | snp | NC_009648.1 | 952330 | A | G | KPN_RS04605 | MFS transporter | KPN_RS04605 | MFS transporter | 44 | 50 | 0.8800 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.51 | 29.9069 | 10.12-88.39 | 10.1193 | 88.388 | 1.6e-13 | 12.7959 | reference_GenBank_coordinate_overlap | complement(952249..953550) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 17 | NC_009648.1_1675407_A_G | NC_009648.1_1675407_A_G | snp | NC_009648.1 | 1675407 | A | G | KPN_RS08085 | hypothetical protein | KPN_RS08085 | hypothetical protein | 44 | 50 | 0.8800 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.51 | 29.9069 | 10.12-88.39 | 10.1193 | 88.388 | 1.6e-13 | 12.7959 | reference_GenBank_coordinate_overlap | 1675370..1675849 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 18 | NC_009648.1_2534632_C_T | NC_009648.1_2534632_C_T | snp | NC_009648.1 | 2534632 | C | T | KPN_RS12455 | SpoVR family protein | KPN_RS12455 | SpoVR family protein | 44 | 50 | 0.8800 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.51 | 29.9069 | 10.12-88.39 | 10.1193 | 88.388 | 1.6e-13 | 12.7959 | reference_GenBank_coordinate_overlap | 2533310..2534842 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 19 | NC_009648.1_5063274_G_A | NC_009648.1_5063274_G_A | snp | NC_009648.1 | 5063274 | G | A | pmbA | metalloprotease PmbA | KPN_RS24955 | pmbA | metalloprotease PmbA | 44 | 50 | 0.8800 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.51 | 29.9069 | 10.12-88.39 | 10.1193 | 88.388 | 1.6e-13 | 12.7959 | reference_GenBank_coordinate_overlap | 5062579..5063931 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 20 | NC_009648.1_190323_G_A | NC_009648.1_190323_G_A | snp | NC_009648.1 | 190323 | G | A | gspB | type II secretion system assembly factor GspB | KPN_RS00875 | gspB | type II secretion system assembly factor GspB | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 189985..190542 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 21 | NC_009648.1_380046_C_A | NC_009648.1_380046_C_A | snp | NC_009648.1 | 380046 | C | A | NC_009648.1_380046_C_A | intergenic_or_unannotated | intergenic_or_unannotated | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | . | SNP-level association; inspect population structure before causal interpretation. | ||||
| 22 | NC_009648.1_823173_C_T | NC_009648.1_823173_C_T | snp | NC_009648.1 | 823173 | C | T | sucA | 2-oxoglutarate dehydrogenase E1 component | KPN_RS03935 | sucA | 2-oxoglutarate dehydrogenase E1 component | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 821815..824622 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 23 | NC_009648.1_1024446_G_A | NC_009648.1_1024446_G_A | snp | NC_009648.1 | 1024446 | G | A | clpA | ATP-dependent Clp protease ATP-binding subunitClpA | KPN_RS04925 | clpA | ATP-dependent Clp protease ATP-binding subunitClpA | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 1022830..1025109 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 24 | NC_009648.1_1170238_G_A | NC_009648.1_1170238_G_A | snp | NC_009648.1 | 1170238 | G | A | puuD | gamma-glutamyl-gamma-aminobutyrate hydrolase | KPN_RS05465 | puuD | gamma-glutamyl-gamma-aminobutyrate hydrolase | 7 | 50 | 0.1400 | 42 | 50 | 0.8400 | controls (blaKPC negative) | -3.47 | 0.0344828 | 0.01184-0.1004 | 0.0118391 | 0.100435 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(1169692..1170444) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 25 | NC_009648.1_2320980_C_T | NC_009648.1_2320980_C_T | snp | NC_009648.1 | 2320980 | C | T | mhpE | 4-hydroxy-2-oxovalerate aldolase | KPN_RS11410 | mhpE | 4-hydroxy-2-oxovalerate aldolase | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(2320326..2321342) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 26 | NC_009648.1_2545425_C_T | NC_009648.1_2545425_C_T | snp | NC_009648.1 | 2545425 | C | T | KPN_RS12525 | Slp family lipoprotein | KPN_RS12525 | Slp family lipoprotein | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(2545194..2545775) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 27 | NC_009648.1_2578858_C_G | NC_009648.1_2578858_C_G | snp | NC_009648.1 | 2578858 | C | G | pphA | protein-serine/threonine phosphatase | KPN_RS12695 | pphA | protein-serine/threonine phosphatase | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(2578580..2579233) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 28 | NC_009648.1_2941486_T_C | NC_009648.1_2941486_T_C | snp | NC_009648.1 | 2941486 | T | C | nuoH | NADH-quinone oxidoreductase subunit NuoH | KPN_RS14345 | nuoH | NADH-quinone oxidoreductase subunit NuoH | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(2940979..2941956) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 29 | NC_009648.1_3077308_C_T | NC_009648.1_3077308_C_T | snp | NC_009648.1 | 3077308 | C | T | dapE | succinyl-diaminopimelate desuccinylase | KPN_RS15050 | dapE | succinyl-diaminopimelate desuccinylase | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 3076277..3077404 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 30 | NC_009648.1_3548891_G_A | NC_009648.1_3548891_G_A | snp | NC_009648.1 | 3548891 | G | A | recC | exodeoxyribonuclease V subunit gamma | KPN_RS17320 | recC | exodeoxyribonuclease V subunit gamma | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(3545675..3549052) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 31 | NC_009648.1_3839337_A_G | NC_009648.1_3839337_A_G | snp | NC_009648.1 | 3839337 | A | G | KPN_RS18860 | ATP-binding protein | KPN_RS18860 | ATP-binding protein | 7 | 50 | 0.1400 | 42 | 50 | 0.8400 | controls (blaKPC negative) | -3.47 | 0.0344828 | 0.01184-0.1004 | 0.0118391 | 0.100435 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 3838120..3841362 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 32 | NC_009648.1_3994135_G_A | NC_009648.1_3994135_G_A | snp | NC_009648.1 | 3994135 | G | A | degS | outer membrane-stress sensor serineendopeptidase DegS | KPN_RS19675 | degS | outer membrane-stress sensor serineendopeptidase DegS | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 3993752..3994810 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 33 | NC_009648.1_4023612_T_C | NC_009648.1_4023612_T_C | snp | NC_009648.1 | 4023612 | T | C | NC_009648.1_4023612_T_C | intergenic_or_unannotated | intergenic_or_unannotated | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | . | SNP-level association; inspect population structure before causal interpretation. | ||||
| 34 | NC_009648.1_4023979_T_C | NC_009648.1_4023979_T_C | snp | NC_009648.1 | 4023979 | T | C | msrP | protein-methionine-sulfoxide reductase catalyticsubunit MsrP | KPN_RS19815 | msrP | protein-methionine-sulfoxide reductase catalyticsubunit MsrP | 8 | 50 | 0.1600 | 43 | 50 | 0.8600 | controls (blaKPC negative) | -3.47 | 0.0344828 | 0.01184-0.1004 | 0.0118391 | 0.100435 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 4023757..4024758 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 35 | NC_009648.1_5043054_T_C | NC_009648.1_5043054_T_C | snp | NC_009648.1 | 5043054 | T | C | tamA | autotransporter assembly complex protein TamA | KPN_RS24870 | tamA | autotransporter assembly complex protein TamA | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | 5042851..5044584 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 36 | NC_009648.1_5089902_C_T | NC_009648.1_5089902_C_T | snp | NC_009648.1 | 5089902 | C | T | pyrB | aspartate carbamoyltransferase | KPN_RS25100 | pyrB | aspartate carbamoyltransferase | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 12.7258 | reference_GenBank_coordinate_overlap | complement(5089755..5090690) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 37 | NC_009648.1_86148_G_A | NC_009648.1_86148_G_A | snp | NC_009648.1 | 86148 | G | A | KPN_RS00400 | MFS transporter | KPN_RS00400 | MFS transporter | 49 | 50 | 0.9800 | 17 | 50 | 0.3400 | cases (blaKPC positive) | 4.15 | 63.1714 | 11.26-354.3 | 11.2644 | 354.268 | 2.24e-13 | 12.6498 | reference_GenBank_coordinate_overlap | complement(85959..87173) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 38 | NC_009648.1_5014267_A_G | NC_009648.1_5014267_A_G | snp | NC_009648.1 | 5014267 | A | G | yjfP | esterase | KPN_RS24710 | yjfP | esterase | 1 | 50 | 0.0200 | 33 | 50 | 0.6600 | controls (blaKPC negative) | -4.15 | 0.0158299 | 0.002823-0.08877 | 0.00282272 | 0.0887749 | 2.24e-13 | 12.6498 | reference_GenBank_coordinate_overlap | 5013740..5014456 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 39 | NC_009648.1_5297612_C_T | NC_009648.1_5297612_C_T | snp | NC_009648.1 | 5297612 | C | T | lplA | lipoate--protein ligase LplA | KPN_RS26115 | lplA | lipoate--protein ligase LplA | 1 | 50 | 0.0200 | 33 | 50 | 0.6600 | controls (blaKPC negative) | -4.15 | 0.0158299 | 0.002823-0.08877 | 0.00282272 | 0.0887749 | 2.24e-13 | 12.6498 | reference_GenBank_coordinate_overlap | complement(5296914..5297930) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 40 | NC_009648.1_113245_C_T | NC_009648.1_113245_C_T | snp | NC_009648.1 | 113245 | C | T | murC | UDP-N-acetylmuramate--L-alanine ligase | KPN_RS00510 | murC | UDP-N-acetylmuramate--L-alanine ligase | 46 | 50 | 0.9200 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.6 | 31.8267 | 9.987-101.4 | 9.98663 | 101.429 | 3.21e-13 | 12.4935 | reference_GenBank_coordinate_overlap | 112531..114006 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 41 | NC_009648.1_679870_G_A | NC_009648.1_679870_G_A | snp | NC_009648.1 | 679870 | G | A | fepA | siderophore enterobactin receptor FepA | KPN_RS03250 | fepA | siderophore enterobactin receptor FepA | 46 | 50 | 0.9200 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.6 | 31.8267 | 9.987-101.4 | 9.98663 | 101.429 | 3.21e-13 | 12.4935 | reference_GenBank_coordinate_overlap | complement(679165..681393) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 42 | NC_009648.1_2505495_A_G | NC_009648.1_2505495_A_G | snp | NC_009648.1 | 2505495 | A | G | livM | high-affinity branched-chain amino acid ABCtransporter permease LivM | KPN_RS12330 | livM | high-affinity branched-chain amino acid ABCtransporter permease LivM | 5 | 50 | 0.1000 | 39 | 50 | 0.7800 | controls (blaKPC negative) | -3.46 | 0.0351927 | 0.01169-0.1059 | 0.0116922 | 0.105927 | 5.59e-13 | 12.2526 | reference_GenBank_coordinate_overlap | complement(2504784..2506070) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 43 | NC_009648.1_3337560_C_T | NC_009648.1_3337560_C_T | snp | NC_009648.1 | 3337560 | C | T | gutQ | arabinose-5-phosphate isomerase GutQ | KPN_RS16315 | gutQ | arabinose-5-phosphate isomerase GutQ | 45 | 50 | 0.9000 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.46 | 28.415 | 9.44-85.53 | 9.44047 | 85.5269 | 5.59e-13 | 12.2526 | reference_GenBank_coordinate_overlap | 3336745..3337710 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 44 | NC_009648.1_3696291_A_G | NC_009648.1_3696291_A_G | snp | NC_009648.1 | 3696291 | A | G | speA | biosynthetic arginine decarboxylase | KPN_RS18085 | speA | biosynthetic arginine decarboxylase | 45 | 50 | 0.9000 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.46 | 28.415 | 9.44-85.53 | 9.44047 | 85.5269 | 5.59e-13 | 12.2526 | reference_GenBank_coordinate_overlap | complement(3696219..3698195) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 45 | NC_009648.1_4932553_G_C | NC_009648.1_4932553_G_C | snp | NC_009648.1 | 4932553 | G | C | melB | melibiose:sodium transporter MelB | KPN_RS24270 | melB | melibiose:sodium transporter MelB | 45 | 50 | 0.9000 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.46 | 28.415 | 9.44-85.53 | 9.44047 | 85.5269 | 5.59e-13 | 12.2526 | reference_GenBank_coordinate_overlap | 4931636..4933051 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 46 | NC_009648.1_5191328_G_A | NC_009648.1_5191328_G_A | snp | NC_009648.1 | 5191328 | G | A | KPN_RS25540 | efflux RND transporter periplasmic adaptorsubunit | KPN_RS25540 | efflux RND transporter periplasmic adaptorsubunit | 45 | 50 | 0.9000 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.46 | 28.415 | 9.44-85.53 | 9.44047 | 85.5269 | 5.59e-13 | 12.2526 | reference_GenBank_coordinate_overlap | complement(5190383..5191645) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 47 | NC_009648.1_2839187_G_A | NC_009648.1_2839187_G_A | snp | NC_009648.1 | 2839187 | G | A | mglB | galactose/glucose ABC transportersubstrate-binding protein MglB | KPN_RS13915 | mglB | galactose/glucose ABC transportersubstrate-binding protein MglB | 47 | 50 | 0.9400 | 14 | 50 | 0.2800 | cases (blaKPC positive) | 3.7 | 34.1626 | 9.842-118.6 | 9.84218 | 118.579 | 6.28e-13 | 12.2020 | reference_GenBank_coordinate_overlap | complement(2839034..2840032) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 48 | NC_009648.1_321518_T_C | NC_009648.1_321518_T_C | snp | NC_009648.1 | 321518 | T | C | KPN_RS01520 | NlpC/P60 family protein | KPN_RS01520 | NlpC/P60 family protein | 44 | 50 | 0.8800 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.38 | 26.4066 | 9.087-76.74 | 9.08671 | 76.7394 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | complement(321074..321640) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 49 | NC_009648.1_1431373_A_C | NC_009648.1_1431373_A_C | snp | NC_009648.1 | 1431373 | A | C | acnA | aconitate hydratase AcnA | KPN_RS06830 | acnA | aconitate hydratase AcnA | 6 | 50 | 0.1200 | 40 | 50 | 0.8000 | controls (blaKPC negative) | -3.38 | 0.0378693 | 0.01303-0.1101 | 0.0130311 | 0.110051 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | 1428761..1431433 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 50 | NC_009648.1_3791252_C_T | NC_009648.1_3791252_C_T | snp | NC_009648.1 | 3791252 | C | T | KPN_RS18570 | urease subunit gamma | KPN_RS18570 | urease subunit gamma | 44 | 50 | 0.8800 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.38 | 26.4066 | 9.087-76.74 | 9.08671 | 76.7394 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | 3791067..3791369 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 51 | NC_009648.1_3871786_G_A | NC_009648.1_3871786_G_A | snp | NC_009648.1 | 3871786 | G | A | lsrK | autoinducer-2 kinase | KPN_RS19015 | lsrK | autoinducer-2 kinase | 44 | 50 | 0.8800 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.38 | 26.4066 | 9.087-76.74 | 9.08671 | 76.7394 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | 3870563..3872161 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 52 | NC_009648.1_3953839_A_G | NC_009648.1_3953839_A_G | snp | NC_009648.1 | 3953839 | A | G | dacB | serine-type D-Ala-D-Ala carboxypeptidase | KPN_RS19460 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 6 | 50 | 0.1200 | 40 | 50 | 0.8000 | controls (blaKPC negative) | -3.38 | 0.0378693 | 0.01303-0.1101 | 0.0130311 | 0.110051 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | 3952525..3953958 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 53 | NC_009648.1_4454453_A_G | NC_009648.1_4454453_A_G | snp | NC_009648.1 | 4454453 | A | G | nepI | purine ribonucleoside efflux pump NepI | KPN_RS21935 | nepI | purine ribonucleoside efflux pump NepI | 6 | 50 | 0.1200 | 40 | 50 | 0.8000 | controls (blaKPC negative) | -3.38 | 0.0378693 | 0.01303-0.1101 | 0.0130311 | 0.110051 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | complement(4453553..4454746) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 54 | NC_009648.1_4527657_C_T | NC_009648.1_4527657_C_T | snp | NC_009648.1 | 4527657 | C | T | pstS | phosphate ABC transporter substrate-bindingprotein PstS | KPN_RS22290 | pstS | phosphate ABC transporter substrate-bindingprotein PstS | 44 | 50 | 0.8800 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.38 | 26.4066 | 9.087-76.74 | 9.08671 | 76.7394 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | complement(4526967..4528007) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 55 | NC_009648.1_4631030_C_T | NC_009648.1_4631030_C_T | snp | NC_009648.1 | 4631030 | C | T | priA | primosomal protein N' | KPN_RS22805 | priA | primosomal protein N' | 44 | 50 | 0.8800 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.38 | 26.4066 | 9.087-76.74 | 9.08671 | 76.7394 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | complement(4630499..4632694) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 56 | NC_009648.1_4933506_T_C | NC_009648.1_4933506_T_C | snp | NC_009648.1 | 4933506 | T | C | parM | plasmid segregation protein ParMdomain-containing protein | KPN_RS24280 | parM | plasmid segregation protein ParMdomain-containing protein | 44 | 50 | 0.8800 | 10 | 50 | 0.2000 | cases (blaKPC positive) | 3.38 | 26.4066 | 9.087-76.74 | 9.08671 | 76.7394 | 8.11e-13 | 12.0910 | reference_GenBank_coordinate_overlap | 4933327..4934283 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 57 | NC_009648.1_4812267_A_G | NC_009648.1_4812267_A_G | snp | NC_009648.1 | 4812267 | A | G | aceK | bifunctional isocitrate dehydrogenasekinase/phosphatase | KPN_RS23675 | aceK | bifunctional isocitrate dehydrogenasekinase/phosphatase | 1 | 50 | 0.0200 | 32 | 50 | 0.6400 | controls (blaKPC negative) | -4.06 | 0.0172494 | 0.003083-0.0965 | 0.00308329 | 0.0965016 | 8.27e-13 | 12.0825 | reference_GenBank_coordinate_overlap | 4810534..4812318 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 58 | NC_009648.1_5014274_C_T | NC_009648.1_5014274_C_T | snp | NC_009648.1 | 5014274 | C | T | yjfP | esterase | KPN_RS24710 | yjfP | esterase | 1 | 50 | 0.0200 | 32 | 50 | 0.6400 | controls (blaKPC negative) | -4.06 | 0.0172494 | 0.003083-0.0965 | 0.00308329 | 0.0965016 | 8.27e-13 | 12.0825 | reference_GenBank_coordinate_overlap | 5013740..5014456 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 59 | NC_009648.1_709794_G_A | NC_009648.1_709794_G_A | snp | NC_009648.1 | 709794 | G | A | mtnK | S-methyl-5-thioribose kinase | KPN_RS03370 | mtnK | S-methyl-5-thioribose kinase | 48 | 50 | 0.9600 | 16 | 50 | 0.3200 | cases (blaKPC positive) | 3.93 | 40.5636 | 10-164.5 | 10.0028 | 164.495 | 8.33e-13 | 12.0794 | reference_GenBank_coordinate_overlap | complement(709024..710223) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 60 | NC_009648.1_4933602_A_G | NC_009648.1_4933602_A_G | snp | NC_009648.1 | 4933602 | A | G | parM | plasmid segregation protein ParMdomain-containing protein | KPN_RS24280 | parM | plasmid segregation protein ParMdomain-containing protein | 48 | 50 | 0.9600 | 16 | 50 | 0.3200 | cases (blaKPC positive) | 3.93 | 40.5636 | 10-164.5 | 10.0028 | 164.495 | 8.33e-13 | 12.0794 | reference_GenBank_coordinate_overlap | 4933327..4934283 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 61 | NC_009648.1_48383_C_G | NC_009648.1_48383_C_G | snp | NC_009648.1 | 48383 | C | G | kefC | glutathione-regulated potassium-efflux systemprotein KefC | KPN_RS00235 | kefC | glutathione-regulated potassium-efflux systemprotein KefC | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 47946..49811 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 62 | NC_009648.1_186710_C_T | NC_009648.1_186710_C_T | snp | NC_009648.1 | 186710 | C | T | pulA | pullulanase-type alpha-1,6-glucosidase | KPN_RS00870 | pulA | pullulanase-type alpha-1,6-glucosidase | 7 | 50 | 0.1400 | 41 | 50 | 0.8200 | controls (blaKPC negative) | -3.33 | 0.0394682 | 0.01384-0.1125 | 0.0138446 | 0.112516 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 186420..189728 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 63 | NC_009648.1_1229133_T_C | NC_009648.1_1229133_T_C | snp | NC_009648.1 | 1229133 | T | C | murJ | murein biosynthesis integral membrane proteinMurJ | KPN_RS05775 | murJ | murein biosynthesis integral membrane proteinMurJ | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 1228066..1229601 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 64 | NC_009648.1_3228339_C_T | NC_009648.1_3228339_C_T | snp | NC_009648.1 | 3228339 | C | T | recN | DNA repair protein RecN | KPN_RS15760 | recN | DNA repair protein RecN | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 3227581..3229242 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 65 | NC_009648.1_3878482_G_A | NC_009648.1_3878482_G_A | snp | NC_009648.1 | 3878482 | G | A | KPN_RS19045 | Gfo/Idh/MocA family protein | KPN_RS19045 | Gfo/Idh/MocA family protein | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 3877637..3878626 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 66 | NC_009648.1_4444594_C_T | NC_009648.1_4444594_C_T | snp | NC_009648.1 | 4444594 | C | T | KPN_RS21885 | PTS cellobiose transporter subunit IIC | KPN_RS21885 | PTS cellobiose transporter subunit IIC | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 4443365..4444687 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 67 | NC_009648.1_4640759_A_G | NC_009648.1_4640759_A_G | snp | NC_009648.1 | 4640759 | A | G | KPN_RS22845 | LysR family transcriptional regulator | KPN_RS22845 | LysR family transcriptional regulator | 7 | 50 | 0.1400 | 41 | 50 | 0.8200 | controls (blaKPC negative) | -3.33 | 0.0394682 | 0.01384-0.1125 | 0.0138446 | 0.112516 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 4640748..4641656 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 68 | NC_009648.1_4669531_G_A | NC_009648.1_4669531_G_A | snp | NC_009648.1 | 4669531 | G | A | hdfR | HTH-type transcriptional regulator HdfR | KPN_RS22975 | hdfR | HTH-type transcriptional regulator HdfR | 41 | 50 | 0.8200 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | complement(4668886..4669707) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 69 | NC_009648.1_4813951_C_T | NC_009648.1_4813951_C_T | snp | NC_009648.1 | 4813951 | C | T | metH | methionine synthase | KPN_RS23685 | metH | methionine synthase | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 4813394..4817077 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 70 | NC_009648.1_4996008_A_G | NC_009648.1_4996008_A_G | snp | NC_009648.1 | 4996008 | A | G | nnr | bifunctional ADP-dependent NAD(P)H-hydratedehydratase/NAD(P)H-hydrate epimerase | KPN_RS24615 | nnr | bifunctional ADP-dependent NAD(P)H-hydratedehydratase/NAD(P)H-hydrate epimerase | 7 | 50 | 0.1400 | 41 | 50 | 0.8200 | controls (blaKPC negative) | -3.33 | 0.0394682 | 0.01384-0.1125 | 0.0138446 | 0.112516 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | 4994773..4996284 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 71 | NC_009648.1_5225818_C_T | NC_009648.1_5225818_C_T | snp | NC_009648.1 | 5225818 | C | T | mdtM | multidrug efflux MFS transporter MdtM | KPN_RS25715 | mdtM | multidrug efflux MFS transporter MdtM | 43 | 50 | 0.8600 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.33 | 25.3368 | 8.888-72.23 | 8.88759 | 72.2306 | 1.01e-12 | 11.9957 | reference_GenBank_coordinate_overlap | complement(5224969..5226210) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 72 | NC_009648.1_154620_A_G | NC_009648.1_154620_A_G | snp | NC_009648.1 | 154620 | A | G | KPN_RS00695 | hypothetical protein | KPN_RS00695 | hypothetical protein | 8 | 50 | 0.1600 | 42 | 50 | 0.8400 | controls (blaKPC negative) | -3.32 | 0.04 | 0.01412-0.1133 | 0.0141172 | 0.113337 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | complement(154476..154886) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 73 | NC_009648.1_281659_G_A | NC_009648.1_281659_G_A | snp | NC_009648.1 | 281659 | G | A | pepD | cytosol nonspecific dipeptidase | KPN_RS01325 | pepD | cytosol nonspecific dipeptidase | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | complement(280879..282336) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 74 | NC_009648.1_485180_G_A | NC_009648.1_485180_G_A | snp | NC_009648.1 | 485180 | G | A | acrB | multidrug efflux RND transporter permeasesubunit AcrB | KPN_RS02355 | acrB | multidrug efflux RND transporter permeasesubunit AcrB | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | complement(484760..487906) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 75 | NC_009648.1_801246_G_A | NC_009648.1_801246_G_A | snp | NC_009648.1 | 801246 | G | A | kdpD | two-component system sensor histidine kinaseKdpD | KPN_RS03830 | kdpD | two-component system sensor histidine kinaseKdpD | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | complement(798871..801558) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 76 | NC_009648.1_3716658_T_C | NC_009648.1_3716658_T_C | snp | NC_009648.1 | 3716658 | T | C | KPN_RS18205 | nucleoside permease | KPN_RS18205 | nucleoside permease | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | 3716341..3717594 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 77 | NC_009648.1_4324886_A_G | NC_009648.1_4324886_A_G | snp | NC_009648.1 | 4324886 | A | G | mtlA | PTS mannitol transporter subunit IICBA | KPN_RS21280 | mtlA | PTS mannitol transporter subunit IICBA | 8 | 50 | 0.1600 | 42 | 50 | 0.8400 | controls (blaKPC negative) | -3.32 | 0.04 | 0.01412-0.1133 | 0.0141172 | 0.113337 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | 4324098..4326005 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 78 | NC_009648.1_5100720_G_A | NC_009648.1_5100720_G_A | snp | NC_009648.1 | 5100720 | G | A | lptF | LPS export ABC transporter permease LptF | KPN_RS25145 | lptF | LPS export ABC transporter permease LptF | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 11.9666 | reference_GenBank_coordinate_overlap | 5100157..5101254 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 79 | NC_009648.1_18373_C_A | NC_009648.1_18373_C_A | snp | NC_009648.1 | 18373 | C | A | nhaR | transcriptional activator NhaR | KPN_RS00085 | nhaR | transcriptional activator NhaR | 46 | 50 | 0.9200 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | 18157..19053 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 80 | NC_009648.1_354570_A_G | NC_009648.1_354570_A_G | snp | NC_009648.1 | 354570 | A | G | tauD | taurine dioxygenase | KPN_RS01690 | tauD | taurine dioxygenase | 4 | 50 | 0.0800 | 37 | 50 | 0.7400 | controls (blaKPC negative) | -3.49 | 0.0348387 | 0.01103-0.1101 | 0.0110273 | 0.110066 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | 354004..354855 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 81 | NC_009648.1_1005470_C_T | NC_009648.1_1005470_C_T | snp | NC_009648.1 | 1005470 | C | T | KPN_RS04850 | N-acetylmuramoyl-L-alanine amidase | KPN_RS04850 | N-acetylmuramoyl-L-alanine amidase | 46 | 50 | 0.9200 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | 1005159..1005989 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 82 | NC_009648.1_1283403_G_A | NC_009648.1_1283403_G_A | snp | NC_009648.1 | 1283403 | G | A | KPN_RS06035 | aldehyde dehydrogenase family protein | KPN_RS06035 | aldehyde dehydrogenase family protein | 46 | 50 | 0.9200 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | 1282258..1283982 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 83 | NC_009648.1_1307969_C_T | NC_009648.1_1307969_C_T | snp | NC_009648.1 | 1307969 | C | T | KPN_RS06175 | cytochrome ubiquinol oxidase subunit I | KPN_RS06175 | cytochrome ubiquinol oxidase subunit I | 46 | 50 | 0.9200 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | 1306793..1308199 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 84 | NC_009648.1_1827585_G_A | NC_009648.1_1827585_G_A | snp | NC_009648.1 | 1827585 | G | A | NC_009648.1_1827585_G_A | intergenic_or_unannotated | intergenic_or_unannotated | 46 | 50 | 0.9200 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | . | SNP-level association; inspect population structure before causal interpretation. | ||||
| 85 | NC_009648.1_2061803_G_T | NC_009648.1_2061803_G_T | snp | NC_009648.1 | 2061803 | G | T | benB | benzoate 1,2-dioxygenase small subunit | KPN_RS10075 | benB | benzoate 1,2-dioxygenase small subunit | 46 | 50 | 0.9200 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | complement(2061606..2062091) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 86 | NC_009648.1_5189475_C_T | NC_009648.1_5189475_C_T | snp | NC_009648.1 | 5189475 | C | T | KPN_RS25535 | CusA/CzcA family heavy metal efflux RNDtransporter | KPN_RS25535 | CusA/CzcA family heavy metal efflux RNDtransporter | 4 | 50 | 0.0800 | 37 | 50 | 0.7400 | controls (blaKPC negative) | -3.49 | 0.0348387 | 0.01103-0.1101 | 0.0110273 | 0.110066 | 1.4e-12 | 11.8539 | reference_GenBank_coordinate_overlap | complement(5187222..5190371) | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 87 | NC_009648.1_45607_G_A | NC_009648.1_45607_G_A | snp | NC_009648.1 | 45607 | G | A | carB | carbamoyl-phosphate synthase large subunit | KPN_RS00220 | carB | carbamoyl-phosphate synthase large subunit | 45 | 50 | 0.9000 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.35 | 25.48 | 8.559-75.85 | 8.55928 | 75.851 | 2.5e-12 | 11.6021 | reference_GenBank_coordinate_overlap | 43661..46885 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 88 | NC_009648.1_101937_C_T | NC_009648.1_101937_C_T | snp | NC_009648.1 | 101937 | C | T | rsmH | 16S rRNA (cytosine(1402)-N(4))-methyltransferaseRsmH | KPN_RS00465 | rsmH | 16S rRNA (cytosine(1402)-N(4))-methyltransferaseRsmH | 45 | 50 | 0.9000 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.35 | 25.48 | 8.559-75.85 | 8.55928 | 75.851 | 2.5e-12 | 11.6021 | reference_GenBank_coordinate_overlap | 101833..102774 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 89 | NC_009648.1_3878223_A_G | NC_009648.1_3878223_A_G | snp | NC_009648.1 | 3878223 | A | G | KPN_RS19045 | Gfo/Idh/MocA family protein | KPN_RS19045 | Gfo/Idh/MocA family protein | 45 | 50 | 0.9000 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.35 | 25.48 | 8.559-75.85 | 8.55928 | 75.851 | 2.5e-12 | 11.6021 | reference_GenBank_coordinate_overlap | 3877637..3878626 | . | SNP-level association; inspect population structure before causal interpretation. | ||
| 90 | NC_009648.1_4053789_A_G | NC_009648.1_4053789_A_G | snp | NC_009648.1 | 4053789 | A | G | zntR | Zn(2+)-responsive transcriptional regulator | KPN_RS19970 | zntR | Zn(2+)-responsive transcriptional regulator | 45 | 50 | 0.9000 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.35 | 25.48 | 8.559-75.85 | 8.55928 | 75.851 | 2.5e-12 | 11.6021 | reference_GenBank_coordinate_overlap | complement(4053396..4053821) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 91 | NC_009648.1_4810422_T_G | NC_009648.1_4810422_T_G | snp | NC_009648.1 | 4810422 | T | G | aceA | isocitrate lyase | KPN_RS23670 | aceA | isocitrate lyase | 45 | 50 | 0.9000 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.35 | 25.48 | 8.559-75.85 | 8.55928 | 75.851 | 2.5e-12 | 11.6021 | reference_GenBank_coordinate_overlap | 4809127..4810431 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 92 | NC_009648.1_1433973_A_G | NC_009648.1_1433973_A_G | snp | NC_009648.1 | 1433973 | A | G | lapB | lipopolysaccharide assembly protein LapB | KPN_RS06850 | lapB | lipopolysaccharide assembly protein LapB | 3 | 50 | 0.0600 | 35 | 50 | 0.7000 | controls (blaKPC negative) | -3.6 | 0.032172 | 0.009322-0.111 | 0.00932158 | 0.111037 | 2.52e-12 | 11.5986 | reference_GenBank_coordinate_overlap | 1433464..1434633 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 93 | NC_009648.1_3871429_T_C | NC_009648.1_3871429_T_C | snp | NC_009648.1 | 3871429 | T | C | lsrK | autoinducer-2 kinase | KPN_RS19015 | lsrK | autoinducer-2 kinase | 3 | 50 | 0.0600 | 35 | 50 | 0.7000 | controls (blaKPC negative) | -3.6 | 0.032172 | 0.009322-0.111 | 0.00932158 | 0.111037 | 2.52e-12 | 11.5986 | reference_GenBank_coordinate_overlap | 3870563..3872161 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 94 | NC_009648.1_3871432_C_G | NC_009648.1_3871432_C_G | snp | NC_009648.1 | 3871432 | C | G | lsrK | autoinducer-2 kinase | KPN_RS19015 | lsrK | autoinducer-2 kinase | 3 | 50 | 0.0600 | 35 | 50 | 0.7000 | controls (blaKPC negative) | -3.6 | 0.032172 | 0.009322-0.111 | 0.00932158 | 0.111037 | 2.52e-12 | 11.5986 | reference_GenBank_coordinate_overlap | 3870563..3872161 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 95 | NC_009648.1_4749193_A_G | NC_009648.1_4749193_A_G | snp | NC_009648.1 | 4749193 | A | G | fadB | fatty acid oxidation complex subunit alpha FadB | KPN_RS23380 | fadB | fatty acid oxidation complex subunit alpha FadB | 47 | 50 | 0.9400 | 15 | 50 | 0.3000 | cases (blaKPC positive) | 3.6 | 31.0829 | 9.006-107.3 | 9.00604 | 107.278 | 2.52e-12 | 11.5986 | reference_GenBank_coordinate_overlap | complement(4748470..4750659) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 96 | NC_009648.1_4784547_C_T | NC_009648.1_4784547_C_T | snp | NC_009648.1 | 4784547 | C | T | thiG | thiazole synthase | KPN_RS23540 | thiG | thiazole synthase | 47 | 50 | 0.9400 | 15 | 50 | 0.3000 | cases (blaKPC positive) | 3.6 | 31.0829 | 9.006-107.3 | 9.00604 | 107.278 | 2.52e-12 | 11.5986 | reference_GenBank_coordinate_overlap | complement(4783967..4784737) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 97 | NC_009648.1_4784549_G_A | NC_009648.1_4784549_G_A | snp | NC_009648.1 | 4784549 | G | A | thiG | thiazole synthase | KPN_RS23540 | thiG | thiazole synthase | 47 | 50 | 0.9400 | 15 | 50 | 0.3000 | cases (blaKPC positive) | 3.6 | 31.0829 | 9.006-107.3 | 9.00604 | 107.278 | 2.52e-12 | 11.5986 | reference_GenBank_coordinate_overlap | complement(4783967..4784737) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 98 | NC_009648.1_1646913_A_G | NC_009648.1_1646913_A_G | snp | NC_009648.1 | 1646913 | A | G | hrpA | ATP-dependent RNA helicase HrpA | KPN_RS07955 | hrpA | ATP-dependent RNA helicase HrpA | 49 | 50 | 0.9800 | 19 | 50 | 0.3800 | cases (blaKPC positive) | 3.98 | 53.3077 | 9.548-297.6 | 9.54773 | 297.632 | 2.94e-12 | 11.5317 | reference_GenBank_coordinate_overlap | 1645888..1649790 | . | SNP-level association; inspect population structure before causal interpretation. | |
| 99 | NC_009648.1_325884_C_A | NC_009648.1_325884_C_A | snp | NC_009648.1 | 325884 | C | A | phnE | phosphonate ABC transporter, permease proteinPhnE | KPN_RS01545 | phnE | phosphonate ABC transporter, permease proteinPhnE | 2 | 50 | 0.0400 | 33 | 50 | 0.6600 | controls (blaKPC negative) | -3.84 | 0.0269272 | 0.006664-0.1088 | 0.00666386 | 0.108807 | 3.15e-12 | 11.5017 | reference_GenBank_coordinate_overlap | complement(325875..326747) | . | SNP-level association; inspect population structure before causal interpretation. | |
| 100 | NC_009648.1_795600_G_A | NC_009648.1_795600_G_A | snp | NC_009648.1 | 795600 | G | A | seqA | replication initiation negative regulator SeqA | KPN_RS03810 | seqA | replication initiation negative regulator SeqA | 48 | 50 | 0.9600 | 17 | 50 | 0.3400 | cases (blaKPC positive) | 3.84 | 37.1371 | 9.191-150.1 | 9.19057 | 150.063 | 3.15e-12 | 11.5017 | reference_GenBank_coordinate_overlap | 795502..796050 | . | SNP-level association; inspect population structure before causal interpretation. |
Showing 100 of 100 rows.
metric value snp_gwas_status prioritized pyseer_snp_rows 212956 ranked_snp_features 212956 significant_snp_features 18622 alpha 0.05
Recombination intervals: 6023. Output files: rMAP_GWAS_SNP_gubbins_summary.tsv, rMAP_GWAS_SNP_gubbins.filtered_polymorphic_sites.fasta, rMAP_GWAS_SNP_gubbins.recombination_predictions.gff, and rMAP_GWAS_SNP_gubbins.log.
metric value gubbins_status run seq_count 101 input_snp_records 213997 filtered_snp_records 213997 recombination_intervals 6023 filtering_note Primary SNP VCF filtered by removing variants inside Gubbins-predicted recombinant regions. recommendation Use do_gubbins=true for recombining bacteria such as Klebsiella pneumoniae, Escherichia coli, Salmonella, Streptococcus pneumoniae, Neisseria spp., and some Acinetobacter datasets, or when lineage/recombination structure is suspected. For MTBC and other highly clonal organisms, keep this optional and interpret mainly with SNP GWAS plus population-structure checks. usage_note When enabled and Gubbins succeeds, SNP GWAS uses the Gubbins-filtered VCF; when skipped or unavailable, the original Snippy SNP VCF is used and the reason is recorded here.
UDP-N-acetyl-D-mannosamine dehydrogenase
VOC family protein
alanine/glycine:cation symporter family protein
YbdK family carboxylate-amine ligase
bifunctional riboflavin kinase/FAD synthetase
| rank | feature id | feature type | display name | display label | gene name | product | reference locus tag | reference gene | reference product | annotation confidence | reference identity | reference coverage | interpretation note | annotation evidence | case (blaKPC positive) present | case (blaKPC positive) total | case (blaKPC positive) frequency | control (blaKPC negative) present | control (blaKPC negative) total | control (blaKPC negative) frequency | enriched in | beta | odds ratio | odds ratio ci95 | odds ratio ci95 lower | odds ratio ci95 upper | pyseer pvalue | q value | priority score | annotation source | reference match type | reference location | annotation note | cluster member ids | notes | display product |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | blaKPC67~~~blaKPC2 | gene_presence_absence | blaKPC-67;blaKPC-2 | blaKPC67~~~blaKPC2 | KPN_RS23095 | none confidence | blaKPC-67;blaKPC-2 | inhibitor-resistant carbapenem-hydrolyzing class A beta-lactamase KPC-67;carbapenem-hydrolyzing class A beta-lactamase KPC-2 | KPN_RS23095 | wecC | UDP-N-acetyl-D-mannosamine dehydrogenase | none | 18.12 | 1.67 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=18.12; coverage=1.67 | 50 | 50 | 1.0000 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 5.64 | 280.556 | 16.16-4870 | 16.161 | 4870.44 | 2.27e-17 | 27.7761 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4695680..4696942 | matched_representative_sequence=blaKPC67~~~blaKPC2 | ACMLHL_04658;AENLJA_04785;AEOABF_05514;AHHNMN_05377;AHNHFK_04957;ANNNIK_04399;BEDDGA_05706;BGGBBI_03022;BLCKKP_05532;BMDOOG_04890;CBCBPB_05547;CHCLDJ_05485;CPJPGI_05429;DFFEKE_04972;DGLKOJ_05282;DMJFLM_05327;EKPLKB_05140;EMKGNF_05188;EOIIEI_04855;FIIMIJ_04893;FMDNFB_05254;FPBJNE_05333;FPPMFH_04410;GCNAEO_05349;GHEABH_04713;GNFDFK_05248;GOALEL_04643;HBAILA_05275;HBKCOO_05216;IBBJOJ_05467 | UDP-N-acetyl-D-mannosamine dehydrogenase | ||
| 2 | group_8655 | gene_presence_absence | ;tnp | group_8655 | KPN_RS08915 | none confidence | ;tnp | Transposase IS4-like domain-containing protein;hypothetical protein;IS1182 family ISKpn6 transposase | KPN_RS08915 | VOC family protein | none | 26.78 | 1.14 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=26.78; coverage=1.14 | 49 | 50 | 0.9800 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.52 | 91.6667 | 16.1-522 | 16.0982 | 521.968 | 7.52e-16 | 24.6421 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1833037..1833792 | matched_representative_sequence=group_8655 | ACMLHL_04657;AENLJA_04784;AEOABF_05513;AHHNMN_05376;AHNHFK_04956;ANNNIK_04398;BEDDGA_05705;BGGBBI_03023;BLCKKP_05533;BMDOOG_04891;CBCBPB_05546;CHCLDJ_05484;CPJPGI_05428;DFFEKE_04971;DGLKOJ_05281;DMJFLM_05326;EKPLKB_05141;EMKGNF_05187;EOIIEI_04854;FIIMIJ_04894;FMDNFB_05255;FPBJNE_05332;FPPMFH_04411;GCNAEO_05350;GHEABH_04675;GOALEL_04644;HBAILA_05274;HBKCOO_05217;IBBJOJ_05466;IECKKB_05470 | VOC family protein | |||
| 3 | group_8585 | gene_presence_absence | ;tnpA | group_8585 | KPN_RS00035 | none confidence | ;tnpA | Tn3 family transposase;hypothetical protein;Tn3-like element Tn4401 family transposase | KPN_RS00035 | alanine/glycine:cation symporter family protein | none | 27.66 | 0.40 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.66; coverage=0.40 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(6630..8060) | matched_representative_sequence=group_8585 | ACMLHL_04661;AENLJA_04788;AEOABF_05517;AHHNMN_05380;ANNNIK_04402;BEDDGA_05370;BGGBBI_03019;BLCKKP_05529;BMDOOG_04887;CBCBPB_05550;CHCLDJ_05488;CPJPGI_05432;DFFEKE_04975;DGLKOJ_05285;DMJFLM_05330;EKPLKB_05137;EMKGNF_05191;EOIIEI_04858;FIIMIJ_04890;FMDNFB_05251;FPBJNE_05336;FPPMFH_04407;GCNAEO_05346;GHEABH_04710;GOALEL_04640;HBAILA_05278;HBKCOO_05213;IBBJOJ_05470;IECKKB_05474;IILOJN_05039 | alanine/glycine:cation symporter family protein | |||
| 4 | group_5300 | gene_presence_absence | istB | group_5300 | KPN_RS03045 | none confidence | istB | IS21-like element ISKpn7 family helper ATPase IstB | KPN_RS03045 | YbdK family carboxylate-amine ligase | none | 22.68 | 1.92 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=22.68; coverage=1.92 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(633134..634249) | matched_representative_sequence=group_5300 | ACMLHL_04659;AENLJA_04786;AEOABF_05515;AHHNMN_05378;ANNNIK_04400;BEDDGA_05735;BGGBBI_03021;BLCKKP_05531;BMDOOG_04889;CBCBPB_05548;CHCLDJ_05486;CPJPGI_05430;DFFEKE_04973;DGLKOJ_05283;DMJFLM_05328;EKPLKB_05139;EMKGNF_05189;EOIIEI_04856;FIIMIJ_04892;FMDNFB_05253;FPBJNE_05334;FPPMFH_04409;GCNAEO_05348;GHEABH_04712;GOALEL_04642;HBAILA_05276;HBKCOO_05215;IBBJOJ_05468;IECKKB_05472;IILOJN_05041 | YbdK family carboxylate-amine ligase | |||
| 5 | group_4387 | gene_presence_absence | tnp | group_4387 | KPN_RS00100 | none confidence | tnp | IS21 family ISKpn7 transposase | KPN_RS00100 | ribF | bifunctional riboflavin kinase/FAD synthetase | none | 40.31 | 1.17 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.31; coverage=1.17 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | 19766..20704 | matched_representative_sequence=group_4387 | ACMLHL_04660;AENLJA_04787;AEOABF_05516;AHHNMN_05379;ANNNIK_04401;BEDDGA_05734;BGGBBI_03020;BLCKKP_05530;BMDOOG_04888;CBCBPB_05549;CHCLDJ_05487;CPJPGI_05431;DFFEKE_04974;DGLKOJ_05284;DMJFLM_05329;EKPLKB_05138;EMKGNF_05190;EOIIEI_04857;FIIMIJ_04891;FMDNFB_05252;FPBJNE_05335;FPPMFH_04408;GCNAEO_05347;GHEABH_04711;GOALEL_04641;HBAILA_05277;HBKCOO_05214;IBBJOJ_05469;IECKKB_05473;IILOJN_05040 | bifunctional riboflavin kinase/FAD synthetase | ||
| 6 | tnpR | gene_presence_absence | thrC | tnpR | KPN_RS00020 | none confidence | thrC | Tn3-like element Tn4401 family resolvase TnpR | KPN_RS00020 | thrC | threonine synthase | none | 32.30 | 0.58 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.30; coverage=0.58 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3737..5017 | matched_representative_sequence=tnpR | ACMLHL_04662;AENLJA_04789;AEOABF_05518;AHHNMN_05381;ANNNIK_04403;BEDDGA_05369;BGGBBI_03018;BLCKKP_05528;BMDOOG_04886;CBCBPB_05551;CHCLDJ_05489;CPJPGI_05433;DFFEKE_04976;DGLKOJ_05286;DMJFLM_05331;EKPLKB_05136;EMKGNF_05192;EOIIEI_04859;FIIMIJ_04889;FMDNFB_05250;FPBJNE_05337;FPPMFH_04406;GCNAEO_05345;GHEABH_04709;GOALEL_04639;HBAILA_05279;HBKCOO_05212;IBBJOJ_05471;IECKKB_05475;IILOJN_05038 | threonine synthase | ||
| 7 | group_7379 | gene_presence_absence | group_7379 | group_7379 | KPN_RS11035 | none confidence | group_7379 | Transcriptional regulator | KPN_RS11035 | winged helix-turn-helix transcriptionalregulator | none | 54.79 | 18.28 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=54.79; coverage=18.28 | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 20.5838 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2243450..2243911 | matched_representative_sequence=group_7379 | 27_refound_477_pseudo;29_refound_510_pseudo;31_refound_532_pseudo;34_refound_585_pseudo;47_refound_720_pseudo;52_refound_787_pseudo;70_refound_1043_pseudo;99_refound_1476_pseudo;AEOABF_01427;AHHNMN_04661;AHNHFK_00870;ANNNIK_00014;BEDDGA_01711;BGGBBI_02160;BLCKKP_00671;CBCBPB_03720;CHCLDJ_04823;CPJPGI_02590;DGLKOJ_00212;EKPLKB_00674;EOIIEI_01929;FIIMIJ_01513;FMDNFB_01649;FPBJNE_00845;FPPMFH_03934;GCNAEO_01540;GOALEL_01412;HBAILA_02424;HBKCOO_02444;IBBJOJ_04654 | winged helix-turn-helix transcriptionalregulator | |||
| 8 | ybcN | gene_presence_absence | fkpB | ybcN | KPN_RS00115 | none confidence | fkpB | Uncharacterized protein YbcN | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 44.59 | 1.97 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=44.59; coverage=1.97 | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 20.5838 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=ybcN | AENLJA_03560;AEOABF_00915;AHHNMN_00518;AHNHFK_01924;ANNNIK_00778;BEDDGA_00655;BGGBBI_00339;BLCKKP_04431;CBCBPB_02166;CHCLDJ_00542;CPJPGI_01560;DGLKOJ_00779;DMJFLM_01513;EKPLKB_01608;EOIIEI_01653;FIIMIJ_00381;FMDNFB_01289;FPBJNE_04642;FPPMFH_01000;GNFDFK_02141;GOALEL_04539;HBAILA_00880;HBKCOO_01422;IBBJOJ_01601;IECKKB_01063;IKDFAP_05424;JGNJAB_01570;JJNMLC_01055;JMFOKH_02187;JMKDJN_01303 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 9 | group_7316 | gene_presence_absence | rpsT | group_7316 | KPN_RS00095 | none confidence | rpsT | Colicin D immunity protein domain-containing protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 40.36 | 2.75 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.36; coverage=2.75 | 37 | 50 | 0.7400 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 19.6970 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7316 | AEOABF_05115;AHHNMN_04799;AHNHFK_05366;ANNNIK_05728;BEDDGA_05320;BLCKKP_05118;CBCBPB_05221;CHCLDJ_04971;CPJPGI_05037;DGLKOJ_05108;EKPLKB_03526;EOIIEI_05391;FIIMIJ_04948;FMDNFB_04660;FPBJNE_02811;FPPMFH_05394;GCNAEO_04949;GOALEL_04958;HBAILA_04948;HBKCOO_04854;IBBJOJ_04993;IECKKB_04999;JGNJAB_04996;JJNMLC_04691;JMFOKH_02490;KKELHE_05049;KNNKAF_04870;LEGHFF_02427;LGDJCA_02378;MDEGCH_04965 | 30S ribosomal protein S20 | ||
| 10 | group_3102 | gene_presence_absence | yiiM | group_3102 | KPN_RS22740 | none confidence | yiiM | 6-hydroxyaminopurine reductase | KPN_RS22740 | yiiM | 6-hydroxyaminopurine reductase | none | 34.78 | 2.83 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.78; coverage=2.83 | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 19.6104 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4618979..4619653 | matched_representative_sequence=group_3102 | AEOABF_00913;AHHNMN_00516;AHNHFK_01922;ANNNIK_00780;BEDDGA_00653;BGGBBI_00337;BLCKKP_04433;CBCBPB_02168;CHCLDJ_00540;CPJPGI_01562;DDIAJH_00161;DGLKOJ_00777;EEHIAL_02108;EKPLKB_01606;EOIIEI_01651;FIIMIJ_00379;FMDNFB_01287;FPBJNE_04640;FPPMFH_00998;GOALEL_04541;HBAILA_00878;HBKCOO_01424;HPFPEC_00994;IBBJOJ_01603;IECKKB_01065;IILOJN_00625;IKDFAP_05422;JGNJAB_01568;JJNMLC_01057;JMFOKH_02189 | 6-hydroxyaminopurine reductase | ||
| 11 | group_3154 | gene_presence_absence | group_3154 | group_3154 | KPN_RS21990 | none confidence | group_3154 | DUF2612 domain-containing protein | KPN_RS21990 | GNAT family N-acetyltransferase | none | 36.27 | 2.06 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=36.27; coverage=2.06 | 39 | 50 | 0.7800 | 6 | 50 | 0.1200 | cases (blaKPC positive) | 3.26 | 23.5151 | 8.205-67.39 | 8.20477 | 67.3947 | 3.76e-12 | 18.9803 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4464485..4464931 | matched_representative_sequence=group_3154 | AEOABF_05501;AHHNMN_05340;AHNHFK_05594;ANNNIK_05343;BEDDGA_05650;BGGBBI_05089;BLCKKP_05610;CHCLDJ_05458;CPJPGI_05650;DGLKOJ_05482;EKPLKB_05328;EOIIEI_05314;FIIMIJ_05628;FMDNFB_05462;FPBJNE_05361;FPPMFH_05340;GCNAEO_02625;GOALEL_05307;HBAILA_05622;HBKCOO_05468;HGIJOB_05077;IBBJOJ_05454;IECKKB_05455;IKDFAP_04684;JGNJAB_05497;JJNMLC_05401;JMFOKH_05432;KKELHE_05564;KNNKAF_05328;LBJLPI_05304 | GNAT family N-acetyltransferase | |||
| 12 | group_6321 | gene_presence_absence | group_6321 | group_6321 | KPN_RS11890 | none confidence | group_6321 | Ead/Ea22-like family protein | KPN_RS11890 | YchJ family protein | none | 25.67 | 2.96 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=25.67; coverage=2.96 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2415655..2416113 | matched_representative_sequence=group_6321 | AEOABF_00919;AHHNMN_00522;AHNHFK_01928;ANNNIK_00774;BEDDGA_00659;BGGBBI_00343;BLCKKP_04427;CBCBPB_02162;CHCLDJ_00546;CPJPGI_01556;DGLKOJ_00783;EKPLKB_01612;EOIIEI_01657;FIIMIJ_00385;FMDNFB_01293;FPBJNE_04646;FPPMFH_01004;GOALEL_04535;HBAILA_00884;HBKCOO_01418;IBBJOJ_01597;IECKKB_01059;JGNJAB_01574;JJNMLC_01051;JMFOKH_02183;KKELHE_01687;KNNKAF_00546;LBJLPI_01210;LEGHFF_04606;LGDJCA_01095 | YchJ family protein | |||
| 13 | group_6208 | gene_presence_absence | fkpB | group_6208 | KPN_RS00115 | none confidence | fkpB | HNH endonuclease | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 36.29 | 1.51 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.29; coverage=1.51 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=group_6208 | AEOABF_00911;AHHNMN_00514;AHNHFK_01920;ANNNIK_00782;BEDDGA_00651;BGGBBI_00335;BLCKKP_04435;CBCBPB_02170;CHCLDJ_00538;CPJPGI_01564;DGLKOJ_00775;EKPLKB_01604;EOIIEI_01649;FIIMIJ_00377;FMDNFB_01285;FPBJNE_04638;FPPMFH_00996;GOALEL_04543;HBAILA_00876;HBKCOO_01426;IBBJOJ_01605;IECKKB_01067;JGNJAB_01566;JJNMLC_01059;JMFOKH_02191;KKELHE_01679;KNNKAF_00538;LBJLPI_01218;LEGHFF_04598;LGDJCA_01087 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 14 | group_5736 | gene_presence_absence | group_5736 | group_5736 | KPN_RS09930 | none confidence | group_5736 | DUF551 domain-containing protein | KPN_RS09930 | LysR family transcriptional regulator | none | 32.68 | 2.47 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.68; coverage=2.47 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2032600..2033493) | matched_representative_sequence=group_5736 | AEOABF_00916;AHHNMN_00519;AHNHFK_01925;ANNNIK_00777;BEDDGA_00656;BGGBBI_00340;BLCKKP_04430;CBCBPB_02165;CHCLDJ_00543;CPJPGI_01559;DGLKOJ_00780;EKPLKB_01609;EOIIEI_01654;FIIMIJ_00382;FMDNFB_01290;FPBJNE_04643;FPPMFH_01001;GOALEL_04538;HBAILA_00881;HBKCOO_01421;IBBJOJ_01600;IECKKB_01062;JGNJAB_01571;JJNMLC_01054;JMFOKH_02186;KKELHE_01684;KNNKAF_00543;LBJLPI_01213;LEGHFF_04603;LGDJCA_01092 | LysR family transcriptional regulator | |||
| 15 | group_5471 | gene_presence_absence | lamG | group_5471 | KPN_RS00045 | none confidence | lamG | LamG domain-containing protein | KPN_RS00045 | mog | molybdopterin adenylyltransferase | none | 36.36 | 1.37 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.36; coverage=1.37 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9316..9903 | matched_representative_sequence=group_5471 | AEOABF_05604;AHHNMN_05544;AHNHFK_05703;ANNNIK_05701;BEDDGA_05752;BGGBBI_05333;BLCKKP_05753;CBCBPB_02210;CHCLDJ_05715;CPJPGI_05830;DGLKOJ_05684;EKPLKB_05438;EOIIEI_05415;FIIMIJ_05869;FMDNFB_05586;FPBJNE_05516;FPPMFH_05460;GOALEL_05406;HBAILA_05829;HBKCOO_05692;IBBJOJ_05547;IECKKB_05544;JGNJAB_05635;JJNMLC_05618;JMFOKH_05564;KKELHE_05742;KNNKAF_05545;LBJLPI_05593;LEGHFF_05520;LGDJCA_05474 | molybdopterin adenylyltransferase | ||
| 16 | group_5096 | gene_presence_absence | iclR | group_5096 | KPN_RS23680 | none confidence | iclR | Ead/Ea22-like family protein | KPN_RS23680 | iclR | glyoxylate bypass operon transcriptionalrepressor IclR | none | 32.26 | 1.78 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.26; coverage=1.78 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(4812369..4813199) | matched_representative_sequence=group_5096 | AEOABF_00917;AHHNMN_00520;AHNHFK_01926;ANNNIK_00776;BEDDGA_00657;BGGBBI_00341;BLCKKP_04429;CBCBPB_02164;CHCLDJ_00544;CPJPGI_01558;DGLKOJ_00781;EKPLKB_01610;EOIIEI_01655;FIIMIJ_00383;FMDNFB_01291;FPBJNE_04644;FPPMFH_01002;GOALEL_04537;HBAILA_00882;HBKCOO_01420;IBBJOJ_01599;IECKKB_01061;JGNJAB_01572;JJNMLC_01053;JMFOKH_02185;KKELHE_01685;KNNKAF_00544;LBJLPI_01212;LEGHFF_04604;LGDJCA_01093 | glyoxylate bypass operon transcriptionalrepressor IclR | ||
| 17 | group_3125 | gene_presence_absence | group_3125 | group_3125 | KPN_RS32615 | none confidence | group_3125 | hypothetical protein | KPN_RS32615 | hypothetical protein | none | 22.51 | 2.41 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=22.51; coverage=2.41 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(308136..308372) | matched_representative_sequence=group_3125 | AEOABF_02480;AHHNMN_02072;AHNHFK_03205;ANNNIK_05184;BEDDGA_02387;BLCKKP_02512;CHCLDJ_04601;CPJPGI_04384;DGLKOJ_03700;EKPLKB_03056;EOIIEI_03766;FIIMIJ_05299;FMDNFB_00982;FPBJNE_01692;FPPMFH_01839;GCNAEO_05125;GOALEL_02229;HBAILA_02469;HBKCOO_02015;IBBJOJ_02481;IECKKB_02021;JGNJAB_02329;JJNMLC_02821;JMFOKH_02952;KKELHE_05385;KNNKAF_02815;LBJLPI_04995;LEGHFF_01010;LGDJCA_01500;MDEGCH_03284 | hypothetical protein | |||
| 18 | pemI | gene_presence_absence | pemI | pemI | KPN_RS12945 | none confidence | pemI | type II toxin-antitoxin system antitoxin PemI | KPN_RS12945 | RpiB/LacA/LacB family sugar-phosphate isomerase | none | 34.34 | 5.81 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.34; coverage=5.81 | 0 | 50 | 0.0000 | 24 | 50 | 0.4800 | controls (blaKPC negative) | -4.54 | 0.0107092 | 0.0006262-0.1831 | 0.000626197 | 0.18315 | 4.51e-10 | 18.8908 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2627909..2628547) | matched_representative_sequence=pemI | AIJMHO_04732;BMDOOG_04810;CCKLPP_04825;DDIAJH_05414;EANECB_05558;EDGMEC_05567;FFLFOK_04625;FLEPEF_04811;HABJKE_04725;HFMEMF_05425;IKNKDK_05466;JEGCDC_05444;KAFEBA_05372;KKNIEC_05507;KLPANJ_05548;KPDGKM_05572;LBJLPI_04383;MBNFKH_05525;MJEKEA_05554;OCFBPG_05473;OCGJJJ_05632;OHBKLB_04244;PKAHKO_05512;PMCEMD_05471 | RpiB/LacA/LacB family sugar-phosphate isomerase | |||
| 19 | group_7106 | gene_presence_absence | mog | group_7106 | KPN_RS00045 | none confidence | mog | mRNA interferase | KPN_RS00045 | mog | molybdopterin adenylyltransferase | none | 40.61 | 3.00 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.61; coverage=3.00 | 0 | 50 | 0.0000 | 24 | 50 | 0.4800 | controls (blaKPC negative) | -4.54 | 0.0107092 | 0.0006262-0.1831 | 0.000626197 | 0.18315 | 4.51e-10 | 18.8908 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9316..9903 | matched_representative_sequence=group_7106 | AIJMHO_04731;BMDOOG_04809;CCKLPP_04826;DDIAJH_05413;EANECB_05557;EDGMEC_05568;FFLFOK_04624;FLEPEF_04812;HABJKE_04724;HFMEMF_05426;IKNKDK_05465;JEGCDC_05445;KAFEBA_05373;KKNIEC_05508;KLPANJ_05549;KPDGKM_05571;LBJLPI_04382;MBNFKH_05526;MJEKEA_05555;OCFBPG_05472;OCGJJJ_05633;OHBKLB_04245;PKAHKO_05513;PMCEMD_05472 | molybdopterin adenylyltransferase | ||
| 20 | group_176 | gene_presence_absence | group_176 | group_176 | KPN_RS17500 | none confidence | group_176 | Uncharacterized protein;hypothetical protein | KPN_RS17500 | sugar porter family MFS transporter | none | 99.72 | 32.63 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=99.72; coverage=32.63 | 0 | 50 | 0.0000 | 24 | 50 | 0.4800 | controls (blaKPC negative) | -4.54 | 0.0107092 | 0.0006262-0.1831 | 0.000626197 | 0.18315 | 4.51e-10 | 18.8908 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3583569..3584990) | matched_representative_sequence=group_1767 | AIJMHO_04733;BMDOOG_04811;CCKLPP_04824;DDIAJH_05415;EANECB_05559;EDGMEC_05566;FFLFOK_04626;FLEPEF_04810;HABJKE_04726;HFMEMF_05424;IKNKDK_05467;JEGCDC_05443;KAFEBA_05371;KKNIEC_05506;KLPANJ_05547;KPDGKM_05573;LBJLPI_04384;MBNFKH_05524;MJEKEA_05553;OCFBPG_05474;OCGJJJ_05631;OHBKLB_04243;PKAHKO_05511;PMCEMD_05470 | sugar porter family MFS transporter | |||
| 21 | group_3603 | gene_presence_absence | group_3603 | group_3603 | KPN_RS02695 | none confidence | group_3603 | Phage protein | KPN_RS02695 | Gfo/Idh/MocA family protein | none | 31.37 | 4.64 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.37; coverage=4.64 | 40 | 50 | 0.8000 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.2 | 22.3714 | 7.985-62.67 | 7.98541 | 62.6744 | 4.88e-12 | 18.7952 | Panaroo/Bakta+GenBank | nucleotide_similarity | 556830..557861 | matched_representative_sequence=group_3603 | AEOABF_00105;AHHNMN_00105;AHNHFK_03001;ANNNIK_02143;BEDDGA_00232;BGGBBI_03099;BLCKKP_00105;CBCBPB_05484;CHCLDJ_00105;CPJPGI_00840;DGLKOJ_01163;DMJFLM_03271;EKPLKB_05236;EOIIEI_01254;FIIMIJ_00106;FMDNFB_00108;FPBJNE_01284;FPPMFH_00633;GCNAEO_00373;GNFDFK_04180;HBAILA_03160;HBKCOO_00105;IBBJOJ_00880;IECKKB_00105;IKDFAP_03172;JGNJAB_03234;JMFOKH_01466;JMKDJN_01835;KKELHE_00800;KNNKAF_00399 | Gfo/Idh/MocA family protein | |||
| 22 | group_2991 | gene_presence_absence | rpsT | group_2991 | KPN_RS00095 | none confidence | rpsT | 30S ribosomal protein S20 | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 37.09 | 5.19 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.09; coverage=5.19 | 40 | 50 | 0.8000 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.2 | 22.3714 | 7.985-62.67 | 7.98541 | 62.6744 | 4.88e-12 | 18.7952 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_2991 | AEOABF_00096;AHHNMN_00096;AHNHFK_03010;ANNNIK_02134;BEDDGA_00241;BGGBBI_03108;BLCKKP_00096;CBCBPB_05493;CHCLDJ_00096;CPJPGI_00849;DGLKOJ_01154;DMJFLM_03278;EKPLKB_05245;EOIIEI_01263;FIIMIJ_00097;FMDNFB_00099;FPBJNE_01293;FPPMFH_00624;GCNAEO_00382;GNFDFK_04176;HBAILA_03151;HBKCOO_00096;IBBJOJ_00889;IECKKB_00096;IKDFAP_03179;JGNJAB_03243;JMFOKH_01475;JMKDJN_01842;KKELHE_00809;KNNKAF_00408 | 30S ribosomal protein S20 | ||
| 23 | group_4120 | gene_presence_absence | rpsT | group_4120 | KPN_RS00095 | none confidence | rpsT | DUF2474 domain-containing protein;hypothetical protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 41.06 | 4.23 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=41.06; coverage=4.23 | 42 | 50 | 0.8400 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.17 | 21.8421 | 7.88-60.54 | 7.88044 | 60.5395 | 5.55e-12 | 18.7047 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_4120 | AENLJA_03579;AEOABF_00927;AHHNMN_00530;AHNHFK_01936;AIJMHO_05103;ANNNIK_00766;BEDDGA_00667;BGGBBI_00351;BLCKKP_04419;CBCBPB_02154;CCKLPP_05120;CHCLDJ_00554;CPJPGI_01548;DGLKOJ_00791;EKPLKB_01620;EOIIEI_01665;FIIMIJ_00393;FLEPEF_05177;FMDNFB_01301;FPBJNE_04654;FPPMFH_01012;GNFDFK_02124;GOALEL_04527;HBAILA_00892;HBKCOO_01410;IBBJOJ_01589;IECKKB_01051;IILOJN_02200;JGNJAB_01582;JJNMLC_01043 | 30S ribosomal protein S20 | ||
| 24 | group_8717 | gene_presence_absence | dnaK | group_8717 | KPN_RS00070 | none confidence | dnaK | hypothetical protein;Bacteriophage protein;Prophage endo-N-neuraminidase | KPN_RS00070 | dnaK | molecular chaperone DnaK | none | 30.84 | 0.36 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.84; coverage=0.36 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13612..15528 | matched_representative_sequence=group_8717 | AEOABF_00872;AEOABF_05605;AHHNMN_02307;AHHNMN_05571;AHNHFK_05661;AHNHFK_05711;ANNNIK_05700;BEDDGA_00612;BEDDGA_05725;BGGBBI_05308;BLCKKP_03078;BLCKKP_04474;CBCBPB_02209_len;CHCLDJ_03125;CHCLDJ_05741;CPJPGI_01603;CPJPGI_03702;DGLKOJ_00736;DGLKOJ_05338;EKPLKB_05009;EKPLKB_05195;EOIIEI_05357;EOIIEI_05400;FIIMIJ_01901;FIIMIJ_05888;FMDNFB_05585;FPBJNE_04599;FPPMFH_00957;FPPMFH_03552;GCNAEO_02622_len | molecular chaperone DnaK | ||
| 25 | group_8318 | gene_presence_absence | budA | group_8318 | KPN_RS11095 | none confidence | budA | acetolactate decarboxylase | KPN_RS11095 | budA | acetolactate decarboxylase | none | 27.69 | 7.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.69; coverage=7.69 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2254526..2255305 | matched_representative_sequence=97_refound_1447 | 97_refound_1447;AENLJA_00541;AEOABF_00928;AHHNMN_00531;AHNHFK_01937;ANNNIK_00765;BEDDGA_00668;BGGBBI_00352;BLCKKP_04418;CBCBPB_02153;CHCLDJ_00555;CPJPGI_01547;DGLKOJ_00792;EKPLKB_01621;EOIIEI_01666;FIIMIJ_00394;FMDNFB_01302;FPBJNE_04655;FPPMFH_01013;GOALEL_04526;HBAILA_00893;HBKCOO_01409;IBBJOJ_01588;IECKKB_01050;JGNJAB_01583;JJNMLC_01042;JMFOKH_02174;KKELHE_01696;KNNKAF_00555;LBJLPI_01201 | acetolactate decarboxylase | ||
| 26 | group_7636 | gene_presence_absence | group_7636 | group_7636 | KPN_RS32305 | none confidence | group_7636 | DUF2575 domain-containing protein | KPN_RS32305 | DUF2575 domain-containing protein | none | 45.00 | 3.42 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=45.00; coverage=3.42 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | <19553..19758 | matched_representative_sequence=group_7636 | AENLJA_00543;AEOABF_00925;AHHNMN_00528;AHNHFK_01934;ANNNIK_00768;BEDDGA_00665;BGGBBI_00349;BLCKKP_04421;CBCBPB_02156;CHCLDJ_00552;CPJPGI_01550;DGLKOJ_00789;EKPLKB_01618;EOIIEI_01663;FIIMIJ_00391;FMDNFB_01299;FPBJNE_04652;FPPMFH_01010;GOALEL_04529;HBAILA_00890;HBKCOO_01412;IBBJOJ_01591;IECKKB_01053;JGNJAB_01580;JJNMLC_01045;JMFOKH_02177;JMKDJN_01315;KKELHE_01693;KNNKAF_00552;LBJLPI_01204 | DUF2575 domain-containing protein | |||
| 27 | group_6771 | gene_presence_absence | stpA | group_6771 | KPN_RS16070 | none confidence | stpA | DNA-binding protein H-NS | KPN_RS16070 | stpA | DNA-binding protein StpA | none | 36.18 | 4.20 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.18; coverage=4.20 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3298016..3298417) | matched_representative_sequence=38_refound_634 | 38_refound_634;AEOABF_05117;AHHNMN_04801;AHNHFK_05364;BEDDGA_05322;BGGBBI_05335;BLCKKP_05120;CBCBPB_05223;CHCLDJ_04969;CPJPGI_05035;DGLKOJ_05106;EKPLKB_03524;EOIIEI_05389;FIIMIJ_04950;FMDNFB_04658;FPBJNE_02813;FPPMFH_05392;GCNAEO_04951;GOALEL_04956;HBAILA_04946;HBKCOO_04856;IBBJOJ_04991;IECKKB_04997;JGNJAB_04998;JJNMLC_04689;JMFOKH_02488;KKELHE_05047;KNNKAF_04872;LEGHFF_02429;LGDJCA_02380 | DNA-binding protein StpA | ||
| 28 | group_5588 | gene_presence_absence | trpCF | group_5588 | KPN_RS06720 | none confidence | trpCF | Helix-turn-helix transcriptional regulator | KPN_RS06720 | trpCF | bifunctional indole-3-glycerol-phosphatesynthase TrpC/phosphoribosylanthranilate isomerase TrpF | none | 27.53 | 2.17 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.53; coverage=2.17 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1408179..1409537) | matched_representative_sequence=group_5588 | AENLJA_00542;AEOABF_00926;AHHNMN_00529;AHNHFK_01935;ANNNIK_00767;BEDDGA_00666;BGGBBI_00350;BLCKKP_04420;CBCBPB_02155;CHCLDJ_00553;CPJPGI_01549;DGLKOJ_00790;EKPLKB_01619;EOIIEI_01664;FIIMIJ_00392;FMDNFB_01300;FPBJNE_04653;FPPMFH_01011;GOALEL_04528;HBAILA_00891;HBKCOO_01411;IBBJOJ_01590;IECKKB_01052;JGNJAB_01581;JJNMLC_01044;JMFOKH_02176;JMKDJN_01316;KKELHE_01694;KNNKAF_00553;LBJLPI_01203 | bifunctional indole-3-glycerol-phosphatesynthase TrpC/phosphoribosylanthranilate isomerase TrpF | ||
| 29 | group_427 | gene_presence_absence | group_427 | group_427 | KPN_RS08475 | none confidence | group_427 | DMSO/selenate family reductase complex Bsubunit | KPN_RS08475 | DMSO/selenate family reductase complex Bsubunit | none | 43.77 | 2.67 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=43.77; coverage=2.67 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1755801..1756418) | matched_representative_sequence=group_4277 | AEOABF_05388;AHHNMN_02305;AHNHFK_05683;ANNNIK_05702;BEDDGA_05727;BGGBBI_05290;BLCKKP_03080;CBCBPB_02211;CHCLDJ_03123;CPJPGI_03704;DGLKOJ_05340;EKPLKB_05193;EOIIEI_05394;FIIMIJ_01903;FMDNFB_05577;FPBJNE_05285;FPPMFH_03554;GCNAEO_02620;GOALEL_03176;HBAILA_02859;HBKCOO_05264;IBBJOJ_03032;IECKKB_02499;JGNJAB_02945;JJNMLC_01638;JMFOKH_02982;KKELHE_03228;KNNKAF_05199;LBJLPI_01590;LEGHFF_03867 | DMSO/selenate family reductase complex Bsubunit | |||
| 30 | group_78 | gene_presence_absence | cspE | group_78 | KPN_RS21170 | high confidence | cspE | RNA chaperone/antiterminator CspA | KPN_RS21170 | cspE | RNA chaperone/antiterminator CspA | high | 100.00 | 100.00 | High-confidence GenBank-supported annotation. | identity=100.00; coverage=100.00 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_exact_or_contained | 4296903..4297115 | matched_representative_sequence=group_7811 | AEOABF_05116;AHHNMN_04800;AHNHFK_05365;ANNNIK_05729;BEDDGA_05321;BGGBBI_05334;BLCKKP_05119;CBCBPB_05222;CHCLDJ_04970;CPJPGI_05036;DGLKOJ_05107;EKPLKB_03525;EOIIEI_05390;FIIMIJ_04949;FMDNFB_04659;FPBJNE_02812;FPPMFH_05393;GCNAEO_04950;GOALEL_04957;HBAILA_04947;HBKCOO_04855;IBBJOJ_04992;IECKKB_04998;JGNJAB_04997;JJNMLC_04690;JMFOKH_02489;KKELHE_05048;KNNKAF_04871;LEGHFF_02428;LGDJCA_02379 | RNA chaperone/antiterminator CspA | ||
| 31 | group_8778 | gene_presence_absence | group_8778 | group_8778 | KPN_RS11565 | none confidence | group_8778 | hypothetical protein;Sugar ABC transporter substrate-binding protein | KPN_RS11565 | efflux RND transporter periplasmic adaptorsubunit | none | 31.29 | 2.96 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.29; coverage=2.96 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2350882..2351991) | matched_representative_sequence=group_8778 | AIJMHO_04709;BMDOOG_04787;CCKLPP_04848;DDIAJH_05321;EANECB_05369;EDGMEC_05412;FFLFOK_04602;FLEPEF_04834;HABJKE_04702;HFMEMF_05218;JEGCDC_05400;KAFEBA_05292;KKNIEC_05259;KLPANJ_05463;KPDGKM_05430;LBJLPI_04360;MBNFKH_05121;MJEKEA_05293;OCFBPG_05234;OCGJJJ_05499;OHBKLB_04267;PKAHKO_05133;PMCEMD_05187 | efflux RND transporter periplasmic adaptorsubunit | |||
| 32 | ant2Ia | gene_presence_absence | ant(2'')-Ia | ant2Ia | KPN_RS22165 | none confidence | ant(2'')-Ia | aminoglycoside nucleotidyltransferase ANT(2'')-Ia | KPN_RS22165 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 23.25 | 2.31 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=23.25; coverage=2.31 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4499853..4501217 | matched_representative_sequence=ant2Ia | AIJMHO_05590;BEDDGA_05742;BMDOOG_05376;CCKLPP_05407;EANECB_05555;EDGMEC_05562;FFLFOK_04556;FLEPEF_05505;HABJKE_04656;HFMEMF_05316;JEGCDC_05569;KAFEBA_05377;KKNIEC_05368;KLPANJ_05500;KPDGKM_05569;LBJLPI_05494;MBNFKH_05530;MJEKEA_05549;OCGJJJ_05698;OHBKLB_04313;PKAHKO_05307;PMCEMD_05346;PMCNJE_05901 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 33 | group_7834 | gene_presence_absence | rpsT | group_7834 | KPN_RS00095 | none confidence | rpsT | Phage protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 48.52 | 3.81 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=48.52; coverage=3.81 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7834 | AIJMHO_04727;BMDOOG_04805;CCKLPP_04830;DDIAJH_05339;EANECB_05351;EDGMEC_05394;FFLFOK_04620;FLEPEF_04816;HABJKE_04720;HFMEMF_05200;JEGCDC_05382;KAFEBA_05274;KKNIEC_05277;KLPANJ_05445;KPDGKM_05448;LBJLPI_04378;MBNFKH_05103;MJEKEA_05275;OCFBPG_05216;OCGJJJ_05517;OHBKLB_04249;PKAHKO_05151;PMCEMD_05205 | 30S ribosomal protein S20 | ||
| 34 | group_7768 | gene_presence_absence | rpsT | group_7768 | KPN_RS00095 | none confidence | rpsT | Inner membrane protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 42.24 | 3.20 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.24; coverage=3.20 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7768 | AIJMHO_04726;BMDOOG_04804;CCKLPP_04831;DDIAJH_05338;EANECB_05352;EDGMEC_05395;FFLFOK_04619;FLEPEF_04817;HABJKE_04719;HFMEMF_05201;JEGCDC_05383;KAFEBA_05275;KKNIEC_05276;KLPANJ_05446;KPDGKM_05447;LBJLPI_04377;MBNFKH_05104;MJEKEA_05276;OCFBPG_05217;OCGJJJ_05516;OHBKLB_04250;PKAHKO_05150;PMCEMD_05204 | 30S ribosomal protein S20 | ||
| 35 | group_7559 | gene_presence_absence | nfuA | group_7559 | KPN_RS20445 | none confidence | nfuA | HTH cro/C1-type domain-containing protein | KPN_RS20445 | nfuA | Fe-S biogenesis protein NfuA | none | 30.30 | 6.43 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.30; coverage=6.43 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4129821..4130396 | matched_representative_sequence=group_7559 | AIJMHO_04717;BMDOOG_04795;CCKLPP_04840;DDIAJH_05329;EANECB_05361;EDGMEC_05404;FFLFOK_04610;FLEPEF_04826;HABJKE_04710;HFMEMF_05210;JEGCDC_05392;KAFEBA_05284;KKNIEC_05267;KLPANJ_05455;KPDGKM_05438;LBJLPI_04368;MBNFKH_05113;MJEKEA_05285;OCFBPG_05226;OCGJJJ_05507;OHBKLB_04259;PKAHKO_05141;PMCEMD_05195 | Fe-S biogenesis protein NfuA | ||
| 36 | group_6627 | gene_presence_absence | impA | group_6627 | KPN_RS06330 | none confidence | impA | Protein impA | KPN_RS06330 | translesion error-prone DNA polymerase Vautoproteolytic subunit | none | 46.55 | 4.14 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.55; coverage=4.14 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1332862..1333281 | matched_representative_sequence=group_6627 | AIJMHO_04730;BMDOOG_04808;CCKLPP_04827;DDIAJH_05341;EANECB_05349;EDGMEC_05392;FFLFOK_04623;FLEPEF_04813;HABJKE_04723;HFMEMF_05198;JEGCDC_05380;KAFEBA_05272;KKNIEC_05279;KLPANJ_05443;KPDGKM_05450;LBJLPI_04381;MBNFKH_05101;MJEKEA_05273;OCFBPG_05214;OCGJJJ_05519;OHBKLB_04246;PKAHKO_05153;PMCEMD_05207 | translesion error-prone DNA polymerase Vautoproteolytic subunit | |||
| 37 | group_6436 | gene_presence_absence | ampE | group_6436 | KPN_RS00605 | none confidence | ampE | XRE family transcriptional regulator | KPN_RS00605 | ampE | beta-lactamase regulator AmpE | none | 35.81 | 3.33 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.81; coverage=3.33 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 131116..131970 | matched_representative_sequence=group_6436 | AIJMHO_04708;BMDOOG_04786;CCKLPP_04849;DDIAJH_05320;EANECB_05370;EDGMEC_05413;FFLFOK_04601;FLEPEF_04835;HABJKE_04701;HFMEMF_05219;JEGCDC_05401;KAFEBA_05293;KKNIEC_05258;KLPANJ_05464;KPDGKM_05429;LBJLPI_04359;MBNFKH_05122;MJEKEA_05294;OCFBPG_05235;OCGJJJ_05498;OHBKLB_04268;PKAHKO_05132;PMCEMD_05186 | beta-lactamase regulator AmpE | ||
| 38 | group_6063 | gene_presence_absence | norR | group_6063 | KPN_RS16320 | none confidence | norR | phospholipase D | KPN_RS16320 | norR | nitric oxide reductase transcriptional regulatorNorR | none | 22.03 | 2.84 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=22.03; coverage=2.84 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3337673..3339223) | matched_representative_sequence=group_6063 | AIJMHO_04710;BMDOOG_04788;CCKLPP_04847;DDIAJH_05322;EANECB_05368;EDGMEC_05411;FFLFOK_04603;FLEPEF_04833;HABJKE_04703;HFMEMF_05217;JEGCDC_05399;KAFEBA_05291;KKNIEC_05260;KLPANJ_05462;KPDGKM_05431;LBJLPI_04361;MBNFKH_05120;MJEKEA_05292;OCFBPG_05233;OCGJJJ_05500;OHBKLB_04266;PKAHKO_05134;PMCEMD_05188 | nitric oxide reductase transcriptional regulatorNorR | ||
| 39 | group_5969 | gene_presence_absence | gldA | group_5969 | KPN_RS22860 | none confidence | gldA | Restriction endonuclease type IV Mrr domain-containing protein | KPN_RS22860 | gldA | bifunctional L-1,2-propanedioldehydrogenase/glycerol dehydrogenase | none | 18.09 | 2.55 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=18.09; coverage=2.55 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(4643861..4644964) | matched_representative_sequence=group_5969 | AIJMHO_04716;BMDOOG_04794;CCKLPP_04841;DDIAJH_05328;EANECB_05362;EDGMEC_05405;FFLFOK_04609;FLEPEF_04827;HABJKE_04709;HFMEMF_05211;JEGCDC_05393;KAFEBA_05285;KKNIEC_05266;KLPANJ_05456;KPDGKM_05437;LBJLPI_04367;MBNFKH_05114;MJEKEA_05286;OCFBPG_05227;OCGJJJ_05506;OHBKLB_04260;PKAHKO_05140;PMCEMD_05194 | bifunctional L-1,2-propanedioldehydrogenase/glycerol dehydrogenase | ||
| 40 | tgtA5 | gene_presence_absence | tgtA5 | tgtA5 | KPN_RS10985 | none confidence | tgtA5 | TgtA5 cluster protein 2 | KPN_RS10985 | ABC transporter ATP-binding protein | none | 34.72 | 2.34 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.72; coverage=2.34 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2234528..2235358 | matched_representative_sequence=tgtA5 | AIJMHO_04725;BMDOOG_04803;CCKLPP_04832;DDIAJH_05337;EANECB_05353;EDGMEC_05396;FFLFOK_04618;FLEPEF_04818;HABJKE_04718;HFMEMF_05202;JEGCDC_05384;KAFEBA_05276;KKNIEC_05275;KLPANJ_05447;KPDGKM_05446;LBJLPI_04376;MBNFKH_05105;MJEKEA_05277;OCFBPG_05218;OCGJJJ_05515;OHBKLB_04251;PKAHKO_05149;PMCEMD_05203 | ABC transporter ATP-binding protein | |||
| 41 | group_5441 | gene_presence_absence | ldtA | group_5441 | KPN_RS13125 | none confidence | ldtA | Tyr recombinase domain-containing protein | KPN_RS13125 | ldtA | L,D-transpeptidase | none | 40.64 | 2.02 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.64; coverage=2.02 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2657066..2658007) | matched_representative_sequence=group_5441 | AIJMHO_04713;BMDOOG_04791;CCKLPP_04844;DDIAJH_05325;EANECB_05365;EDGMEC_05408;FFLFOK_04606;FLEPEF_04830;HABJKE_04706;HFMEMF_05214;JEGCDC_05396;KAFEBA_05288;KKNIEC_05263;KLPANJ_05459;KPDGKM_05434;LBJLPI_04364;MBNFKH_05117;MJEKEA_05289;OCFBPG_05230;OCGJJJ_05503;OHBKLB_04263;PKAHKO_05137;PMCEMD_05191 | L,D-transpeptidase | ||
| 42 | group_4642 | gene_presence_absence | parA | group_4642 | KPN_RS11685 | none confidence | parA | ParA | KPN_RS11685 | MetQ/NlpA family ABC transportersubstrate-binding protein | none | 34.12 | 1.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.12; coverage=1.54 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2376466..2377266 | matched_representative_sequence=group_4642 | AIJMHO_04712;BMDOOG_04790;CCKLPP_04845;DDIAJH_05324;EANECB_05366;EDGMEC_05409;FFLFOK_04605;FLEPEF_04831;HABJKE_04705;HFMEMF_05215;JEGCDC_05397;KAFEBA_05289;KKNIEC_05262;KLPANJ_05460;KPDGKM_05433;LBJLPI_04363;MBNFKH_05118;MJEKEA_05290;OCFBPG_05231;OCGJJJ_05502;OHBKLB_04264;PKAHKO_05136;PMCEMD_05190 | MetQ/NlpA family ABC transportersubstrate-binding protein | |||
| 43 | group_4043 | gene_presence_absence | rplY | group_4043 | KPN_RS14070 | none confidence | rplY | 50S ribosomal protein L25 | KPN_RS14070 | rplY | 50S ribosomal protein L25 | none | 27.59 | 2.56 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.59; coverage=2.56 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2875961..2876245 | matched_representative_sequence=group_4043 | AIJMHO_04721;BMDOOG_04799;CCKLPP_04836;DDIAJH_05332;EANECB_05358;EDGMEC_05401;FFLFOK_04614;FLEPEF_04822;HABJKE_04714;HFMEMF_05207;JEGCDC_05389;KAFEBA_05281;KKNIEC_05270;KLPANJ_05452;KPDGKM_05441;LBJLPI_04372;MBNFKH_05110;MJEKEA_05282;OCFBPG_05223;OCGJJJ_05510;OHBKLB_04255;PKAHKO_05144;PMCEMD_05198 | 50S ribosomal protein L25 | ||
| 44 | group_3529 | gene_presence_absence | group_3529 | group_3529 | KPN_RS16055 | none confidence | group_3529 | rhodanese family protein | KPN_RS16055 | rhodanese family protein | none | 34.55 | 4.20 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.55; coverage=4.20 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3296130..3296675 | matched_representative_sequence=group_3529 | AIJMHO_04722;BMDOOG_04800;CCKLPP_04835;DDIAJH_05334;EANECB_05356;EDGMEC_05399;FFLFOK_04615;FLEPEF_04821;HABJKE_04715;HFMEMF_05205;JEGCDC_05387;KAFEBA_05279;KKNIEC_05272;KLPANJ_05450;KPDGKM_05443;LBJLPI_04373;MBNFKH_05108;MJEKEA_05280;OCFBPG_05221;OCGJJJ_05512;OHBKLB_04254;PKAHKO_05146;PMCEMD_05200 | rhodanese family protein | |||
| 45 | relB | gene_presence_absence | dcuR | relB | KPN_RS08320 | none confidence | dcuR | RelB antitoxin | KPN_RS08320 | dcuR | two-component system response regulator DcuR | none | 28.67 | 1.25 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=28.67; coverage=1.25 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1725525..1726244) | matched_representative_sequence=relB | AIJMHO_04723;BMDOOG_04801;CCKLPP_04834;DDIAJH_05335;EANECB_05355;EDGMEC_05398;FFLFOK_04616;FLEPEF_04820;HABJKE_04716;HFMEMF_05204;JEGCDC_05386;KAFEBA_05278;KKNIEC_05273;KLPANJ_05449;KPDGKM_05444;LBJLPI_04374;MBNFKH_05107;MJEKEA_05279;OCFBPG_05220;OCGJJJ_05513;OHBKLB_04253;PKAHKO_05147;PMCEMD_05201 | two-component system response regulator DcuR | ||
| 46 | group_2511 | gene_presence_absence | fkpB | group_2511 | KPN_RS00115 | none confidence | fkpB | HNH endonuclease | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 39.96 | 1.65 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=39.96; coverage=1.65 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=group_2511 | AIJMHO_04719;BMDOOG_04797;CCKLPP_04838;DDIAJH_05331;EANECB_05359;EDGMEC_05402;FFLFOK_04612;FLEPEF_04824;HABJKE_04712;HFMEMF_05208;JEGCDC_05390;KAFEBA_05282;KKNIEC_05269;KLPANJ_05453;KPDGKM_05440;LBJLPI_04370;MBNFKH_05111;MJEKEA_05283;OCFBPG_05224;OCGJJJ_05509;OHBKLB_04257;PKAHKO_05143;PMCEMD_05197 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 47 | group_1719 | gene_presence_absence | group_1719 | group_1719 | KPN_RS24265 | none confidence | group_1719 | alpha-glucosidase/alpha-galactosidase | KPN_RS24265 | alpha-glucosidase/alpha-galactosidase | none | 12.83 | 3.50 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=12.83; coverage=3.50 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4930190..4931542 | matched_representative_sequence=group_1719 | AIJMHO_04715;BMDOOG_04793;CCKLPP_04842;DDIAJH_05327;EANECB_05363;EDGMEC_05406;FFLFOK_04608;FLEPEF_04828;HABJKE_04708;HFMEMF_05212;JEGCDC_05394;KAFEBA_05286;KKNIEC_05265;KLPANJ_05457;KPDGKM_05436;LBJLPI_04366;MBNFKH_05115;MJEKEA_05287;OCFBPG_05228;OCGJJJ_05505;OHBKLB_04261;PKAHKO_05139;PMCEMD_05193 | alpha-glucosidase/alpha-galactosidase | |||
| 48 | group_1608 | gene_presence_absence | rpsT | group_1608 | KPN_RS00095 | none confidence | rpsT | Helix-turn-helix transcriptional regulator | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 54.75 | 2.93 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=54.75; coverage=2.93 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_1608 | AIJMHO_04724;BMDOOG_04802;CCKLPP_04833;DDIAJH_05336;EANECB_05354;EDGMEC_05397;FFLFOK_04617;FLEPEF_04819;HABJKE_04717;HFMEMF_05203;JEGCDC_05385;KAFEBA_05277;KKNIEC_05274;KLPANJ_05448;KPDGKM_05445;LBJLPI_04375;MBNFKH_05106;MJEKEA_05278;OCFBPG_05219;OCGJJJ_05514;OHBKLB_04252;PKAHKO_05148;PMCEMD_05202 | 30S ribosomal protein S20 | ||
| 49 | group_1541 | gene_presence_absence | group_1541 | group_1541 | KPN_RS05655 | none confidence | group_1541 | phosphatase | KPN_RS05655 | phosphatase | none | 23.30 | 6.02 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=23.30; coverage=6.02 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1207081..1207818 | matched_representative_sequence=group_1541 | AIJMHO_04714;BMDOOG_04792;CCKLPP_04843;DDIAJH_05326;EANECB_05364;EDGMEC_05407;FFLFOK_04607;FLEPEF_04829;HABJKE_04707;HFMEMF_05213;JEGCDC_05395;KAFEBA_05287;KKNIEC_05264;KLPANJ_05458;KPDGKM_05435;LBJLPI_04365;MBNFKH_05116;MJEKEA_05288;OCFBPG_05229;OCGJJJ_05504;OHBKLB_04262;PKAHKO_05138;PMCEMD_05192 | phosphatase | |||
| 50 | group_1190 | gene_presence_absence | group_1190 | group_1190 | KPN_RS11085 | none confidence | group_1190 | Plasmid stability family protein | KPN_RS11085 | 3-hydroxybutyrate dehydrogenase | none | 17.28 | 3.38 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=17.28; coverage=3.38 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2252757..2253527 | matched_representative_sequence=group_1190 | AIJMHO_04711;BMDOOG_04789;CCKLPP_04846;DDIAJH_05323;EANECB_05367;EDGMEC_05410;FFLFOK_04604;FLEPEF_04832;HABJKE_04704;HFMEMF_05216;JEGCDC_05398;KAFEBA_05290;KKNIEC_05261;KLPANJ_05461;KPDGKM_05432;LBJLPI_04362;MBNFKH_05119;MJEKEA_05291;OCFBPG_05232;OCGJJJ_05501;OHBKLB_04265;PKAHKO_05135;PMCEMD_05189 | 3-hydroxybutyrate dehydrogenase | |||
| 51 | umuC | gene_presence_absence | umuC; | umuC | KPN_RS00060 | none confidence | umuC; | DNA polymerase V subunit UmuC;DNA polymerase IV | KPN_RS00060 | msyB | acidic protein MsyB | none | 32.12 | 0.77 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.12; coverage=0.77 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12045..12794) | matched_representative_sequence=umuC | AIJMHO_04728;AIJMHO_04729;BMDOOG_04806;BMDOOG_04807;CCKLPP_04828;CCKLPP_04829;DDIAJH_05340;EANECB_05350;EDGMEC_05393;FFLFOK_04621;FFLFOK_04622;FLEPEF_04814;FLEPEF_04815;HABJKE_04721;HABJKE_04722;HFMEMF_05199;JEGCDC_05381;KAFEBA_05273;KKNIEC_05278;KLPANJ_05444;KPDGKM_05449;LBJLPI_04379;LBJLPI_04380;MBNFKH_05102;MJEKEA_05274;OCFBPG_05215;OCGJJJ_05518;OHBKLB_04247;OHBKLB_04248;PKAHKO_05152 | acidic protein MsyB | ||
| 52 | group_179 | gene_presence_absence | group_179 | group_179 | KPN_RS03200 | none confidence | group_179 | Asparaginyl-tRNA synthetase | KPN_RS03200 | L-fucose/L-arabinose isomerase family protein | none | 97.32 | 12.83 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=97.32; coverage=12.83 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(668542..669960) | matched_representative_sequence=group_1791 | AIJMHO_04718;BMDOOG_04796;CCKLPP_04839;DDIAJH_05330;EANECB_05360;EDGMEC_05403;FFLFOK_04611;FLEPEF_04825;HABJKE_04711;HFMEMF_05209;JEGCDC_05391;KAFEBA_05283;KKNIEC_05268;KLPANJ_05454;KPDGKM_05439;LBJLPI_04369;MBNFKH_05112;MJEKEA_05284;OCFBPG_05225;OCGJJJ_05508;OHBKLB_04258;PKAHKO_05142;PMCEMD_05196 | L-fucose/L-arabinose isomerase family protein | |||
| 53 | group_26 | gene_presence_absence | KPN_RS10465-like (group_26) | group_26 | KPN_RS10465 | medium confidence | group_26 | Lipoprotein | KPN_RS10465 | glucan biosynthesis protein D | medium | 94.49 | 71.33 | Medium-confidence locus-level GenBank rescue. | identity=94.49; coverage=71.33 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2139574..2141229) | matched_representative_sequence=group_2670 | AIJMHO_04707;BMDOOG_04785;CCKLPP_04850;DDIAJH_05319;EANECB_05371;EDGMEC_05414;FFLFOK_04600;FLEPEF_04836;HABJKE_04700;HFMEMF_05220;JEGCDC_05402;KAFEBA_05294;KKNIEC_05257;KLPANJ_05465;KPDGKM_05428;LBJLPI_04358;MBNFKH_05123;MJEKEA_05295;OCFBPG_05236;OCGJJJ_05497;OHBKLB_04269;PKAHKO_05131;PMCEMD_05185 | glucan biosynthesis protein D | |||
| 54 | pilS | gene_presence_absence | satP | pilS | KPN_RS00055 | none confidence | satP | Type 4 secretion system PilS N-terminal domain-containing protein | KPN_RS00055 | satP | acetate uptake transporter | none | 35.53 | 1.40 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.53; coverage=1.40 | 35 | 50 | 0.7000 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.29 | 23.6667 | 7.593-73.77 | 7.59315 | 73.7654 | 2.2e-11 | 18.2224 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(11390..11956) | matched_representative_sequence=pilS | AEOABF_02510;AHHNMN_04813;AHNHFK_05232;BEDDGA_05335;BLCKKP_05132;CHCLDJ_04956;CPJPGI_05023;DGLKOJ_03405;EKPLKB_03512;EOIIEI_04976;FIIMIJ_04963;FMDNFB_04646;FPBJNE_02825;FPPMFH_03434;GCNAEO_05658;GOALEL_04944;HBAILA_04933;HBKCOO_04868;IBBJOJ_04979;IECKKB_04985;JGNJAB_05011;JJNMLC_04677;JMFOKH_02475;KKELHE_05035;KNNKAF_04884;LEGHFF_02441;LGDJCA_02392;MDEGCH_05363;MGKJKL_05105;MKNMNF_02208 | acetate uptake transporter | ||
| 55 | group_4750 | gene_presence_absence | group_4750 | group_4750 | KPN_RS32350 | none confidence | group_4750 | hypothetical protein | KPN_RS32350 | hypothetical protein | none | 17.97 | 1.59 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=17.97; coverage=1.59 | 35 | 50 | 0.7000 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.29 | 23.6667 | 7.593-73.77 | 7.59315 | 73.7654 | 2.2e-11 | 18.2224 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1328981..1329137) | matched_representative_sequence=group_4750 | 0_refound_0_pseudo;38_refound_635_pseudo;AEOABF_02507;AHHNMN_02099;BLCKKP_02485;CHCLDJ_04628;CPJPGI_04357;DGLKOJ_03727;EKPLKB_03083;EOIIEI_03792;FIIMIJ_05272;FMDNFB_00955;FPBJNE_01719;GCNAEO_05152;GOALEL_05348;HBAILA_02442;HBKCOO_01988;IBBJOJ_02454;IECKKB_01994;JGNJAB_02302;JJNMLC_05502;JMFOKH_02979;KKELHE_05412;KNNKAF_02842;LBJLPI_04968;LEGHFF_01037;LGDJCA_01527;MDEGCH_03311;MGKJKL_02615;MKNMNF_01619 | hypothetical protein | |||
| 56 | tacA2 | gene_presence_absence | alkA | tacA2 | KPN_RS13555 | none confidence | alkA | Antitoxin TacA2 | KPN_RS13555 | alkA | DNA-3-methyladenine glycosylase 2 | none | 33.42 | 5.10 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.42; coverage=5.10 | 44 | 50 | 0.8800 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2754736..2755584) | matched_representative_sequence=tacA2 | AENLJA_04546;AEOABF_00608;AHHNMN_01121;AHNHFK_00292;ANNNIK_01117;BEDDGA_04393;BGGBBI_05301;BLCKKP_02064;CBCBPB_02318;CEPDLH_01633;CHCLDJ_01670;CPJPGI_00269;DFFEKE_03143;DGLKOJ_01612;EKPLKB_01303;EOIIEI_00776;FFLFOK_02961;FIIMIJ_00744;FMDNFB_00664;FPBJNE_00062;FPPMFH_00264;GCNAEO_00665;GOALEL_00292;HABJKE_03108;HBAILA_00269;HBKCOO_00853;IBBJOJ_00268;IECKKB_01142;IKDFAP_04084;JAIKEL_05034 | DNA-3-methyladenine glycosylase 2 | ||
| 57 | group_6402 | gene_presence_absence | mog | group_6402 | KPN_RS00045 | none confidence | mog | tRNA-acetylating toxin 2 | KPN_RS00045 | mog | molybdopterin adenylyltransferase | none | 43.58 | 2.26 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=43.58; coverage=2.26 | 44 | 50 | 0.8800 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9316..9903 | matched_representative_sequence=group_6402 | AENLJA_04545;AEOABF_00607;AHHNMN_01120;AHNHFK_00293;ANNNIK_01118;BEDDGA_04392;BGGBBI_05302;BLCKKP_02065;CBCBPB_02319;CEPDLH_01632;CHCLDJ_01669;CPJPGI_00268;DFFEKE_03142;DGLKOJ_01613;EKPLKB_01302;EOIIEI_00775;FFLFOK_02960;FIIMIJ_00745;FMDNFB_00663;FPBJNE_00063;FPPMFH_00263;GCNAEO_00664;GOALEL_00293;HABJKE_03107;HBAILA_00268;HBKCOO_00854;IBBJOJ_00267;IECKKB_01141;IKDFAP_04085;JAIKEL_05033 | molybdopterin adenylyltransferase | ||
| 58 | group_8439 | gene_presence_absence | group_8439 | group_8439 | KPN_RS00050 | none confidence | group_8439 | hypothetical protein;Lipoprotein | KPN_RS00050 | MFS transporter | none | 37.12 | 1.33 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.12; coverage=1.33 | 38 | 50 | 0.7600 | 6 | 50 | 0.1200 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | 10023..11327 | matched_representative_sequence=group_8439 | AEOABF_02495;AHHNMN_02087;AHNHFK_03220;ANNNIK_05488;BEDDGA_02372;BGGBBI_05036;BLCKKP_02497;CBCBPB_05393;CHCLDJ_04616;CPJPGI_04369;DGLKOJ_03715;DMJFLM_00725;EKPLKB_03071;EOIIEI_03781;FIIMIJ_05284;FMDNFB_00967;FPBJNE_01707;FPPMFH_01824;GCNAEO_05140;GOALEL_05250;HBAILA_02454;HBKCOO_02000;IBBJOJ_02466;IECKKB_02006;JGNJAB_02314;JJNMLC_02806;JMFOKH_02967;KKELHE_05400;KNNKAF_02830;LBJLPI_04980 | MFS transporter | |||
| 59 | group_5954 | gene_presence_absence | group_5954 | group_5954 | KPN_RS23565 | none confidence | group_5954 | Rsd/AlgQ family anti-sigma factor | KPN_RS23565 | Rsd/AlgQ family anti-sigma factor | none | 32.23 | 2.69 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.23; coverage=2.69 | 38 | 50 | 0.7600 | 6 | 50 | 0.1200 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(4788464..4788961) | matched_representative_sequence=group_5954 | 33_refound_555_pseudo;AEOABF_04638;AHHNMN_04960;AHNHFK_03434;ANNNIK_02023;BEDDGA_04239;BGGBBI_02071;BLCKKP_01181;CBCBPB_01040;CHCLDJ_05182;CPJPGI_00959;DGLKOJ_00722;EKPLKB_04153;EOIIEI_00751;FIIMIJ_01025;FMDNFB_03542;FPBJNE_02019;FPPMFH_03169;GCNAEO_02953;GOALEL_01627;HBAILA_00860;HBKCOO_00492;IBBJOJ_01284;IECKKB_00746;JGNJAB_00919;JJNMLC_01387;JMFOKH_01585;KKELHE_01340;KNNKAF_05084;LBJLPI_02293 | Rsd/AlgQ family anti-sigma factor | |||
| 60 | group_3166 | gene_presence_absence | srlA | group_3166 | KPN_RS15830 | none confidence | srlA | Transcriptional regulator | KPN_RS15830 | srlA | PTS glucitol/sorbitol transporter subunit IIC | none | 27.42 | 6.76 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.42; coverage=6.76 | 43 | 50 | 0.8600 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3243459..3243980 | matched_representative_sequence=23_refound_439 | 23_refound_439;ACMLHL_00640;AENLJA_00544;AEOABF_00924;AHHNMN_00527;AHNHFK_01933;ANNNIK_00769;BEDDGA_00664;BGGBBI_00348;BLCKKP_04422;BMDOOG_05170;CBCBPB_02157;CHCLDJ_00551;CPJPGI_01551;DDIAJH_00175;DGLKOJ_00788;DMJFLM_01502;EEHIAL_02096;EKPLKB_01617;EOIIEI_01662;FIIMIJ_00390;FMDNFB_01298;FPBJNE_04651;FPPMFH_01009;GNFDFK_02128;GOALEL_04530;HBAILA_00889;HBKCOO_01413;HPFPEC_00982;IBBJOJ_01592 | PTS glucitol/sorbitol transporter subunit IIC | ||
| 61 | group_7989 | gene_presence_absence | cueR | group_7989 | KPN_RS02475 | none confidence | cueR | Cu(I)-responsive transcriptional regulator | KPN_RS02475 | cueR | Cu(I)-responsive transcriptional regulator | none | 38.33 | 9.52 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.33; coverage=9.52 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 513976..514386 | matched_representative_sequence=group_7989 | AEOABF_02497;AHHNMN_02089;AHNHFK_03222;ANNNIK_05490;BEDDGA_05690;BGGBBI_05038;BLCKKP_02495;CBCBPB_05395;CHCLDJ_04618;CPJPGI_04367;DGLKOJ_03717;DMJFLM_00723;EKPLKB_03073;EOIIEI_03783;FIIMIJ_05282;FMDNFB_00965;FPBJNE_01709;FPPMFH_01822;GCNAEO_05142;GHEABH_04194;GOALEL_05248;HBAILA_02452;HBKCOO_01998;IBBJOJ_02464;IECKKB_02004;JGNJAB_02312;JJNMLC_02804;JMFOKH_02969;KKELHE_05402;KNNKAF_02832 | Cu(I)-responsive transcriptional regulator | ||
| 62 | group_7831 | gene_presence_absence | dnaQ | group_7831 | KPN_RS01225 | none confidence | dnaQ | Excisionase | KPN_RS01225 | dnaQ | DNA polymerase III subunit epsilon | none | 8.28 | 7.14 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=8.28; coverage=7.14 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 263239..263970 | matched_representative_sequence=group_7831 | AEOABF_00092;AHHNMN_00092;AHNHFK_03014;ANNNIK_02130;BEDDGA_00245;BGGBBI_03112;BLCKKP_00092;CBCBPB_05497;CHCLDJ_00092;CPJPGI_00853;DGLKOJ_01150;DMJFLM_03282;EKPLKB_05249;EOIIEI_01267;FIIMIJ_00093;FMDNFB_00095;FPBJNE_01297;FPPMFH_00620;GCNAEO_00386;HBAILA_03147;HBKCOO_00092;IBBJOJ_00893;IECKKB_00092;IKDFAP_03183;JGNJAB_03247;JMFOKH_01479;JMKDJN_01846;KKELHE_00813;KNNKAF_00412;LBJLPI_05360 | DNA polymerase III subunit epsilon | ||
| 63 | group_5340 | gene_presence_absence | dnaT | group_5340 | KPN_RS25960 | high confidence | dnaT | DnaT DNA-binding domain-containing protein | KPN_RS25960 | dnaT | primosomal protein DnaT | high | 100.0 | 100.0 | High-confidence GenBank-supported annotation. | identity=100.0; coverage=100.0 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | qualifier_exact | complement(5272196..5272735) | AEOABF_00093;AHHNMN_00093;AHNHFK_03013;ANNNIK_02131;BEDDGA_00244;BGGBBI_03111;BLCKKP_00093;CBCBPB_05496;CHCLDJ_00093;CPJPGI_00852;DGLKOJ_01151;DMJFLM_03281;EKPLKB_05248;EOIIEI_01266;FIIMIJ_00094;FMDNFB_00096;FPBJNE_01296;FPPMFH_00621;GCNAEO_00385;HBAILA_03148;HBKCOO_00093;IBBJOJ_00892;IECKKB_00093;IKDFAP_03182;JGNJAB_03246;JMFOKH_01478;JMKDJN_01845;KKELHE_00812;KNNKAF_00411;LBJLPI_05359 | primosomal protein DnaT | |||
| 64 | group_5272 | gene_presence_absence | group_5272 | group_5272 | KPN_RS07845 | none confidence | group_5272 | Replication protein | KPN_RS07845 | RidA family protein | none | 28.83 | 1.91 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=28.83; coverage=1.91 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1624270..1624704 | matched_representative_sequence=group_5272 | AEOABF_00094;AHHNMN_00094;AHNHFK_03012;ANNNIK_02132;BEDDGA_00243;BGGBBI_03110;BLCKKP_00094;CBCBPB_05495;CHCLDJ_00094;CPJPGI_00851;DGLKOJ_01152;DMJFLM_03280;EKPLKB_05247;EOIIEI_01265;FIIMIJ_00095;FMDNFB_00097;FPBJNE_01295;FPPMFH_00622;GCNAEO_00384;HBAILA_03149;HBKCOO_00094;IBBJOJ_00891;IECKKB_00094;IKDFAP_03181;JGNJAB_03245;JMFOKH_01477;JMKDJN_01844;KKELHE_00811;KNNKAF_00410;LBJLPI_05358 | RidA family protein | |||
| 65 | group_3204 | gene_presence_absence | prmB | group_3204 | KPN_RS14595 | none confidence | prmB | LF-82 | KPN_RS14595 | prmB | 50S ribosomal protein L3 N(5)-glutaminemethyltransferase | none | 21.16 | 5.81 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=21.16; coverage=5.81 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2990106..2991038) | matched_representative_sequence=group_3204 | AEOABF_00106;AHHNMN_00106;AHNHFK_03000;ANNNIK_02144;BEDDGA_00231;BGGBBI_03098;BLCKKP_00106;CBCBPB_05483;CHCLDJ_00106;CPJPGI_00839;DGLKOJ_01164;DMJFLM_03270;EKPLKB_05146;EOIIEI_01253;FIIMIJ_00107;FMDNFB_00109;FPBJNE_01283;FPPMFH_00634;GCNAEO_00372;HBAILA_03161;HBKCOO_00106;IBBJOJ_00879;IECKKB_00106;IKDFAP_03171;JGNJAB_03233;JMFOKH_01465;JMKDJN_01834;KKELHE_00799;KNNKAF_00398;LBJLPI_05346 | 50S ribosomal protein L3 N(5)-glutaminemethyltransferase | ||
| 66 | group_2450 | gene_presence_absence | group_2450 | group_2450 | KPN_RS18675 | none confidence | group_2450 | phage tail protein | KPN_RS18675 | phage tail protein | none | 38.29 | 2.12 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.29; coverage=2.12 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3810023..3811180) | matched_representative_sequence=group_2450 | AEOABF_02472;AHHNMN_02064;AHNHFK_03197;ANNNIK_02477;BEDDGA_02395;BGGBBI_03230;BLCKKP_02520;CBCBPB_05615;CHCLDJ_04593;CPJPGI_04392;DGLKOJ_03692;EKPLKB_03048;EOIIEI_03758;FIIMIJ_02283;FMDNFB_00990;FPBJNE_01684;FPPMFH_01847;GCNAEO_04400;GOALEL_02221;HBAILA_02477;HBKCOO_02023;IBBJOJ_02489;IECKKB_02029;IKDFAP_04813;JGNJAB_02337;JJNMLC_02829;JMFOKH_02944;JMKDJN_00225;KKELHE_02908;KNNKAF_02807 | phage tail protein | |||
| 67 | dinI | gene_presence_absence | dinI | dinI | KPN_RS32185 | high confidence | dinI | DinI family protein | KPN_RS32185 | dinI | DNA damage-inducible protein I | high | 100.0 | 100.0 | High-confidence GenBank-supported annotation. | identity=100.0; coverage=100.0 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | qualifier_exact | complement(1222172..1222423) | AEOABF_02496;AHHNMN_02088;AHNHFK_03221;ANNNIK_05489;BEDDGA_05691;BGGBBI_05037;BLCKKP_02496;CBCBPB_05394;CHCLDJ_04617;CPJPGI_04368;DGLKOJ_03716;DMJFLM_00724;EKPLKB_03072;EOIIEI_03782;FIIMIJ_05283;FMDNFB_00966;FPBJNE_01708;FPPMFH_01823;GCNAEO_05141;GHEABH_04193;GOALEL_05249;HBAILA_02453;HBKCOO_01999;IBBJOJ_02465;IECKKB_02005;JGNJAB_02313;JJNMLC_02805;JMFOKH_02968;KKELHE_05401;KNNKAF_02831 | DNA damage-inducible protein I | |||
| 68 | group_2202 | gene_presence_absence | yaaA | group_2202 | KPN_RS00030 | none confidence | yaaA | Bacteriophage replication gene A protein (GPA) | KPN_RS00030 | yaaA | peroxide stress protein YaaA | none | 29.41 | 0.46 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.41; coverage=0.46 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5779..6552) | matched_representative_sequence=group_2202 | AEOABF_02498;AHHNMN_02090;AHNHFK_03223;ANNNIK_05491;BEDDGA_05689;BGGBBI_05197;BLCKKP_02494;CBCBPB_05396;CHCLDJ_04619;CPJPGI_04366;DGLKOJ_03718;DMJFLM_00722;EKPLKB_03074;EOIIEI_03784;FIIMIJ_05281;FMDNFB_00964;FPBJNE_01710;FPPMFH_01821;GCNAEO_05143;GHEABH_04195;GOALEL_05340;HBAILA_02451;HBKCOO_01997;IBBJOJ_02463;IECKKB_02003;JGNJAB_02311;JJNMLC_05511;JMFOKH_02970;KKELHE_05403;KNNKAF_02833 | peroxide stress protein YaaA | ||
| 69 | group_6834 | gene_presence_absence | ridA | group_6834 | KPN_RS25090 | high confidence | ridA | RidA family protein | KPN_RS25090 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | high | 100.0 | 100.0 | High-confidence GenBank-supported annotation. | identity=100.0; coverage=100.0 | 40 | 50 | 0.8000 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.04 | 19.2857 | 7.084-52.5 | 7.08396 | 52.5043 | 2.59e-11 | 17.8562 | Panaroo/Bakta+GenBank | qualifier_exact | complement(5088741..5089127) | AENLJA_03519;AEOABF_02532;AHHNMN_01448;AHNHFK_05254;ANNNIK_05582;BEDDGA_00503;BGGBBI_05240;BLCKKP_04925;CBCBPB_03803;CEPDLH_00771;CHCLDJ_02115;CPJPGI_04864;DGLKOJ_03427;DMJFLM_00837;EKPLKB_03490;EOIIEI_04954;FIIMIJ_04862;FMDNFB_04624;FPBJNE_02847;FPPMFH_03412;GCNAEO_04606;GOALEL_02500;HBAILA_04821;HBKCOO_05189;IBBJOJ_04808;IECKKB_04914;JGNJAB_04909;JJNMLC_02625;JMFOKH_02453;KKELHE_04964 | 2-iminobutanoate/2-iminopropanoate deaminase | |||
| 70 | group_4280 | gene_presence_absence | lldD | group_4280 | KPN_RS21315 | none confidence | lldD | Bacteriophage protein | KPN_RS21315 | lldD | FMN-dependent L-lactate dehydrogenase LldD | none | 8.59 | 3.17 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=8.59; coverage=3.17 | 40 | 50 | 0.8000 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.04 | 19.2857 | 7.084-52.5 | 7.08396 | 52.5043 | 2.59e-11 | 17.8562 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4331409..4332593 | matched_representative_sequence=group_4280 | AENLJA_00579;AEOABF_05419;AHHNMN_02820;AHNHFK_05469;ANNNIK_04524;BEDDGA_03764;BGGBBI_04865;BLCKKP_03386;CHCLDJ_03827;CPJPGI_03144;DGLKOJ_04932;EKPLKB_03088;EOIIEI_04288;FIIMIJ_05494;FMDNFB_05377;FPBJNE_03612;FPPMFH_02742;GCNAEO_05364;GOALEL_04722;HBAILA_04441;HBKCOO_03459;HGIJOB_05061;HPFPEC_01013;IBBJOJ_05387;IECKKB_05377;IKDFAP_04700;JGNJAB_03343;JJNMLC_03289;JMFOKH_04731;KKELHE_03235 | FMN-dependent L-lactate dehydrogenase LldD | ||
| 71 | group_7299 | gene_presence_absence | npr | group_7299 | KPN_RS19580 | none confidence | npr | Ren exclusion protein | KPN_RS19580 | npr | PTS phosphocarrier protein NPr | none | 29.28 | 5.10 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.28; coverage=5.10 | 41 | 50 | 0.8200 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.03 | 19.0831 | 7.042-51.71 | 7.04178 | 51.7149 | 2.75e-11 | 17.8149 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3971250..3971522 | matched_representative_sequence=group_7299 | ACMLHL_00637;AEOABF_00920;AHHNMN_00523;AHNHFK_01929;ANNNIK_00773;BEDDGA_00660;BGGBBI_00344;BLCKKP_04426;BMDOOG_05167;CBCBPB_02161;CHCLDJ_00547;CPJPGI_01555;DGLKOJ_00784;DMJFLM_01506;EKPLKB_01613;EOIIEI_01658;FIIMIJ_00386;FMDNFB_01294;FPBJNE_04647;FPPMFH_01005;GOALEL_04534;HBAILA_00885;HBKCOO_01417;IBBJOJ_01596;IECKKB_01058;IILOJN_03544;JGNJAB_01575;JJNMLC_01050;JKABKE_01287;JMFOKH_02182 | PTS phosphocarrier protein NPr | ||
| 72 | spnT | gene_presence_absence | ;spnT | spnT | KPN_RS23390 | none confidence | ;spnT | hypothetical protein;SpnT protein | KPN_RS23390 | IMPACT family protein | none | 18.46 | 1.08 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=18.46; coverage=1.08 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4752182..4752796 | matched_representative_sequence=spnT | AEOABF_02514;AHHNMN_01390;AHNHFK_05236;ANNNIK_05100;BEDDGA_00607;BLCKKP_04943;CHCLDJ_02173;CPJPGI_04846;DGLKOJ_03409;EKPLKB_03508;EOIIEI_04972;FIIMIJ_04844;FMDNFB_04642;FPBJNE_02829;FPPMFH_03430;GCNAEO_04624;GOALEL_02482;HBAILA_04803;HBKCOO_05171;IBBJOJ_04790;IECKKB_04896;JGNJAB_04927;JJNMLC_04673;JMFOKH_02471;KKELHE_04946;KNNKAF_02146;LBJLPI_02853;LEGHFF_02445;LGDJCA_02396;MDEGCH_05050 | IMPACT family protein | |||
| 73 | group_8315 | gene_presence_absence | group_8315 | group_8315 | no_reference_locus | none confidence | group_8315 | hypothetical protein | none | No confident reference gene assignment; report the stable Panaroo cluster ID. | no sequence identity/coverage evidence available | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta | none | No confident GenBank reference match found. The cluster may be accessory, divergent, absent from the reference, or not represented in Panaroo sequence outputs. | AEOABF_05407;AHHNMN_02832;AHNHFK_05481;ANNNIK_04512;BEDDGA_03752;BGGBBI_04853;BLCKKP_03374;CHCLDJ_03815;CPJPGI_03156;DGLKOJ_04944;EKPLKB_03100;EOIIEI_04300;FIIMIJ_05482;FMDNFB_05365;FPBJNE_03624;FPPMFH_02754;GCNAEO_05376;GOALEL_04734;HBAILA_04453;HBKCOO_03447;IBBJOJ_05375;IECKKB_05389;JGNJAB_03355;JJNMLC_03277;JMFOKH_04743;KKELHE_03247;KNNKAF_03836;LBJLPI_03988;LEGHFF_03886;LGDJCA_04411 | hypothetical protein | ||||||||
| 74 | group_8125 | gene_presence_absence | group_8125 | group_8125 | KPN_RS00065 | none confidence | group_8125 | Bacteriophage protein | KPN_RS00065 | DUF2541 family protein | none | 37.32 | 8.16 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.32; coverage=8.16 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12822..13226) | matched_representative_sequence=group_8125 | AEOABF_03050;AHHNMN_02850;AHNHFK_04853;ANNNIK_04493;BEDDGA_03733;BGGBBI_04882;BLCKKP_03355;CHCLDJ_03796;CPJPGI_03175;DGLKOJ_04963;EKPLKB_03118;EOIIEI_04318;FIIMIJ_03075;FMDNFB_04851;FPBJNE_03642;FPPMFH_02772;GCNAEO_03960;GOALEL_04752;HBAILA_04472;HBKCOO_03429;IBBJOJ_03634;IECKKB_03656;JGNJAB_03373;JJNMLC_03258;JMFOKH_04762;KKELHE_03266;KNNKAF_03818;LBJLPI_03970;LEGHFF_03904;LGDJCA_04430 | DUF2541 family protein | |||
| 75 | group_8111 | gene_presence_absence | group_8111 | group_8111 | KPN_RS12745 | none confidence | group_8111 | NTP pyrophosphohydrolase | KPN_RS12745 | YebG family protein | none | 32.34 | 9.80 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.34; coverage=9.80 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2586908..2587255) | matched_representative_sequence=20_refound_376 | 20_refound_376;26_refound_468;30_refound_527;36_refound_605;39_refound_647;45_refound_706;AEOABF_05490;AHHNMN_05351;AHNHFK_05583;ANNNIK_05354;BEDDGA_05661;BLCKKP_05599;CHCLDJ_05447;DGLKOJ_05471;EKPLKB_05317;EOIIEI_05303;FIIMIJ_05617;FMDNFB_05473;FPBJNE_05350;GOALEL_05318;HBAILA_05633;HBKCOO_05457;IBBJOJ_05443;JGNJAB_05486;JJNMLC_05390;JMFOKH_05443;KKELHE_05575;KNNKAF_05317;LBJLPI_05315;LEGHFF_05366 | YebG family protein | |||
| 76 | group_8002 | gene_presence_absence | yeiP | group_8002 | KPN_RS13995 | none confidence | yeiP | elongation factor P-like protein YeiP | KPN_RS13995 | yeiP | elongation factor P-like protein YeiP | none | 20.55 | 8.06 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=20.55; coverage=8.06 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2857630..2858202 | matched_representative_sequence=group_8002 | AEOABF_05496;AHHNMN_05345;AHNHFK_05589;ANNNIK_05348;BEDDGA_05655;BGGBBI_05094;BLCKKP_05605;CHCLDJ_05453;CPJPGI_05645;DGLKOJ_05477;EKPLKB_05323;EOIIEI_05309;FIIMIJ_05623;FMDNFB_05467;FPBJNE_05356;FPPMFH_05335;GCNAEO_02630;GOALEL_05312;HBAILA_05627;HBKCOO_05463;IBBJOJ_05449;IECKKB_05450;JGNJAB_05492;JJNMLC_05396;JMFOKH_05437;KKELHE_05569;KNNKAF_05323;LBJLPI_05309;LEGHFF_05360;LGDJCA_05301 | elongation factor P-like protein YeiP | ||
| 77 | group_7925 | gene_presence_absence | rpsT | group_7925 | KPN_RS00095 | none confidence | rpsT | 30S ribosomal protein S20 | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 46.32 | 4.55 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.32; coverage=4.55 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7925 | AEOABF_05503;AHHNMN_05338;AHNHFK_05697;ANNNIK_05341;BEDDGA_05732;BGGBBI_05087;BLCKKP_05746;CHCLDJ_05460;CPJPGI_05811;DGLKOJ_05484;EKPLKB_05330;EOIIEI_05316;FIIMIJ_05629;FMDNFB_05460;FPBJNE_05363;FPPMFH_05342;GCNAEO_02623;GOALEL_05305;HBAILA_05620;HBKCOO_05470;IBBJOJ_05540;IECKKB_05457;JGNJAB_05618;JJNMLC_05403;JMFOKH_05562;KKELHE_05562;KNNKAF_05330;LBJLPI_05302;LEGHFF_05353;LGDJCA_05294 | 30S ribosomal protein S20 | ||
| 78 | group_7317 | gene_presence_absence | lspA | group_7317 | KPN_RS00110 | none confidence | lspA | signal peptidase II | KPN_RS00110 | lspA | signal peptidase II | none | 35.61 | 4.12 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.61; coverage=4.12 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 23564..24064 | matched_representative_sequence=group_7317 | 73_refound_1099_pseudo;75_refound_1132_pseudo;91_refound_1354_pseudo;AEOABF_05423;AHHNMN_02816;AHNHFK_05465;ANNNIK_04528;BEDDGA_03768;BGGBBI_04869;BLCKKP_03390;CHCLDJ_03831;CPJPGI_03140;DGLKOJ_04928;EKPLKB_03084;EOIIEI_04284;FIIMIJ_05498;FPBJNE_03608;FPPMFH_02738;GCNAEO_05360;GOALEL_04718;HBAILA_04437;HBKCOO_03463;IBBJOJ_05391;IECKKB_05373;JGNJAB_03339;JJNMLC_03293;JMFOKH_04727;KKELHE_03231;KNNKAF_03852;LEGHFF_03870 | signal peptidase II | ||
| 79 | group_7262 | gene_presence_absence | group_7262 | group_7262 | KPN_RS07300 | none confidence | group_7262 | Cyanophage baseplate Pam3 plug gp18 domain-containing protein | KPN_RS07300 | MetQ/NlpA family ABC transportersubstrate-binding protein | none | 23.78 | 4.95 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=23.78; coverage=4.95 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1528311..1529117 | matched_representative_sequence=group_7262 | AEOABF_05493;AHHNMN_05348;AHNHFK_05586;ANNNIK_05351;BEDDGA_05658;BGGBBI_05097;BLCKKP_05602;CHCLDJ_05450;CPJPGI_05642;DGLKOJ_05474;EKPLKB_05320;EOIIEI_05306;FIIMIJ_05620;FMDNFB_05470;FPBJNE_05353;FPPMFH_05332;GCNAEO_02633;GOALEL_05315;HBAILA_05630;HBKCOO_05460;IBBJOJ_05446;IECKKB_05447;JGNJAB_05489;JJNMLC_05393;JMFOKH_05440;KKELHE_05572;KNNKAF_05320;LBJLPI_05312;LEGHFF_05363;LGDJCA_05304 | MetQ/NlpA family ABC transportersubstrate-binding protein | |||
| 80 | group_7219 | gene_presence_absence | group_7219 | group_7219 | KPN_RS00065 | none confidence | group_7219 | DUF2541 family protein | KPN_RS00065 | DUF2541 family protein | none | 43.15 | 3.00 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=43.15; coverage=3.00 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12822..13226) | matched_representative_sequence=20_refound_372 | 20_refound_372;AEOABF_05114;AHHNMN_04798;AHNHFK_05367;BEDDGA_05319;BLCKKP_05117;CBCBPB_05220;CHCLDJ_04972;CPJPGI_05038;DGLKOJ_05109;EKPLKB_03527;EOIIEI_05392;FIIMIJ_04947;FMDNFB_04661;FPBJNE_02810;FPPMFH_05395;GCNAEO_04948;GOALEL_04959;HBAILA_04949;HBKCOO_04853;IBBJOJ_04994;IECKKB_05000;JGNJAB_04995;JJNMLC_04692;JMFOKH_02491;KKELHE_05050;KNNKAF_04869;LEGHFF_02426;LGDJCA_02377;MDEGCH_04964 | DUF2541 family protein | |||
| 81 | group_7202 | gene_presence_absence | group_7202 | group_7202 | KPN_RS11145 | none confidence | group_7202 | ATP-grasp fold amidoligase family protein | KPN_RS11145 | ATP-grasp fold amidoligase family protein | none | 26.71 | 4.76 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=26.71; coverage=4.76 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2266264..>2266959) | matched_representative_sequence=18_refound_345 | 18_refound_345;23_refound_427;25_refound_459;26_refound_467;28_refound_502;37_refound_617;43_refound_687;44_refound_696;45_refound_705;49_refound_757;62_refound_929;63_refound_947;64_refound_965;65_refound_977;66_refound_990;67_refound_1001;80_refound_1199;91_refound_1351;97_refound_1443;AHNHFK_04841;ANNNIK_04505;BEDDGA_03745;BLCKKP_03367;CHCLDJ_03808;CPJPGI_03163;DGLKOJ_04951;FIIMIJ_03063;FMDNFB_04839;GCNAEO_03948;HBAILA_04460 | ATP-grasp fold amidoligase family protein | |||
| 82 | group_7153 | gene_presence_absence | yfaU | group_7153 | KPN_RS14230 | none confidence | yfaU | Rz1 lytic protein | KPN_RS14230 | yfaU | 2-keto-3-deoxy-L-rhamnonate aldolase | none | 21.99 | 5.25 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=21.99; coverage=5.25 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2917878..2918681) | matched_representative_sequence=group_7153 | AEOABF_05409;AHHNMN_02830;AHNHFK_05479;ANNNIK_04514;BEDDGA_03754;BGGBBI_04855;BLCKKP_03376;CHCLDJ_03817;CPJPGI_03154;DGLKOJ_04942;EKPLKB_03098;EOIIEI_04298;FIIMIJ_05484;FMDNFB_05367;FPBJNE_03622;FPPMFH_02752;GCNAEO_05374;GOALEL_04732;HBAILA_04451;HBKCOO_03449;IBBJOJ_05377;IECKKB_05387;JGNJAB_03353;JJNMLC_03279;JMFOKH_04741;KKELHE_03245;KNNKAF_03838;LBJLPI_03990;LEGHFF_03884;LGDJCA_04409 | 2-keto-3-deoxy-L-rhamnonate aldolase | ||
| 83 | group_7126 | gene_presence_absence | group_7126 | group_7126 | KPN_RS11490 | none confidence | group_7126 | hypothetical protein | KPN_RS11490 | hypothetical protein | none | 39.18 | 8.20 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.18; coverage=8.20 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2336344..2336502) | matched_representative_sequence=80_refound_1200 | 80_refound_1200;AEOABF_05113;AHHNMN_04797;AHNHFK_05368;BEDDGA_05318;BGGBBI_04701;BLCKKP_05116;CBCBPB_05219;CHCLDJ_04973;CPJPGI_05039;DGLKOJ_05110;EKPLKB_03528;FIIMIJ_04946;FMDNFB_04662;FPBJNE_02809;FPPMFH_05396;GCNAEO_04947;GOALEL_04960;HBAILA_04950;HBKCOO_04852;IBBJOJ_04995;IECKKB_05001;JGNJAB_04994;JJNMLC_04693;JMFOKH_02492;KKELHE_05051;KNNKAF_04868;LEGHFF_02425;LGDJCA_02376;MDEGCH_04963 | hypothetical protein | |||
| 84 | group_7065 | gene_presence_absence | fkpB | group_7065 | KPN_RS00115 | none confidence | fkpB | Lipoprotein | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 37.37 | 2.92 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.37; coverage=2.92 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=group_7065 | AEOABF_05495;AHHNMN_05346;AHNHFK_05588;ANNNIK_05349;BEDDGA_05656;BGGBBI_05095;BLCKKP_05604;CHCLDJ_05452;CPJPGI_05644;DGLKOJ_05476;EKPLKB_05322;EOIIEI_05308;FIIMIJ_05622;FMDNFB_05468;FPBJNE_05355;FPPMFH_05334;GCNAEO_02631;GOALEL_05313;HBAILA_05628;HBKCOO_05462;IBBJOJ_05448;IECKKB_05449;JGNJAB_05491;JJNMLC_05395;JMFOKH_05438;KKELHE_05570;KNNKAF_05322;LBJLPI_05310;LEGHFF_05361;LGDJCA_05302 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 85 | grlR | gene_presence_absence | rpsT | grlR | KPN_RS00095 | none confidence | rpsT | Negative regulator GrlR | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 42.83 | 1.96 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.83; coverage=1.96 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=grlR | AEOABF_05410;AHHNMN_02829;AHNHFK_05478;ANNNIK_04515;BEDDGA_03755;BGGBBI_04856;BLCKKP_03377;CHCLDJ_03818;CPJPGI_03153;DGLKOJ_04941;EKPLKB_03097;EOIIEI_04297;FIIMIJ_05485;FMDNFB_05368;FPBJNE_03621;FPPMFH_02751;GCNAEO_05373;GOALEL_04731;HBAILA_04450;HBKCOO_03450;IBBJOJ_05378;IECKKB_05386;JGNJAB_03352;JJNMLC_03280;JMFOKH_04740;KKELHE_03244;KNNKAF_03839;LBJLPI_03991;LEGHFF_03883;LGDJCA_04408 | 30S ribosomal protein S20 | ||
| 86 | group_6679 | gene_presence_absence | group_6679 | group_6679 | KPN_RS05030 | none confidence | group_6679 | Bacteriophage protein | KPN_RS05030 | DUF421 domain-containing protein | none | 31.10 | 3.99 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.10; coverage=3.99 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1052106..1052798 | matched_representative_sequence=group_6679 | AEOABF_05489;AHHNMN_05352;AHNHFK_05582;ANNNIK_05355;BEDDGA_05662;BGGBBI_05100;BLCKKP_05598;CHCLDJ_05446;CPJPGI_05639;DGLKOJ_05470;EKPLKB_05316;EOIIEI_05302;FIIMIJ_05616;FMDNFB_05474;FPBJNE_05349;FPPMFH_05329;GCNAEO_02636;GOALEL_05319;HBAILA_05634;HBKCOO_05456;IBBJOJ_05442;IECKKB_05444;JGNJAB_05485;JJNMLC_05389;JMFOKH_05444;KKELHE_05576;KNNKAF_05316;LBJLPI_05316;LEGHFF_05367;LGDJCA_05308 | DUF421 domain-containing protein | |||
| 87 | group_6432 | gene_presence_absence | group_6432 | group_6432 | KPN_RS05800 | none confidence | group_6432 | Maf family protein | KPN_RS05800 | Maf family protein | none | 33.62 | 3.12 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=33.62; coverage=3.12 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1236878..1237462) | matched_representative_sequence=group_6432 | AEOABF_03049;AHHNMN_02849;AHNHFK_04852;ANNNIK_04494;BEDDGA_03734;BGGBBI_04883;BLCKKP_03356;CHCLDJ_03797;CPJPGI_03174;DGLKOJ_04962;EKPLKB_03117;EOIIEI_04317;FIIMIJ_03074;FMDNFB_04850;FPBJNE_03641;FPPMFH_02771;GCNAEO_03959;GOALEL_04751;HBAILA_04471;HBKCOO_03430;IBBJOJ_03633;IECKKB_03655;JGNJAB_03372;JJNMLC_03259;JMFOKH_04761;KKELHE_03265;KNNKAF_03819;LBJLPI_03971;LEGHFF_03903;LGDJCA_04429 | Maf family protein | |||
| 88 | group_6215 | gene_presence_absence | lspA | group_6215 | KPN_RS00110 | none confidence | lspA | Lysozyme | KPN_RS00110 | lspA | signal peptidase II | none | 38.18 | 1.51 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.18; coverage=1.51 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 23564..24064 | matched_representative_sequence=group_6215 | AEOABF_05408;AHHNMN_02831;AHNHFK_05480;ANNNIK_04513;BEDDGA_03753;BGGBBI_04854;BLCKKP_03375;CHCLDJ_03816;CPJPGI_03155;DGLKOJ_04943;EKPLKB_03099;EOIIEI_04299;FIIMIJ_05483;FMDNFB_05366;FPBJNE_03623;FPPMFH_02753;GCNAEO_05375;GOALEL_04733;HBAILA_04452;HBKCOO_03448;IBBJOJ_05376;IECKKB_05388;JGNJAB_03354;JJNMLC_03278;JMFOKH_04742;KKELHE_03246;KNNKAF_03837;LBJLPI_03989;LEGHFF_03885;LGDJCA_04410 | signal peptidase II | ||
| 89 | group_6054 | gene_presence_absence | malZ | group_6054 | KPN_RS01840 | none confidence | malZ | Peptidase M41 domain-containing protein | KPN_RS01840 | malZ | maltodextrin glucosidase | none | 23.82 | 2.65 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=23.82; coverage=2.65 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 385411..387228 | matched_representative_sequence=group_6054 | AEOABF_05497;AHHNMN_05344;AHNHFK_05590;ANNNIK_05347;BEDDGA_05654;BGGBBI_05093;BLCKKP_05606;CHCLDJ_05454;CPJPGI_05646;DGLKOJ_05478;EKPLKB_05324;EOIIEI_05310;FIIMIJ_05624;FMDNFB_05466;FPBJNE_05357;FPPMFH_05336;GCNAEO_02629;GOALEL_05311;HBAILA_05626;HBKCOO_05464;IBBJOJ_05450;IECKKB_05451;JGNJAB_05493;JJNMLC_05397;JMFOKH_05436;KKELHE_05568;KNNKAF_05324;LBJLPI_05308;LEGHFF_05359;LGDJCA_05300 | maltodextrin glucosidase | ||
| 90 | group_5931 | gene_presence_absence | group_5931 | group_5931 | KPN_RS23815 | none confidence | group_5931 | Dit-like phage tail protein N-terminal domain-containing protein | KPN_RS23815 | maltoporin | none | 25.82 | 2.50 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=25.82; coverage=2.50 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4842153..4843442 | matched_representative_sequence=group_5931 | AEOABF_05492;AHHNMN_05349;AHNHFK_05585;ANNNIK_05352;BEDDGA_05659;BGGBBI_05098;BLCKKP_05601;CHCLDJ_05449;CPJPGI_05641;DGLKOJ_05473;EKPLKB_05319;EOIIEI_05305;FIIMIJ_05619;FMDNFB_05471;FPBJNE_05352;FPPMFH_05331;GCNAEO_02634;GOALEL_05316;HBAILA_05631;HBKCOO_05459;IBBJOJ_05445;IECKKB_05446;JGNJAB_05488;JJNMLC_05392;JMFOKH_05441;KKELHE_05573;KNNKAF_05319;LBJLPI_05313;LEGHFF_05364;LGDJCA_05305 | maltoporin | |||
| 91 | group_5470 | gene_presence_absence | lamG | group_5470 | KPN_RS20210 | none confidence | lamG | LamG domain-containing protein | KPN_RS20210 | hydrolase | none | 34.08 | 2.05 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.08; coverage=2.05 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4083081..4084079 | matched_representative_sequence=group_5470 | AEOABF_05387;AHHNMN_02306;AHNHFK_05684;ANNNIK_05733;BEDDGA_05726;BGGBBI_05289;BLCKKP_03079;CHCLDJ_03124;CPJPGI_03703;DGLKOJ_05339;EKPLKB_05194;EOIIEI_05393;FIIMIJ_01902;FMDNFB_05578;FPBJNE_05284;FPPMFH_03553;GCNAEO_02621;GOALEL_03177;HBAILA_02860;HBKCOO_05265;IBBJOJ_03031;IECKKB_02498;JGNJAB_02946;JJNMLC_01637;JMFOKH_02981;KKELHE_03229;KNNKAF_05198;LBJLPI_01589;LEGHFF_03868;LGDJCA_05202 | hydrolase | |||
| 92 | group_4414 | gene_presence_absence | group_4414 | group_4414 | KPN_RS02240 | none confidence | group_4414 | Bacteriophage protein | KPN_RS02240 | YczE/YyaS/YitT family protein | none | 30.28 | 1.76 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=30.28; coverage=1.76 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 464445..465059 | matched_representative_sequence=group_4414 | AEOABF_05494;AHHNMN_05347;AHNHFK_05587;ANNNIK_05350;BEDDGA_05657;BGGBBI_05096;BLCKKP_05603;CHCLDJ_05451;CPJPGI_05643;DGLKOJ_05475;EKPLKB_05321;EOIIEI_05307;FIIMIJ_05621;FMDNFB_05469;FPBJNE_05354;FPPMFH_05333;GCNAEO_02632;GOALEL_05314;HBAILA_05629;HBKCOO_05461;IBBJOJ_05447;IECKKB_05448;JGNJAB_05490;JJNMLC_05394;JMFOKH_05439;KKELHE_05571;KNNKAF_05321;LBJLPI_05311;LEGHFF_05362;LGDJCA_05303 | YczE/YyaS/YitT family protein | |||
| 93 | group_2508 | gene_presence_absence | msyB | group_2508 | KPN_RS00060 | none confidence | msyB | DUF4071 domain-containing protein | KPN_RS00060 | msyB | acidic protein MsyB | none | 29.27 | 0.71 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.27; coverage=0.71 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12045..12794) | matched_representative_sequence=group_2508 | AEOABF_05122;AHHNMN_04806;AHNHFK_05565;ANNNIK_05664;BEDDGA_05328;BGGBBI_05320;BLCKKP_05125;CHCLDJ_04963;CPJPGI_05030;DGLKOJ_05100;EKPLKB_03519;EOIIEI_05320;FIIMIJ_04956;FMDNFB_04653;FPBJNE_02818;FPPMFH_05322;GCNAEO_04957;GOALEL_04951;HBAILA_04940;HBKCOO_04861;IBBJOJ_04986;IECKKB_04992;JGNJAB_05004;JJNMLC_04684;JMFOKH_02482;KKELHE_05042;KNNKAF_04877;LEGHFF_02434;LGDJCA_02385;MDEGCH_05334 | acidic protein MsyB | ||
| 94 | group_617 | gene_presence_absence | KPN_RS19295-like (group_617) | group_617 | KPN_RS19295 | low confidence | group_617 | peptidoglycan lytic exotransglycosylase | KPN_RS19295 | type 1 glutamine amidotransferasedomain-containing protein | low | 99.63 | 59.03 | Low-confidence locus-level GenBank rescue. | identity=99.63; coverage=59.03 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3922434..3922970 | matched_representative_sequence=group_6173 | AEOABF_05491;AHHNMN_05350;AHNHFK_05584;ANNNIK_05353;BEDDGA_05660;BGGBBI_05099;BLCKKP_05600;CHCLDJ_05448;CPJPGI_05640;DGLKOJ_05472;EKPLKB_05318;EOIIEI_05304;FIIMIJ_05618;FMDNFB_05472;FPBJNE_05351;FPPMFH_05330;GCNAEO_02635;GOALEL_05317;HBAILA_05632;HBKCOO_05458;IBBJOJ_05444;IECKKB_05445;JGNJAB_05487;JJNMLC_05391;JMFOKH_05442;KKELHE_05574;KNNKAF_05318;LBJLPI_05314;LEGHFF_05365;LGDJCA_05306 | type 1 glutamine amidotransferasedomain-containing protein | |||
| 95 | group_8737 | gene_presence_absence | group_8737 | group_8737 | KPN_RS00035 | none confidence | group_8737 | hypothetical protein;Protein kinase domain-containing protein | KPN_RS00035 | alanine/glycine:cation symporter family protein | none | 28.66 | 0.60 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=28.66; coverage=0.60 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(6630..8060) | matched_representative_sequence=group_8737 | BHONMK_05068;DDIAJH_04909;DDIAJH_04910;DFFAJH_05012;EANECB_04728;EDGMEC_04868;EMKGNF_05060;FCNFGC_04996;FIDANP_04768;HFMEMF_05231;HGIJOB_04963;IKNKDK_04690;JEGCDC_04910;KAFEBA_05032;KKNIEC_04647;KLPANJ_05117;KPDGKM_05038;MBNFKH_04003;MJEKEA_04269;OCFBPG_04449;OCGJJJ_04836;OCGJJJ_04837;PKAHKO_05159;PMCEMD_04520 | alanine/glycine:cation symporter family protein | |||
| 96 | group_8416 | gene_presence_absence | group_8416 | group_8416 | KPN_RS32305 | none confidence | group_8416 | hypothetical protein;Transmembrane protein | KPN_RS32305 | DUF2575 domain-containing protein | none | 40.07 | 1.78 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=40.07; coverage=1.78 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | <19553..19758 | matched_representative_sequence=89_refound_1324 | 89_refound_1324;ACMLHL_05060;BEDOHD_04968;CNHCKF_04570;DDIAJH_04505;EANECB_05412;EDGMEC_05041;FIDANP_05191;FLEPEF_05666;HFMEMF_05130;IKNKDK_05201;JEGCDC_05323;JKABKE_05306;KAFEBA_04792;KKNIEC_05194;KLPANJ_05032;KPDGKM_05288;MBNFKH_05428;MJEKEA_04860;OHBKLB_04705;PKAHKO_05252;PMCEMD_05166 | DUF2575 domain-containing protein | |||
| 97 | group_7452 | gene_presence_absence | group_7452 | group_7452 | KPN_RS00025 | none confidence | group_7452 | XRE family transcriptional regulator | KPN_RS00025 | hypothetical protein | none | 35.91 | 3.00 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=35.91; coverage=3.00 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | 5332..5710 | matched_representative_sequence=group_7452 | AIJMHO_04703;BMDOOG_04781;CCKLPP_04854;CEPDLH_04532;EANECB_05375;EDGMEC_05418;FFLFOK_04596;FLEPEF_04840;HABJKE_04696;HFMEMF_05224;JEGCDC_05406;KAFEBA_05298;KKNIEC_05253;KLPANJ_05469;KPDGKM_05424;LBJLPI_04354;MBNFKH_05127;MJEKEA_05299;OCFBPG_05240;OHBKLB_04273;PKAHKO_05127;PMCEMD_05181 | hypothetical protein | |||
| 98 | group_2083 | gene_presence_absence | group_2083 | group_2083 | KPN_RS01710 | none confidence | group_2083 | MPN domain-containing protein | KPN_RS01710 | isochorismatase family protein | none | 37.80 | 3.56 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.80; coverage=3.56 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | 359394..359906 | matched_representative_sequence=group_2083 | AIJMHO_04704;BMDOOG_04782;CCKLPP_04853;CEPDLH_04533;EANECB_05374;EDGMEC_05417;FFLFOK_04597;FLEPEF_04839;HABJKE_04697;HFMEMF_05223;JEGCDC_05405;KAFEBA_05297;KKNIEC_05254;KLPANJ_05468;KPDGKM_05425;LBJLPI_04355;MBNFKH_05126;MJEKEA_05298;OCFBPG_05239;OHBKLB_04272;PKAHKO_05128;PMCEMD_05182 | isochorismatase family protein | |||
| 99 | group_3897 | gene_presence_absence | group_3897 | group_3897 | KPN_RS32305 | none confidence | group_3897 | DUF2575 domain-containing protein | KPN_RS32305 | DUF2575 domain-containing protein | none | 39.12 | 6.31 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.12; coverage=6.31 | 13 | 50 | 0.2600 | 44 | 50 | 0.8800 | controls (blaKPC negative) | -3.04 | 0.0525843 | 0.01874-0.1475 | 0.0187416 | 0.147539 | 6.5e-11 | 17.4363 | Panaroo/Bakta+GenBank | nucleotide_similarity | <19553..19758 | matched_representative_sequence=group_3897 | ACMLHL_00892;AENLJA_03981;AIJMHO_04529;BEDOHD_04716;BHONMK_01817;BMDOOG_00336;CCKLPP_01401;CEPDLH_04780;CNHCKF_03280;DDIAJH_02925;DFFAJH_01131;DFFEKE_02660;DMJFLM_03642;EANECB_00151;EDGMEC_00433;EEHIAL_00346;EMKGNF_02911;FCNFGC_00394;FFLFOK_02617;FIDANP_02569;FKAIBJ_00592;FLEPEF_01656;GHEABH_00641;GNFDFK_01157;HABJKE_02312;HFMEMF_00500;HGIJOB_01886;HPFPEC_04817;IDECLH_04620;IILOJN_00264 | DUF2575 domain-containing protein | |||
| 100 | group_3876 | gene_presence_absence | group_3876 | group_3876 | KPN_RS04255 | none confidence | group_3876 | Universal stress protein G;hypothetical protein | KPN_RS04255 | universal stress protein | none | 92.82 | 12.96 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=92.82; coverage=12.96 | 13 | 50 | 0.2600 | 44 | 50 | 0.8800 | controls (blaKPC negative) | -3.04 | 0.0525843 | 0.01874-0.1475 | 0.0187416 | 0.147539 | 6.5e-11 | 17.4363 | Panaroo/Bakta+GenBank | nucleotide_similarity | 878435..878866 | matched_representative_sequence=group_3876 | ACMLHL_00893;AENLJA_03980;AIJMHO_04530;BEDOHD_04717;BHONMK_01818;BMDOOG_00335;CCKLPP_01402;CEPDLH_04781;CNHCKF_03279;DDIAJH_02924;DFFAJH_01130;DFFEKE_02659;DMJFLM_03641;EANECB_00150;EDGMEC_00434;EEHIAL_00345;EMKGNF_02912;FCNFGC_00393;FFLFOK_02616;FIDANP_02568;FKAIBJ_00593;FLEPEF_01655;GHEABH_00640;GNFDFK_01158;HABJKE_02313;HFMEMF_00501;HGIJOB_01885;HPFPEC_04818;IDECLH_04619;IILOJN_00263 | universal stress protein |
Showing 100 of 100 rows.
| rank | feature id | feature type | display name | display label | gene name | product | reference locus tag | reference gene | reference product | annotation confidence | reference identity | reference coverage | interpretation note | annotation evidence | case (blaKPC positive) present | case (blaKPC positive) total | case (blaKPC positive) frequency | control (blaKPC negative) present | control (blaKPC negative) total | control (blaKPC negative) frequency | enriched in | beta | odds ratio | odds ratio ci95 | odds ratio ci95 lower | odds ratio ci95 upper | pyseer pvalue | q value | priority score | annotation source | reference match type | reference location | annotation note | cluster member ids | notes | display product |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | blaKPC67~~~blaKPC2 | gene_presence_absence | blaKPC-67;blaKPC-2 | blaKPC67~~~blaKPC2 | KPN_RS23095 | none confidence | blaKPC-67;blaKPC-2 | inhibitor-resistant carbapenem-hydrolyzing class A beta-lactamase KPC-67;carbapenem-hydrolyzing class A beta-lactamase KPC-2 | KPN_RS23095 | wecC | UDP-N-acetyl-D-mannosamine dehydrogenase | none | 18.12 | 1.67 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=18.12; coverage=1.67 | 50 | 50 | 1.0000 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 5.64 | 280.556 | 16.16-4870 | 16.161 | 4870.44 | 2.27e-17 | 27.7761 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4695680..4696942 | matched_representative_sequence=blaKPC67~~~blaKPC2 | ACMLHL_04658;AENLJA_04785;AEOABF_05514;AHHNMN_05377;AHNHFK_04957;ANNNIK_04399;BEDDGA_05706;BGGBBI_03022;BLCKKP_05532;BMDOOG_04890;CBCBPB_05547;CHCLDJ_05485;CPJPGI_05429;DFFEKE_04972;DGLKOJ_05282;DMJFLM_05327;EKPLKB_05140;EMKGNF_05188;EOIIEI_04855;FIIMIJ_04893;FMDNFB_05254;FPBJNE_05333;FPPMFH_04410;GCNAEO_05349;GHEABH_04713;GNFDFK_05248;GOALEL_04643;HBAILA_05275;HBKCOO_05216;IBBJOJ_05467 | UDP-N-acetyl-D-mannosamine dehydrogenase | ||
| 2 | group_8655 | gene_presence_absence | ;tnp | group_8655 | KPN_RS08915 | none confidence | ;tnp | Transposase IS4-like domain-containing protein;hypothetical protein;IS1182 family ISKpn6 transposase | KPN_RS08915 | VOC family protein | none | 26.78 | 1.14 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=26.78; coverage=1.14 | 49 | 50 | 0.9800 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.52 | 91.6667 | 16.1-522 | 16.0982 | 521.968 | 7.52e-16 | 24.6421 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1833037..1833792 | matched_representative_sequence=group_8655 | ACMLHL_04657;AENLJA_04784;AEOABF_05513;AHHNMN_05376;AHNHFK_04956;ANNNIK_04398;BEDDGA_05705;BGGBBI_03023;BLCKKP_05533;BMDOOG_04891;CBCBPB_05546;CHCLDJ_05484;CPJPGI_05428;DFFEKE_04971;DGLKOJ_05281;DMJFLM_05326;EKPLKB_05141;EMKGNF_05187;EOIIEI_04854;FIIMIJ_04894;FMDNFB_05255;FPBJNE_05332;FPPMFH_04411;GCNAEO_05350;GHEABH_04675;GOALEL_04644;HBAILA_05274;HBKCOO_05217;IBBJOJ_05466;IECKKB_05470 | VOC family protein | |||
| 3 | group_8585 | gene_presence_absence | ;tnpA | group_8585 | KPN_RS00035 | none confidence | ;tnpA | Tn3 family transposase;hypothetical protein;Tn3-like element Tn4401 family transposase | KPN_RS00035 | alanine/glycine:cation symporter family protein | none | 27.66 | 0.40 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.66; coverage=0.40 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(6630..8060) | matched_representative_sequence=group_8585 | ACMLHL_04661;AENLJA_04788;AEOABF_05517;AHHNMN_05380;ANNNIK_04402;BEDDGA_05370;BGGBBI_03019;BLCKKP_05529;BMDOOG_04887;CBCBPB_05550;CHCLDJ_05488;CPJPGI_05432;DFFEKE_04975;DGLKOJ_05285;DMJFLM_05330;EKPLKB_05137;EMKGNF_05191;EOIIEI_04858;FIIMIJ_04890;FMDNFB_05251;FPBJNE_05336;FPPMFH_04407;GCNAEO_05346;GHEABH_04710;GOALEL_04640;HBAILA_05278;HBKCOO_05213;IBBJOJ_05470;IECKKB_05474;IILOJN_05039 | alanine/glycine:cation symporter family protein | |||
| 4 | group_5300 | gene_presence_absence | istB | group_5300 | KPN_RS03045 | none confidence | istB | IS21-like element ISKpn7 family helper ATPase IstB | KPN_RS03045 | YbdK family carboxylate-amine ligase | none | 22.68 | 1.92 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=22.68; coverage=1.92 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(633134..634249) | matched_representative_sequence=group_5300 | ACMLHL_04659;AENLJA_04786;AEOABF_05515;AHHNMN_05378;ANNNIK_04400;BEDDGA_05735;BGGBBI_03021;BLCKKP_05531;BMDOOG_04889;CBCBPB_05548;CHCLDJ_05486;CPJPGI_05430;DFFEKE_04973;DGLKOJ_05283;DMJFLM_05328;EKPLKB_05139;EMKGNF_05189;EOIIEI_04856;FIIMIJ_04892;FMDNFB_05253;FPBJNE_05334;FPPMFH_04409;GCNAEO_05348;GHEABH_04712;GOALEL_04642;HBAILA_05276;HBKCOO_05215;IBBJOJ_05468;IECKKB_05472;IILOJN_05041 | YbdK family carboxylate-amine ligase | |||
| 5 | group_4387 | gene_presence_absence | tnp | group_4387 | KPN_RS00100 | none confidence | tnp | IS21 family ISKpn7 transposase | KPN_RS00100 | ribF | bifunctional riboflavin kinase/FAD synthetase | none | 40.31 | 1.17 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.31; coverage=1.17 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | 19766..20704 | matched_representative_sequence=group_4387 | ACMLHL_04660;AENLJA_04787;AEOABF_05516;AHHNMN_05379;ANNNIK_04401;BEDDGA_05734;BGGBBI_03020;BLCKKP_05530;BMDOOG_04888;CBCBPB_05549;CHCLDJ_05487;CPJPGI_05431;DFFEKE_04974;DGLKOJ_05284;DMJFLM_05329;EKPLKB_05138;EMKGNF_05190;EOIIEI_04857;FIIMIJ_04891;FMDNFB_05252;FPBJNE_05335;FPPMFH_04408;GCNAEO_05347;GHEABH_04711;GOALEL_04641;HBAILA_05277;HBKCOO_05214;IBBJOJ_05469;IECKKB_05473;IILOJN_05040 | bifunctional riboflavin kinase/FAD synthetase | ||
| 6 | tnpR | gene_presence_absence | thrC | tnpR | KPN_RS00020 | none confidence | thrC | Tn3-like element Tn4401 family resolvase TnpR | KPN_RS00020 | thrC | threonine synthase | none | 32.30 | 0.58 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.30; coverage=0.58 | 48 | 50 | 0.9600 | 13 | 50 | 0.2600 | cases (blaKPC positive) | 4.22 | 53.8889 | 13.09-221.9 | 13.0881 | 221.882 | 1.13e-14 | 22.6988 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3737..5017 | matched_representative_sequence=tnpR | ACMLHL_04662;AENLJA_04789;AEOABF_05518;AHHNMN_05381;ANNNIK_04403;BEDDGA_05369;BGGBBI_03018;BLCKKP_05528;BMDOOG_04886;CBCBPB_05551;CHCLDJ_05489;CPJPGI_05433;DFFEKE_04976;DGLKOJ_05286;DMJFLM_05331;EKPLKB_05136;EMKGNF_05192;EOIIEI_04859;FIIMIJ_04889;FMDNFB_05250;FPBJNE_05337;FPPMFH_04406;GCNAEO_05345;GHEABH_04709;GOALEL_04639;HBAILA_05279;HBKCOO_05212;IBBJOJ_05471;IECKKB_05475;IILOJN_05038 | threonine synthase | ||
| 7 | group_7379 | gene_presence_absence | group_7379 | group_7379 | KPN_RS11035 | none confidence | group_7379 | Transcriptional regulator | KPN_RS11035 | winged helix-turn-helix transcriptionalregulator | none | 54.79 | 18.28 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=54.79; coverage=18.28 | 43 | 50 | 0.8600 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 20.5838 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2243450..2243911 | matched_representative_sequence=group_7379 | 27_refound_477_pseudo;29_refound_510_pseudo;31_refound_532_pseudo;34_refound_585_pseudo;47_refound_720_pseudo;52_refound_787_pseudo;70_refound_1043_pseudo;99_refound_1476_pseudo;AEOABF_01427;AHHNMN_04661;AHNHFK_00870;ANNNIK_00014;BEDDGA_01711;BGGBBI_02160;BLCKKP_00671;CBCBPB_03720;CHCLDJ_04823;CPJPGI_02590;DGLKOJ_00212;EKPLKB_00674;EOIIEI_01929;FIIMIJ_01513;FMDNFB_01649;FPBJNE_00845;FPPMFH_03934;GCNAEO_01540;GOALEL_01412;HBAILA_02424;HBKCOO_02444;IBBJOJ_04654 | winged helix-turn-helix transcriptionalregulator | |||
| 8 | ybcN | gene_presence_absence | fkpB | ybcN | KPN_RS00115 | none confidence | fkpB | Uncharacterized protein YbcN | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 44.59 | 1.97 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=44.59; coverage=1.97 | 42 | 50 | 0.8400 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.47 | 29 | 9.957-84.47 | 9.95669 | 84.4658 | 1.88e-13 | 20.5838 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=ybcN | AENLJA_03560;AEOABF_00915;AHHNMN_00518;AHNHFK_01924;ANNNIK_00778;BEDDGA_00655;BGGBBI_00339;BLCKKP_04431;CBCBPB_02166;CHCLDJ_00542;CPJPGI_01560;DGLKOJ_00779;DMJFLM_01513;EKPLKB_01608;EOIIEI_01653;FIIMIJ_00381;FMDNFB_01289;FPBJNE_04642;FPPMFH_01000;GNFDFK_02141;GOALEL_04539;HBAILA_00880;HBKCOO_01422;IBBJOJ_01601;IECKKB_01063;IKDFAP_05424;JGNJAB_01570;JJNMLC_01055;JMFOKH_02187;JMKDJN_01303 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 9 | group_7316 | gene_presence_absence | rpsT | group_7316 | KPN_RS00095 | none confidence | rpsT | Colicin D immunity protein domain-containing protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 40.36 | 2.75 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.36; coverage=2.75 | 37 | 50 | 0.7400 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.49 | 28.7037 | 9.085-90.68 | 9.08545 | 90.6837 | 1.4e-12 | 19.6970 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7316 | AEOABF_05115;AHHNMN_04799;AHNHFK_05366;ANNNIK_05728;BEDDGA_05320;BLCKKP_05118;CBCBPB_05221;CHCLDJ_04971;CPJPGI_05037;DGLKOJ_05108;EKPLKB_03526;EOIIEI_05391;FIIMIJ_04948;FMDNFB_04660;FPBJNE_02811;FPPMFH_05394;GCNAEO_04949;GOALEL_04958;HBAILA_04948;HBKCOO_04854;IBBJOJ_04993;IECKKB_04999;JGNJAB_04996;JJNMLC_04691;JMFOKH_02490;KKELHE_05049;KNNKAF_04870;LEGHFF_02427;LGDJCA_02378;MDEGCH_04965 | 30S ribosomal protein S20 | ||
| 10 | group_3102 | gene_presence_absence | yiiM | group_3102 | KPN_RS22740 | none confidence | yiiM | 6-hydroxyaminopurine reductase | KPN_RS22740 | yiiM | 6-hydroxyaminopurine reductase | none | 34.78 | 2.83 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.78; coverage=2.83 | 42 | 50 | 0.8400 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.32 | 25 | 8.823-70.84 | 8.82327 | 70.8354 | 1.08e-12 | 19.6104 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4618979..4619653 | matched_representative_sequence=group_3102 | AEOABF_00913;AHHNMN_00516;AHNHFK_01922;ANNNIK_00780;BEDDGA_00653;BGGBBI_00337;BLCKKP_04433;CBCBPB_02168;CHCLDJ_00540;CPJPGI_01562;DDIAJH_00161;DGLKOJ_00777;EEHIAL_02108;EKPLKB_01606;EOIIEI_01651;FIIMIJ_00379;FMDNFB_01287;FPBJNE_04640;FPPMFH_00998;GOALEL_04541;HBAILA_00878;HBKCOO_01424;HPFPEC_00994;IBBJOJ_01603;IECKKB_01065;IILOJN_00625;IKDFAP_05422;JGNJAB_01568;JJNMLC_01057;JMFOKH_02189 | 6-hydroxyaminopurine reductase | ||
| 11 | group_3154 | gene_presence_absence | group_3154 | group_3154 | KPN_RS21990 | none confidence | group_3154 | DUF2612 domain-containing protein | KPN_RS21990 | GNAT family N-acetyltransferase | none | 36.27 | 2.06 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=36.27; coverage=2.06 | 39 | 50 | 0.7800 | 6 | 50 | 0.1200 | cases (blaKPC positive) | 3.26 | 23.5151 | 8.205-67.39 | 8.20477 | 67.3947 | 3.76e-12 | 18.9803 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4464485..4464931 | matched_representative_sequence=group_3154 | AEOABF_05501;AHHNMN_05340;AHNHFK_05594;ANNNIK_05343;BEDDGA_05650;BGGBBI_05089;BLCKKP_05610;CHCLDJ_05458;CPJPGI_05650;DGLKOJ_05482;EKPLKB_05328;EOIIEI_05314;FIIMIJ_05628;FMDNFB_05462;FPBJNE_05361;FPPMFH_05340;GCNAEO_02625;GOALEL_05307;HBAILA_05622;HBKCOO_05468;HGIJOB_05077;IBBJOJ_05454;IECKKB_05455;IKDFAP_04684;JGNJAB_05497;JJNMLC_05401;JMFOKH_05432;KKELHE_05564;KNNKAF_05328;LBJLPI_05304 | GNAT family N-acetyltransferase | |||
| 12 | group_6321 | gene_presence_absence | group_6321 | group_6321 | KPN_RS11890 | none confidence | group_6321 | Ead/Ea22-like family protein | KPN_RS11890 | YchJ family protein | none | 25.67 | 2.96 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=25.67; coverage=2.96 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2415655..2416113 | matched_representative_sequence=group_6321 | AEOABF_00919;AHHNMN_00522;AHNHFK_01928;ANNNIK_00774;BEDDGA_00659;BGGBBI_00343;BLCKKP_04427;CBCBPB_02162;CHCLDJ_00546;CPJPGI_01556;DGLKOJ_00783;EKPLKB_01612;EOIIEI_01657;FIIMIJ_00385;FMDNFB_01293;FPBJNE_04646;FPPMFH_01004;GOALEL_04535;HBAILA_00884;HBKCOO_01418;IBBJOJ_01597;IECKKB_01059;JGNJAB_01574;JJNMLC_01051;JMFOKH_02183;KKELHE_01687;KNNKAF_00546;LBJLPI_01210;LEGHFF_04606;LGDJCA_01095 | YchJ family protein | |||
| 13 | group_6208 | gene_presence_absence | fkpB | group_6208 | KPN_RS00115 | none confidence | fkpB | HNH endonuclease | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 36.29 | 1.51 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.29; coverage=1.51 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=group_6208 | AEOABF_00911;AHHNMN_00514;AHNHFK_01920;ANNNIK_00782;BEDDGA_00651;BGGBBI_00335;BLCKKP_04435;CBCBPB_02170;CHCLDJ_00538;CPJPGI_01564;DGLKOJ_00775;EKPLKB_01604;EOIIEI_01649;FIIMIJ_00377;FMDNFB_01285;FPBJNE_04638;FPPMFH_00996;GOALEL_04543;HBAILA_00876;HBKCOO_01426;IBBJOJ_01605;IECKKB_01067;JGNJAB_01566;JJNMLC_01059;JMFOKH_02191;KKELHE_01679;KNNKAF_00538;LBJLPI_01218;LEGHFF_04598;LGDJCA_01087 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 14 | group_5736 | gene_presence_absence | group_5736 | group_5736 | KPN_RS09930 | none confidence | group_5736 | DUF551 domain-containing protein | KPN_RS09930 | LysR family transcriptional regulator | none | 32.68 | 2.47 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.68; coverage=2.47 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2032600..2033493) | matched_representative_sequence=group_5736 | AEOABF_00916;AHHNMN_00519;AHNHFK_01925;ANNNIK_00777;BEDDGA_00656;BGGBBI_00340;BLCKKP_04430;CBCBPB_02165;CHCLDJ_00543;CPJPGI_01559;DGLKOJ_00780;EKPLKB_01609;EOIIEI_01654;FIIMIJ_00382;FMDNFB_01290;FPBJNE_04643;FPPMFH_01001;GOALEL_04538;HBAILA_00881;HBKCOO_01421;IBBJOJ_01600;IECKKB_01062;JGNJAB_01571;JJNMLC_01054;JMFOKH_02186;KKELHE_01684;KNNKAF_00543;LBJLPI_01213;LEGHFF_04603;LGDJCA_01092 | LysR family transcriptional regulator | |||
| 15 | group_5471 | gene_presence_absence | lamG | group_5471 | KPN_RS00045 | none confidence | lamG | LamG domain-containing protein | KPN_RS00045 | mog | molybdopterin adenylyltransferase | none | 36.36 | 1.37 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.36; coverage=1.37 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9316..9903 | matched_representative_sequence=group_5471 | AEOABF_05604;AHHNMN_05544;AHNHFK_05703;ANNNIK_05701;BEDDGA_05752;BGGBBI_05333;BLCKKP_05753;CBCBPB_02210;CHCLDJ_05715;CPJPGI_05830;DGLKOJ_05684;EKPLKB_05438;EOIIEI_05415;FIIMIJ_05869;FMDNFB_05586;FPBJNE_05516;FPPMFH_05460;GOALEL_05406;HBAILA_05829;HBKCOO_05692;IBBJOJ_05547;IECKKB_05544;JGNJAB_05635;JJNMLC_05618;JMFOKH_05564;KKELHE_05742;KNNKAF_05545;LBJLPI_05593;LEGHFF_05520;LGDJCA_05474 | molybdopterin adenylyltransferase | ||
| 16 | group_5096 | gene_presence_absence | iclR | group_5096 | KPN_RS23680 | none confidence | iclR | Ead/Ea22-like family protein | KPN_RS23680 | iclR | glyoxylate bypass operon transcriptionalrepressor IclR | none | 32.26 | 1.78 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.26; coverage=1.78 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(4812369..4813199) | matched_representative_sequence=group_5096 | AEOABF_00917;AHHNMN_00520;AHNHFK_01926;ANNNIK_00776;BEDDGA_00657;BGGBBI_00341;BLCKKP_04429;CBCBPB_02164;CHCLDJ_00544;CPJPGI_01558;DGLKOJ_00781;EKPLKB_01610;EOIIEI_01655;FIIMIJ_00383;FMDNFB_01291;FPBJNE_04644;FPPMFH_01002;GOALEL_04537;HBAILA_00882;HBKCOO_01420;IBBJOJ_01599;IECKKB_01061;JGNJAB_01572;JJNMLC_01053;JMFOKH_02185;KKELHE_01685;KNNKAF_00544;LBJLPI_01212;LEGHFF_04604;LGDJCA_01093 | glyoxylate bypass operon transcriptionalrepressor IclR | ||
| 17 | group_3125 | gene_presence_absence | group_3125 | group_3125 | KPN_RS32615 | none confidence | group_3125 | hypothetical protein | KPN_RS32615 | hypothetical protein | none | 22.51 | 2.41 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=22.51; coverage=2.41 | 36 | 50 | 0.7200 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.39 | 26.0115 | 8.294-81.58 | 8.2939 | 81.5778 | 5.7e-12 | 18.9452 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(308136..308372) | matched_representative_sequence=group_3125 | AEOABF_02480;AHHNMN_02072;AHNHFK_03205;ANNNIK_05184;BEDDGA_02387;BLCKKP_02512;CHCLDJ_04601;CPJPGI_04384;DGLKOJ_03700;EKPLKB_03056;EOIIEI_03766;FIIMIJ_05299;FMDNFB_00982;FPBJNE_01692;FPPMFH_01839;GCNAEO_05125;GOALEL_02229;HBAILA_02469;HBKCOO_02015;IBBJOJ_02481;IECKKB_02021;JGNJAB_02329;JJNMLC_02821;JMFOKH_02952;KKELHE_05385;KNNKAF_02815;LBJLPI_04995;LEGHFF_01010;LGDJCA_01500;MDEGCH_03284 | hypothetical protein | |||
| 18 | pemI | gene_presence_absence | pemI | pemI | KPN_RS12945 | none confidence | pemI | type II toxin-antitoxin system antitoxin PemI | KPN_RS12945 | RpiB/LacA/LacB family sugar-phosphate isomerase | none | 34.34 | 5.81 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.34; coverage=5.81 | 0 | 50 | 0.0000 | 24 | 50 | 0.4800 | controls (blaKPC negative) | -4.54 | 0.0107092 | 0.0006262-0.1831 | 0.000626197 | 0.18315 | 4.51e-10 | 18.8908 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2627909..2628547) | matched_representative_sequence=pemI | AIJMHO_04732;BMDOOG_04810;CCKLPP_04825;DDIAJH_05414;EANECB_05558;EDGMEC_05567;FFLFOK_04625;FLEPEF_04811;HABJKE_04725;HFMEMF_05425;IKNKDK_05466;JEGCDC_05444;KAFEBA_05372;KKNIEC_05507;KLPANJ_05548;KPDGKM_05572;LBJLPI_04383;MBNFKH_05525;MJEKEA_05554;OCFBPG_05473;OCGJJJ_05632;OHBKLB_04244;PKAHKO_05512;PMCEMD_05471 | RpiB/LacA/LacB family sugar-phosphate isomerase | |||
| 19 | group_7106 | gene_presence_absence | mog | group_7106 | KPN_RS00045 | none confidence | mog | mRNA interferase | KPN_RS00045 | mog | molybdopterin adenylyltransferase | none | 40.61 | 3.00 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.61; coverage=3.00 | 0 | 50 | 0.0000 | 24 | 50 | 0.4800 | controls (blaKPC negative) | -4.54 | 0.0107092 | 0.0006262-0.1831 | 0.000626197 | 0.18315 | 4.51e-10 | 18.8908 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9316..9903 | matched_representative_sequence=group_7106 | AIJMHO_04731;BMDOOG_04809;CCKLPP_04826;DDIAJH_05413;EANECB_05557;EDGMEC_05568;FFLFOK_04624;FLEPEF_04812;HABJKE_04724;HFMEMF_05426;IKNKDK_05465;JEGCDC_05445;KAFEBA_05373;KKNIEC_05508;KLPANJ_05549;KPDGKM_05571;LBJLPI_04382;MBNFKH_05526;MJEKEA_05555;OCFBPG_05472;OCGJJJ_05633;OHBKLB_04245;PKAHKO_05513;PMCEMD_05472 | molybdopterin adenylyltransferase | ||
| 20 | group_176 | gene_presence_absence | group_176 | group_176 | KPN_RS17500 | none confidence | group_176 | Uncharacterized protein;hypothetical protein | KPN_RS17500 | sugar porter family MFS transporter | none | 99.72 | 32.63 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=99.72; coverage=32.63 | 0 | 50 | 0.0000 | 24 | 50 | 0.4800 | controls (blaKPC negative) | -4.54 | 0.0107092 | 0.0006262-0.1831 | 0.000626197 | 0.18315 | 4.51e-10 | 18.8908 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3583569..3584990) | matched_representative_sequence=group_1767 | AIJMHO_04733;BMDOOG_04811;CCKLPP_04824;DDIAJH_05415;EANECB_05559;EDGMEC_05566;FFLFOK_04626;FLEPEF_04810;HABJKE_04726;HFMEMF_05424;IKNKDK_05467;JEGCDC_05443;KAFEBA_05371;KKNIEC_05506;KLPANJ_05547;KPDGKM_05573;LBJLPI_04384;MBNFKH_05524;MJEKEA_05553;OCFBPG_05474;OCGJJJ_05631;OHBKLB_04243;PKAHKO_05511;PMCEMD_05470 | sugar porter family MFS transporter | |||
| 21 | group_3603 | gene_presence_absence | group_3603 | group_3603 | KPN_RS02695 | none confidence | group_3603 | Phage protein | KPN_RS02695 | Gfo/Idh/MocA family protein | none | 31.37 | 4.64 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.37; coverage=4.64 | 40 | 50 | 0.8000 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.2 | 22.3714 | 7.985-62.67 | 7.98541 | 62.6744 | 4.88e-12 | 18.7952 | Panaroo/Bakta+GenBank | nucleotide_similarity | 556830..557861 | matched_representative_sequence=group_3603 | AEOABF_00105;AHHNMN_00105;AHNHFK_03001;ANNNIK_02143;BEDDGA_00232;BGGBBI_03099;BLCKKP_00105;CBCBPB_05484;CHCLDJ_00105;CPJPGI_00840;DGLKOJ_01163;DMJFLM_03271;EKPLKB_05236;EOIIEI_01254;FIIMIJ_00106;FMDNFB_00108;FPBJNE_01284;FPPMFH_00633;GCNAEO_00373;GNFDFK_04180;HBAILA_03160;HBKCOO_00105;IBBJOJ_00880;IECKKB_00105;IKDFAP_03172;JGNJAB_03234;JMFOKH_01466;JMKDJN_01835;KKELHE_00800;KNNKAF_00399 | Gfo/Idh/MocA family protein | |||
| 22 | group_2991 | gene_presence_absence | rpsT | group_2991 | KPN_RS00095 | none confidence | rpsT | 30S ribosomal protein S20 | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 37.09 | 5.19 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.09; coverage=5.19 | 40 | 50 | 0.8000 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.2 | 22.3714 | 7.985-62.67 | 7.98541 | 62.6744 | 4.88e-12 | 18.7952 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_2991 | AEOABF_00096;AHHNMN_00096;AHNHFK_03010;ANNNIK_02134;BEDDGA_00241;BGGBBI_03108;BLCKKP_00096;CBCBPB_05493;CHCLDJ_00096;CPJPGI_00849;DGLKOJ_01154;DMJFLM_03278;EKPLKB_05245;EOIIEI_01263;FIIMIJ_00097;FMDNFB_00099;FPBJNE_01293;FPPMFH_00624;GCNAEO_00382;GNFDFK_04176;HBAILA_03151;HBKCOO_00096;IBBJOJ_00889;IECKKB_00096;IKDFAP_03179;JGNJAB_03243;JMFOKH_01475;JMKDJN_01842;KKELHE_00809;KNNKAF_00408 | 30S ribosomal protein S20 | ||
| 23 | group_4120 | gene_presence_absence | rpsT | group_4120 | KPN_RS00095 | none confidence | rpsT | DUF2474 domain-containing protein;hypothetical protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 41.06 | 4.23 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=41.06; coverage=4.23 | 42 | 50 | 0.8400 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.17 | 21.8421 | 7.88-60.54 | 7.88044 | 60.5395 | 5.55e-12 | 18.7047 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_4120 | AENLJA_03579;AEOABF_00927;AHHNMN_00530;AHNHFK_01936;AIJMHO_05103;ANNNIK_00766;BEDDGA_00667;BGGBBI_00351;BLCKKP_04419;CBCBPB_02154;CCKLPP_05120;CHCLDJ_00554;CPJPGI_01548;DGLKOJ_00791;EKPLKB_01620;EOIIEI_01665;FIIMIJ_00393;FLEPEF_05177;FMDNFB_01301;FPBJNE_04654;FPPMFH_01012;GNFDFK_02124;GOALEL_04527;HBAILA_00892;HBKCOO_01410;IBBJOJ_01589;IECKKB_01051;IILOJN_02200;JGNJAB_01582;JJNMLC_01043 | 30S ribosomal protein S20 | ||
| 24 | group_8717 | gene_presence_absence | dnaK | group_8717 | KPN_RS00070 | none confidence | dnaK | hypothetical protein;Bacteriophage protein;Prophage endo-N-neuraminidase | KPN_RS00070 | dnaK | molecular chaperone DnaK | none | 30.84 | 0.36 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.84; coverage=0.36 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | 13612..15528 | matched_representative_sequence=group_8717 | AEOABF_00872;AEOABF_05605;AHHNMN_02307;AHHNMN_05571;AHNHFK_05661;AHNHFK_05711;ANNNIK_05700;BEDDGA_00612;BEDDGA_05725;BGGBBI_05308;BLCKKP_03078;BLCKKP_04474;CBCBPB_02209_len;CHCLDJ_03125;CHCLDJ_05741;CPJPGI_01603;CPJPGI_03702;DGLKOJ_00736;DGLKOJ_05338;EKPLKB_05009;EKPLKB_05195;EOIIEI_05357;EOIIEI_05400;FIIMIJ_01901;FIIMIJ_05888;FMDNFB_05585;FPBJNE_04599;FPPMFH_00957;FPPMFH_03552;GCNAEO_02622_len | molecular chaperone DnaK | ||
| 25 | group_8318 | gene_presence_absence | budA | group_8318 | KPN_RS11095 | none confidence | budA | acetolactate decarboxylase | KPN_RS11095 | budA | acetolactate decarboxylase | none | 27.69 | 7.69 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.69; coverage=7.69 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2254526..2255305 | matched_representative_sequence=97_refound_1447 | 97_refound_1447;AENLJA_00541;AEOABF_00928;AHHNMN_00531;AHNHFK_01937;ANNNIK_00765;BEDDGA_00668;BGGBBI_00352;BLCKKP_04418;CBCBPB_02153;CHCLDJ_00555;CPJPGI_01547;DGLKOJ_00792;EKPLKB_01621;EOIIEI_01666;FIIMIJ_00394;FMDNFB_01302;FPBJNE_04655;FPPMFH_01013;GOALEL_04526;HBAILA_00893;HBKCOO_01409;IBBJOJ_01588;IECKKB_01050;JGNJAB_01583;JJNMLC_01042;JMFOKH_02174;KKELHE_01696;KNNKAF_00555;LBJLPI_01201 | acetolactate decarboxylase | ||
| 26 | group_7636 | gene_presence_absence | group_7636 | group_7636 | KPN_RS32305 | none confidence | group_7636 | DUF2575 domain-containing protein | KPN_RS32305 | DUF2575 domain-containing protein | none | 45.00 | 3.42 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=45.00; coverage=3.42 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | <19553..19758 | matched_representative_sequence=group_7636 | AENLJA_00543;AEOABF_00925;AHHNMN_00528;AHNHFK_01934;ANNNIK_00768;BEDDGA_00665;BGGBBI_00349;BLCKKP_04421;CBCBPB_02156;CHCLDJ_00552;CPJPGI_01550;DGLKOJ_00789;EKPLKB_01618;EOIIEI_01663;FIIMIJ_00391;FMDNFB_01299;FPBJNE_04652;FPPMFH_01010;GOALEL_04529;HBAILA_00890;HBKCOO_01412;IBBJOJ_01591;IECKKB_01053;JGNJAB_01580;JJNMLC_01045;JMFOKH_02177;JMKDJN_01315;KKELHE_01693;KNNKAF_00552;LBJLPI_01204 | DUF2575 domain-containing protein | |||
| 27 | group_6771 | gene_presence_absence | stpA | group_6771 | KPN_RS16070 | none confidence | stpA | DNA-binding protein H-NS | KPN_RS16070 | stpA | DNA-binding protein StpA | none | 36.18 | 4.20 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=36.18; coverage=4.20 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3298016..3298417) | matched_representative_sequence=38_refound_634 | 38_refound_634;AEOABF_05117;AHHNMN_04801;AHNHFK_05364;BEDDGA_05322;BGGBBI_05335;BLCKKP_05120;CBCBPB_05223;CHCLDJ_04969;CPJPGI_05035;DGLKOJ_05106;EKPLKB_03524;EOIIEI_05389;FIIMIJ_04950;FMDNFB_04658;FPBJNE_02813;FPPMFH_05392;GCNAEO_04951;GOALEL_04956;HBAILA_04946;HBKCOO_04856;IBBJOJ_04991;IECKKB_04997;JGNJAB_04998;JJNMLC_04689;JMFOKH_02488;KKELHE_05047;KNNKAF_04872;LEGHFF_02429;LGDJCA_02380 | DNA-binding protein StpA | ||
| 28 | group_5588 | gene_presence_absence | trpCF | group_5588 | KPN_RS06720 | none confidence | trpCF | Helix-turn-helix transcriptional regulator | KPN_RS06720 | trpCF | bifunctional indole-3-glycerol-phosphatesynthase TrpC/phosphoribosylanthranilate isomerase TrpF | none | 27.53 | 2.17 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.53; coverage=2.17 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1408179..1409537) | matched_representative_sequence=group_5588 | AENLJA_00542;AEOABF_00926;AHHNMN_00529;AHNHFK_01935;ANNNIK_00767;BEDDGA_00666;BGGBBI_00350;BLCKKP_04420;CBCBPB_02155;CHCLDJ_00553;CPJPGI_01549;DGLKOJ_00790;EKPLKB_01619;EOIIEI_01664;FIIMIJ_00392;FMDNFB_01300;FPBJNE_04653;FPPMFH_01011;GOALEL_04528;HBAILA_00891;HBKCOO_01411;IBBJOJ_01590;IECKKB_01052;JGNJAB_01581;JJNMLC_01044;JMFOKH_02176;JMKDJN_01316;KKELHE_01694;KNNKAF_00553;LBJLPI_01203 | bifunctional indole-3-glycerol-phosphatesynthase TrpC/phosphoribosylanthranilate isomerase TrpF | ||
| 29 | group_427 | gene_presence_absence | group_427 | group_427 | KPN_RS08475 | none confidence | group_427 | DMSO/selenate family reductase complex Bsubunit | KPN_RS08475 | DMSO/selenate family reductase complex Bsubunit | none | 43.77 | 2.67 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=43.77; coverage=2.67 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1755801..1756418) | matched_representative_sequence=group_4277 | AEOABF_05388;AHHNMN_02305;AHNHFK_05683;ANNNIK_05702;BEDDGA_05727;BGGBBI_05290;BLCKKP_03080;CBCBPB_02211;CHCLDJ_03123;CPJPGI_03704;DGLKOJ_05340;EKPLKB_05193;EOIIEI_05394;FIIMIJ_01903;FMDNFB_05577;FPBJNE_05285;FPPMFH_03554;GCNAEO_02620;GOALEL_03176;HBAILA_02859;HBKCOO_05264;IBBJOJ_03032;IECKKB_02499;JGNJAB_02945;JJNMLC_01638;JMFOKH_02982;KKELHE_03228;KNNKAF_05199;LBJLPI_01590;LEGHFF_03867 | DMSO/selenate family reductase complex Bsubunit | |||
| 30 | group_78 | gene_presence_absence | cspE | group_78 | KPN_RS21170 | high confidence | cspE | RNA chaperone/antiterminator CspA | KPN_RS21170 | cspE | RNA chaperone/antiterminator CspA | high | 100.00 | 100.00 | High-confidence GenBank-supported annotation. | identity=100.00; coverage=100.00 | 37 | 50 | 0.7400 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.24 | 22.9798 | 7.791-67.78 | 7.79118 | 67.7781 | 1.04e-11 | 18.5053 | Panaroo/Bakta+GenBank | nucleotide_exact_or_contained | 4296903..4297115 | matched_representative_sequence=group_7811 | AEOABF_05116;AHHNMN_04800;AHNHFK_05365;ANNNIK_05729;BEDDGA_05321;BGGBBI_05334;BLCKKP_05119;CBCBPB_05222;CHCLDJ_04970;CPJPGI_05036;DGLKOJ_05107;EKPLKB_03525;EOIIEI_05390;FIIMIJ_04949;FMDNFB_04659;FPBJNE_02812;FPPMFH_05393;GCNAEO_04950;GOALEL_04957;HBAILA_04947;HBKCOO_04855;IBBJOJ_04992;IECKKB_04998;JGNJAB_04997;JJNMLC_04690;JMFOKH_02489;KKELHE_05048;KNNKAF_04871;LEGHFF_02428;LGDJCA_02379 | RNA chaperone/antiterminator CspA | ||
| 31 | group_8778 | gene_presence_absence | group_8778 | group_8778 | KPN_RS11565 | none confidence | group_8778 | hypothetical protein;Sugar ABC transporter substrate-binding protein | KPN_RS11565 | efflux RND transporter periplasmic adaptorsubunit | none | 31.29 | 2.96 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.29; coverage=2.96 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2350882..2351991) | matched_representative_sequence=group_8778 | AIJMHO_04709;BMDOOG_04787;CCKLPP_04848;DDIAJH_05321;EANECB_05369;EDGMEC_05412;FFLFOK_04602;FLEPEF_04834;HABJKE_04702;HFMEMF_05218;JEGCDC_05400;KAFEBA_05292;KKNIEC_05259;KLPANJ_05463;KPDGKM_05430;LBJLPI_04360;MBNFKH_05121;MJEKEA_05293;OCFBPG_05234;OCGJJJ_05499;OHBKLB_04267;PKAHKO_05133;PMCEMD_05187 | efflux RND transporter periplasmic adaptorsubunit | |||
| 32 | ant2Ia | gene_presence_absence | ant(2'')-Ia | ant2Ia | KPN_RS22165 | none confidence | ant(2'')-Ia | aminoglycoside nucleotidyltransferase ANT(2'')-Ia | KPN_RS22165 | mnmE | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | none | 23.25 | 2.31 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=23.25; coverage=2.31 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4499853..4501217 | matched_representative_sequence=ant2Ia | AIJMHO_05590;BEDDGA_05742;BMDOOG_05376;CCKLPP_05407;EANECB_05555;EDGMEC_05562;FFLFOK_04556;FLEPEF_05505;HABJKE_04656;HFMEMF_05316;JEGCDC_05569;KAFEBA_05377;KKNIEC_05368;KLPANJ_05500;KPDGKM_05569;LBJLPI_05494;MBNFKH_05530;MJEKEA_05549;OCGJJJ_05698;OHBKLB_04313;PKAHKO_05307;PMCEMD_05346;PMCNJE_05901 | tRNA uridine-5-carboxymethylaminomethyl(34)synthesis GTPase MnmE | ||
| 33 | group_7834 | gene_presence_absence | rpsT | group_7834 | KPN_RS00095 | none confidence | rpsT | Phage protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 48.52 | 3.81 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=48.52; coverage=3.81 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7834 | AIJMHO_04727;BMDOOG_04805;CCKLPP_04830;DDIAJH_05339;EANECB_05351;EDGMEC_05394;FFLFOK_04620;FLEPEF_04816;HABJKE_04720;HFMEMF_05200;JEGCDC_05382;KAFEBA_05274;KKNIEC_05277;KLPANJ_05445;KPDGKM_05448;LBJLPI_04378;MBNFKH_05103;MJEKEA_05275;OCFBPG_05216;OCGJJJ_05517;OHBKLB_04249;PKAHKO_05151;PMCEMD_05205 | 30S ribosomal protein S20 | ||
| 34 | group_7768 | gene_presence_absence | rpsT | group_7768 | KPN_RS00095 | none confidence | rpsT | Inner membrane protein | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 42.24 | 3.20 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.24; coverage=3.20 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7768 | AIJMHO_04726;BMDOOG_04804;CCKLPP_04831;DDIAJH_05338;EANECB_05352;EDGMEC_05395;FFLFOK_04619;FLEPEF_04817;HABJKE_04719;HFMEMF_05201;JEGCDC_05383;KAFEBA_05275;KKNIEC_05276;KLPANJ_05446;KPDGKM_05447;LBJLPI_04377;MBNFKH_05104;MJEKEA_05276;OCFBPG_05217;OCGJJJ_05516;OHBKLB_04250;PKAHKO_05150;PMCEMD_05204 | 30S ribosomal protein S20 | ||
| 35 | group_7559 | gene_presence_absence | nfuA | group_7559 | KPN_RS20445 | none confidence | nfuA | HTH cro/C1-type domain-containing protein | KPN_RS20445 | nfuA | Fe-S biogenesis protein NfuA | none | 30.30 | 6.43 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=30.30; coverage=6.43 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4129821..4130396 | matched_representative_sequence=group_7559 | AIJMHO_04717;BMDOOG_04795;CCKLPP_04840;DDIAJH_05329;EANECB_05361;EDGMEC_05404;FFLFOK_04610;FLEPEF_04826;HABJKE_04710;HFMEMF_05210;JEGCDC_05392;KAFEBA_05284;KKNIEC_05267;KLPANJ_05455;KPDGKM_05438;LBJLPI_04368;MBNFKH_05113;MJEKEA_05285;OCFBPG_05226;OCGJJJ_05507;OHBKLB_04259;PKAHKO_05141;PMCEMD_05195 | Fe-S biogenesis protein NfuA | ||
| 36 | group_6627 | gene_presence_absence | impA | group_6627 | KPN_RS06330 | none confidence | impA | Protein impA | KPN_RS06330 | translesion error-prone DNA polymerase Vautoproteolytic subunit | none | 46.55 | 4.14 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.55; coverage=4.14 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1332862..1333281 | matched_representative_sequence=group_6627 | AIJMHO_04730;BMDOOG_04808;CCKLPP_04827;DDIAJH_05341;EANECB_05349;EDGMEC_05392;FFLFOK_04623;FLEPEF_04813;HABJKE_04723;HFMEMF_05198;JEGCDC_05380;KAFEBA_05272;KKNIEC_05279;KLPANJ_05443;KPDGKM_05450;LBJLPI_04381;MBNFKH_05101;MJEKEA_05273;OCFBPG_05214;OCGJJJ_05519;OHBKLB_04246;PKAHKO_05153;PMCEMD_05207 | translesion error-prone DNA polymerase Vautoproteolytic subunit | |||
| 37 | group_6436 | gene_presence_absence | ampE | group_6436 | KPN_RS00605 | none confidence | ampE | XRE family transcriptional regulator | KPN_RS00605 | ampE | beta-lactamase regulator AmpE | none | 35.81 | 3.33 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.81; coverage=3.33 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 131116..131970 | matched_representative_sequence=group_6436 | AIJMHO_04708;BMDOOG_04786;CCKLPP_04849;DDIAJH_05320;EANECB_05370;EDGMEC_05413;FFLFOK_04601;FLEPEF_04835;HABJKE_04701;HFMEMF_05219;JEGCDC_05401;KAFEBA_05293;KKNIEC_05258;KLPANJ_05464;KPDGKM_05429;LBJLPI_04359;MBNFKH_05122;MJEKEA_05294;OCFBPG_05235;OCGJJJ_05498;OHBKLB_04268;PKAHKO_05132;PMCEMD_05186 | beta-lactamase regulator AmpE | ||
| 38 | group_6063 | gene_presence_absence | norR | group_6063 | KPN_RS16320 | none confidence | norR | phospholipase D | KPN_RS16320 | norR | nitric oxide reductase transcriptional regulatorNorR | none | 22.03 | 2.84 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=22.03; coverage=2.84 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3337673..3339223) | matched_representative_sequence=group_6063 | AIJMHO_04710;BMDOOG_04788;CCKLPP_04847;DDIAJH_05322;EANECB_05368;EDGMEC_05411;FFLFOK_04603;FLEPEF_04833;HABJKE_04703;HFMEMF_05217;JEGCDC_05399;KAFEBA_05291;KKNIEC_05260;KLPANJ_05462;KPDGKM_05431;LBJLPI_04361;MBNFKH_05120;MJEKEA_05292;OCFBPG_05233;OCGJJJ_05500;OHBKLB_04266;PKAHKO_05134;PMCEMD_05188 | nitric oxide reductase transcriptional regulatorNorR | ||
| 39 | group_5969 | gene_presence_absence | gldA | group_5969 | KPN_RS22860 | none confidence | gldA | Restriction endonuclease type IV Mrr domain-containing protein | KPN_RS22860 | gldA | bifunctional L-1,2-propanedioldehydrogenase/glycerol dehydrogenase | none | 18.09 | 2.55 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=18.09; coverage=2.55 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(4643861..4644964) | matched_representative_sequence=group_5969 | AIJMHO_04716;BMDOOG_04794;CCKLPP_04841;DDIAJH_05328;EANECB_05362;EDGMEC_05405;FFLFOK_04609;FLEPEF_04827;HABJKE_04709;HFMEMF_05211;JEGCDC_05393;KAFEBA_05285;KKNIEC_05266;KLPANJ_05456;KPDGKM_05437;LBJLPI_04367;MBNFKH_05114;MJEKEA_05286;OCFBPG_05227;OCGJJJ_05506;OHBKLB_04260;PKAHKO_05140;PMCEMD_05194 | bifunctional L-1,2-propanedioldehydrogenase/glycerol dehydrogenase | ||
| 40 | tgtA5 | gene_presence_absence | tgtA5 | tgtA5 | KPN_RS10985 | none confidence | tgtA5 | TgtA5 cluster protein 2 | KPN_RS10985 | ABC transporter ATP-binding protein | none | 34.72 | 2.34 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.72; coverage=2.34 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2234528..2235358 | matched_representative_sequence=tgtA5 | AIJMHO_04725;BMDOOG_04803;CCKLPP_04832;DDIAJH_05337;EANECB_05353;EDGMEC_05396;FFLFOK_04618;FLEPEF_04818;HABJKE_04718;HFMEMF_05202;JEGCDC_05384;KAFEBA_05276;KKNIEC_05275;KLPANJ_05447;KPDGKM_05446;LBJLPI_04376;MBNFKH_05105;MJEKEA_05277;OCFBPG_05218;OCGJJJ_05515;OHBKLB_04251;PKAHKO_05149;PMCEMD_05203 | ABC transporter ATP-binding protein | |||
| 41 | group_5441 | gene_presence_absence | ldtA | group_5441 | KPN_RS13125 | none confidence | ldtA | Tyr recombinase domain-containing protein | KPN_RS13125 | ldtA | L,D-transpeptidase | none | 40.64 | 2.02 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=40.64; coverage=2.02 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2657066..2658007) | matched_representative_sequence=group_5441 | AIJMHO_04713;BMDOOG_04791;CCKLPP_04844;DDIAJH_05325;EANECB_05365;EDGMEC_05408;FFLFOK_04606;FLEPEF_04830;HABJKE_04706;HFMEMF_05214;JEGCDC_05396;KAFEBA_05288;KKNIEC_05263;KLPANJ_05459;KPDGKM_05434;LBJLPI_04364;MBNFKH_05117;MJEKEA_05289;OCFBPG_05230;OCGJJJ_05503;OHBKLB_04263;PKAHKO_05137;PMCEMD_05191 | L,D-transpeptidase | ||
| 42 | group_4642 | gene_presence_absence | parA | group_4642 | KPN_RS11685 | none confidence | parA | ParA | KPN_RS11685 | MetQ/NlpA family ABC transportersubstrate-binding protein | none | 34.12 | 1.54 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.12; coverage=1.54 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2376466..2377266 | matched_representative_sequence=group_4642 | AIJMHO_04712;BMDOOG_04790;CCKLPP_04845;DDIAJH_05324;EANECB_05366;EDGMEC_05409;FFLFOK_04605;FLEPEF_04831;HABJKE_04705;HFMEMF_05215;JEGCDC_05397;KAFEBA_05289;KKNIEC_05262;KLPANJ_05460;KPDGKM_05433;LBJLPI_04363;MBNFKH_05118;MJEKEA_05290;OCFBPG_05231;OCGJJJ_05502;OHBKLB_04264;PKAHKO_05136;PMCEMD_05190 | MetQ/NlpA family ABC transportersubstrate-binding protein | |||
| 43 | group_4043 | gene_presence_absence | rplY | group_4043 | KPN_RS14070 | none confidence | rplY | 50S ribosomal protein L25 | KPN_RS14070 | rplY | 50S ribosomal protein L25 | none | 27.59 | 2.56 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.59; coverage=2.56 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2875961..2876245 | matched_representative_sequence=group_4043 | AIJMHO_04721;BMDOOG_04799;CCKLPP_04836;DDIAJH_05332;EANECB_05358;EDGMEC_05401;FFLFOK_04614;FLEPEF_04822;HABJKE_04714;HFMEMF_05207;JEGCDC_05389;KAFEBA_05281;KKNIEC_05270;KLPANJ_05452;KPDGKM_05441;LBJLPI_04372;MBNFKH_05110;MJEKEA_05282;OCFBPG_05223;OCGJJJ_05510;OHBKLB_04255;PKAHKO_05144;PMCEMD_05198 | 50S ribosomal protein L25 | ||
| 44 | group_3529 | gene_presence_absence | group_3529 | group_3529 | KPN_RS16055 | none confidence | group_3529 | rhodanese family protein | KPN_RS16055 | rhodanese family protein | none | 34.55 | 4.20 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=34.55; coverage=4.20 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3296130..3296675 | matched_representative_sequence=group_3529 | AIJMHO_04722;BMDOOG_04800;CCKLPP_04835;DDIAJH_05334;EANECB_05356;EDGMEC_05399;FFLFOK_04615;FLEPEF_04821;HABJKE_04715;HFMEMF_05205;JEGCDC_05387;KAFEBA_05279;KKNIEC_05272;KLPANJ_05450;KPDGKM_05443;LBJLPI_04373;MBNFKH_05108;MJEKEA_05280;OCFBPG_05221;OCGJJJ_05512;OHBKLB_04254;PKAHKO_05146;PMCEMD_05200 | rhodanese family protein | |||
| 45 | relB | gene_presence_absence | dcuR | relB | KPN_RS08320 | none confidence | dcuR | RelB antitoxin | KPN_RS08320 | dcuR | two-component system response regulator DcuR | none | 28.67 | 1.25 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=28.67; coverage=1.25 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1725525..1726244) | matched_representative_sequence=relB | AIJMHO_04723;BMDOOG_04801;CCKLPP_04834;DDIAJH_05335;EANECB_05355;EDGMEC_05398;FFLFOK_04616;FLEPEF_04820;HABJKE_04716;HFMEMF_05204;JEGCDC_05386;KAFEBA_05278;KKNIEC_05273;KLPANJ_05449;KPDGKM_05444;LBJLPI_04374;MBNFKH_05107;MJEKEA_05279;OCFBPG_05220;OCGJJJ_05513;OHBKLB_04253;PKAHKO_05147;PMCEMD_05201 | two-component system response regulator DcuR | ||
| 46 | group_2511 | gene_presence_absence | fkpB | group_2511 | KPN_RS00115 | none confidence | fkpB | HNH endonuclease | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 39.96 | 1.65 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=39.96; coverage=1.65 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=group_2511 | AIJMHO_04719;BMDOOG_04797;CCKLPP_04838;DDIAJH_05331;EANECB_05359;EDGMEC_05402;FFLFOK_04612;FLEPEF_04824;HABJKE_04712;HFMEMF_05208;JEGCDC_05390;KAFEBA_05282;KKNIEC_05269;KLPANJ_05453;KPDGKM_05440;LBJLPI_04370;MBNFKH_05111;MJEKEA_05283;OCFBPG_05224;OCGJJJ_05509;OHBKLB_04257;PKAHKO_05143;PMCEMD_05197 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 47 | group_1719 | gene_presence_absence | group_1719 | group_1719 | KPN_RS24265 | none confidence | group_1719 | alpha-glucosidase/alpha-galactosidase | KPN_RS24265 | alpha-glucosidase/alpha-galactosidase | none | 12.83 | 3.50 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=12.83; coverage=3.50 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4930190..4931542 | matched_representative_sequence=group_1719 | AIJMHO_04715;BMDOOG_04793;CCKLPP_04842;DDIAJH_05327;EANECB_05363;EDGMEC_05406;FFLFOK_04608;FLEPEF_04828;HABJKE_04708;HFMEMF_05212;JEGCDC_05394;KAFEBA_05286;KKNIEC_05265;KLPANJ_05457;KPDGKM_05436;LBJLPI_04366;MBNFKH_05115;MJEKEA_05287;OCFBPG_05228;OCGJJJ_05505;OHBKLB_04261;PKAHKO_05139;PMCEMD_05193 | alpha-glucosidase/alpha-galactosidase | |||
| 48 | group_1608 | gene_presence_absence | rpsT | group_1608 | KPN_RS00095 | none confidence | rpsT | Helix-turn-helix transcriptional regulator | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 54.75 | 2.93 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=54.75; coverage=2.93 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_1608 | AIJMHO_04724;BMDOOG_04802;CCKLPP_04833;DDIAJH_05336;EANECB_05354;EDGMEC_05397;FFLFOK_04617;FLEPEF_04819;HABJKE_04717;HFMEMF_05203;JEGCDC_05385;KAFEBA_05277;KKNIEC_05274;KLPANJ_05448;KPDGKM_05445;LBJLPI_04375;MBNFKH_05106;MJEKEA_05278;OCFBPG_05219;OCGJJJ_05514;OHBKLB_04252;PKAHKO_05148;PMCEMD_05202 | 30S ribosomal protein S20 | ||
| 49 | group_1541 | gene_presence_absence | group_1541 | group_1541 | KPN_RS05655 | none confidence | group_1541 | phosphatase | KPN_RS05655 | phosphatase | none | 23.30 | 6.02 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=23.30; coverage=6.02 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1207081..1207818 | matched_representative_sequence=group_1541 | AIJMHO_04714;BMDOOG_04792;CCKLPP_04843;DDIAJH_05326;EANECB_05364;EDGMEC_05407;FFLFOK_04607;FLEPEF_04829;HABJKE_04707;HFMEMF_05213;JEGCDC_05395;KAFEBA_05287;KKNIEC_05264;KLPANJ_05458;KPDGKM_05435;LBJLPI_04365;MBNFKH_05116;MJEKEA_05288;OCFBPG_05229;OCGJJJ_05504;OHBKLB_04262;PKAHKO_05138;PMCEMD_05192 | phosphatase | |||
| 50 | group_1190 | gene_presence_absence | group_1190 | group_1190 | KPN_RS11085 | none confidence | group_1190 | Plasmid stability family protein | KPN_RS11085 | 3-hydroxybutyrate dehydrogenase | none | 17.28 | 3.38 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=17.28; coverage=3.38 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2252757..2253527 | matched_representative_sequence=group_1190 | AIJMHO_04711;BMDOOG_04789;CCKLPP_04846;DDIAJH_05323;EANECB_05367;EDGMEC_05410;FFLFOK_04604;FLEPEF_04832;HABJKE_04704;HFMEMF_05216;JEGCDC_05398;KAFEBA_05290;KKNIEC_05261;KLPANJ_05461;KPDGKM_05432;LBJLPI_04362;MBNFKH_05119;MJEKEA_05291;OCFBPG_05232;OCGJJJ_05501;OHBKLB_04265;PKAHKO_05135;PMCEMD_05189 | 3-hydroxybutyrate dehydrogenase | |||
| 51 | umuC | gene_presence_absence | umuC; | umuC | KPN_RS00060 | none confidence | umuC; | DNA polymerase V subunit UmuC;DNA polymerase IV | KPN_RS00060 | msyB | acidic protein MsyB | none | 32.12 | 0.77 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=32.12; coverage=0.77 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12045..12794) | matched_representative_sequence=umuC | AIJMHO_04728;AIJMHO_04729;BMDOOG_04806;BMDOOG_04807;CCKLPP_04828;CCKLPP_04829;DDIAJH_05340;EANECB_05350;EDGMEC_05393;FFLFOK_04621;FFLFOK_04622;FLEPEF_04814;FLEPEF_04815;HABJKE_04721;HABJKE_04722;HFMEMF_05199;JEGCDC_05381;KAFEBA_05273;KKNIEC_05278;KLPANJ_05444;KPDGKM_05449;LBJLPI_04379;LBJLPI_04380;MBNFKH_05102;MJEKEA_05274;OCFBPG_05215;OCGJJJ_05518;OHBKLB_04247;OHBKLB_04248;PKAHKO_05152 | acidic protein MsyB | ||
| 52 | group_179 | gene_presence_absence | group_179 | group_179 | KPN_RS03200 | none confidence | group_179 | Asparaginyl-tRNA synthetase | KPN_RS03200 | L-fucose/L-arabinose isomerase family protein | none | 97.32 | 12.83 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=97.32; coverage=12.83 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(668542..669960) | matched_representative_sequence=group_1791 | AIJMHO_04718;BMDOOG_04796;CCKLPP_04839;DDIAJH_05330;EANECB_05360;EDGMEC_05403;FFLFOK_04611;FLEPEF_04825;HABJKE_04711;HFMEMF_05209;JEGCDC_05391;KAFEBA_05283;KKNIEC_05268;KLPANJ_05454;KPDGKM_05439;LBJLPI_04369;MBNFKH_05112;MJEKEA_05284;OCFBPG_05225;OCGJJJ_05508;OHBKLB_04258;PKAHKO_05142;PMCEMD_05196 | L-fucose/L-arabinose isomerase family protein | |||
| 53 | group_26 | gene_presence_absence | KPN_RS10465-like (group_26) | group_26 | KPN_RS10465 | medium confidence | group_26 | Lipoprotein | KPN_RS10465 | glucan biosynthesis protein D | medium | 94.49 | 71.33 | Medium-confidence locus-level GenBank rescue. | identity=94.49; coverage=71.33 | 0 | 50 | 0.0000 | 23 | 50 | 0.4600 | controls (blaKPC negative) | -4.46 | 0.0115863 | 0.0006773-0.1982 | 0.000677312 | 0.198197 | 1.32e-09 | 18.3109 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2139574..2141229) | matched_representative_sequence=group_2670 | AIJMHO_04707;BMDOOG_04785;CCKLPP_04850;DDIAJH_05319;EANECB_05371;EDGMEC_05414;FFLFOK_04600;FLEPEF_04836;HABJKE_04700;HFMEMF_05220;JEGCDC_05402;KAFEBA_05294;KKNIEC_05257;KLPANJ_05465;KPDGKM_05428;LBJLPI_04358;MBNFKH_05123;MJEKEA_05295;OCFBPG_05236;OCGJJJ_05497;OHBKLB_04269;PKAHKO_05131;PMCEMD_05185 | glucan biosynthesis protein D | |||
| 54 | pilS | gene_presence_absence | satP | pilS | KPN_RS00055 | none confidence | satP | Type 4 secretion system PilS N-terminal domain-containing protein | KPN_RS00055 | satP | acetate uptake transporter | none | 35.53 | 1.40 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.53; coverage=1.40 | 35 | 50 | 0.7000 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.29 | 23.6667 | 7.593-73.77 | 7.59315 | 73.7654 | 2.2e-11 | 18.2224 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(11390..11956) | matched_representative_sequence=pilS | AEOABF_02510;AHHNMN_04813;AHNHFK_05232;BEDDGA_05335;BLCKKP_05132;CHCLDJ_04956;CPJPGI_05023;DGLKOJ_03405;EKPLKB_03512;EOIIEI_04976;FIIMIJ_04963;FMDNFB_04646;FPBJNE_02825;FPPMFH_03434;GCNAEO_05658;GOALEL_04944;HBAILA_04933;HBKCOO_04868;IBBJOJ_04979;IECKKB_04985;JGNJAB_05011;JJNMLC_04677;JMFOKH_02475;KKELHE_05035;KNNKAF_04884;LEGHFF_02441;LGDJCA_02392;MDEGCH_05363;MGKJKL_05105;MKNMNF_02208 | acetate uptake transporter | ||
| 55 | group_4750 | gene_presence_absence | group_4750 | group_4750 | KPN_RS32350 | none confidence | group_4750 | hypothetical protein | KPN_RS32350 | hypothetical protein | none | 17.97 | 1.59 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=17.97; coverage=1.59 | 35 | 50 | 0.7000 | 4 | 50 | 0.0800 | cases (blaKPC positive) | 3.29 | 23.6667 | 7.593-73.77 | 7.59315 | 73.7654 | 2.2e-11 | 18.2224 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1328981..1329137) | matched_representative_sequence=group_4750 | 0_refound_0_pseudo;38_refound_635_pseudo;AEOABF_02507;AHHNMN_02099;BLCKKP_02485;CHCLDJ_04628;CPJPGI_04357;DGLKOJ_03727;EKPLKB_03083;EOIIEI_03792;FIIMIJ_05272;FMDNFB_00955;FPBJNE_01719;GCNAEO_05152;GOALEL_05348;HBAILA_02442;HBKCOO_01988;IBBJOJ_02454;IECKKB_01994;JGNJAB_02302;JJNMLC_05502;JMFOKH_02979;KKELHE_05412;KNNKAF_02842;LBJLPI_04968;LEGHFF_01037;LGDJCA_01527;MDEGCH_03311;MGKJKL_02615;MKNMNF_01619 | hypothetical protein | |||
| 56 | tacA2 | gene_presence_absence | alkA | tacA2 | KPN_RS13555 | none confidence | alkA | Antitoxin TacA2 | KPN_RS13555 | alkA | DNA-3-methyladenine glycosylase 2 | none | 33.42 | 5.10 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=33.42; coverage=5.10 | 44 | 50 | 0.8800 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2754736..2755584) | matched_representative_sequence=tacA2 | AENLJA_04546;AEOABF_00608;AHHNMN_01121;AHNHFK_00292;ANNNIK_01117;BEDDGA_04393;BGGBBI_05301;BLCKKP_02064;CBCBPB_02318;CEPDLH_01633;CHCLDJ_01670;CPJPGI_00269;DFFEKE_03143;DGLKOJ_01612;EKPLKB_01303;EOIIEI_00776;FFLFOK_02961;FIIMIJ_00744;FMDNFB_00664;FPBJNE_00062;FPPMFH_00264;GCNAEO_00665;GOALEL_00292;HABJKE_03108;HBAILA_00269;HBKCOO_00853;IBBJOJ_00268;IECKKB_01142;IKDFAP_04084;JAIKEL_05034 | DNA-3-methyladenine glycosylase 2 | ||
| 57 | group_6402 | gene_presence_absence | mog | group_6402 | KPN_RS00045 | none confidence | mog | tRNA-acetylating toxin 2 | KPN_RS00045 | mog | molybdopterin adenylyltransferase | none | 43.58 | 2.26 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=43.58; coverage=2.26 | 44 | 50 | 0.8800 | 12 | 50 | 0.2400 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | 9316..9903 | matched_representative_sequence=group_6402 | AENLJA_04545;AEOABF_00607;AHHNMN_01120;AHNHFK_00293;ANNNIK_01118;BEDDGA_04392;BGGBBI_05302;BLCKKP_02065;CBCBPB_02319;CEPDLH_01632;CHCLDJ_01669;CPJPGI_00268;DFFEKE_03142;DGLKOJ_01613;EKPLKB_01302;EOIIEI_00775;FFLFOK_02960;FIIMIJ_00745;FMDNFB_00663;FPBJNE_00063;FPPMFH_00263;GCNAEO_00664;GOALEL_00293;HABJKE_03107;HBAILA_00268;HBKCOO_00854;IBBJOJ_00267;IECKKB_01141;IKDFAP_04085;JAIKEL_05033 | molybdopterin adenylyltransferase | ||
| 58 | group_8439 | gene_presence_absence | group_8439 | group_8439 | KPN_RS00050 | none confidence | group_8439 | hypothetical protein;Lipoprotein | KPN_RS00050 | MFS transporter | none | 37.12 | 1.33 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.12; coverage=1.33 | 38 | 50 | 0.7600 | 6 | 50 | 0.1200 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | 10023..11327 | matched_representative_sequence=group_8439 | AEOABF_02495;AHHNMN_02087;AHNHFK_03220;ANNNIK_05488;BEDDGA_02372;BGGBBI_05036;BLCKKP_02497;CBCBPB_05393;CHCLDJ_04616;CPJPGI_04369;DGLKOJ_03715;DMJFLM_00725;EKPLKB_03071;EOIIEI_03781;FIIMIJ_05284;FMDNFB_00967;FPBJNE_01707;FPPMFH_01824;GCNAEO_05140;GOALEL_05250;HBAILA_02454;HBKCOO_02000;IBBJOJ_02466;IECKKB_02006;JGNJAB_02314;JJNMLC_02806;JMFOKH_02967;KKELHE_05400;KNNKAF_02830;LBJLPI_04980 | MFS transporter | |||
| 59 | group_5954 | gene_presence_absence | group_5954 | group_5954 | KPN_RS23565 | none confidence | group_5954 | Rsd/AlgQ family anti-sigma factor | KPN_RS23565 | Rsd/AlgQ family anti-sigma factor | none | 32.23 | 2.69 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.23; coverage=2.69 | 38 | 50 | 0.7600 | 6 | 50 | 0.1200 | cases (blaKPC positive) | 3.15 | 21.0862 | 7.443-59.74 | 7.44279 | 59.7391 | 1.62e-11 | 18.1887 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(4788464..4788961) | matched_representative_sequence=group_5954 | 33_refound_555_pseudo;AEOABF_04638;AHHNMN_04960;AHNHFK_03434;ANNNIK_02023;BEDDGA_04239;BGGBBI_02071;BLCKKP_01181;CBCBPB_01040;CHCLDJ_05182;CPJPGI_00959;DGLKOJ_00722;EKPLKB_04153;EOIIEI_00751;FIIMIJ_01025;FMDNFB_03542;FPBJNE_02019;FPPMFH_03169;GCNAEO_02953;GOALEL_01627;HBAILA_00860;HBKCOO_00492;IBBJOJ_01284;IECKKB_00746;JGNJAB_00919;JJNMLC_01387;JMFOKH_01585;KKELHE_01340;KNNKAF_05084;LBJLPI_02293 | Rsd/AlgQ family anti-sigma factor | |||
| 60 | group_3166 | gene_presence_absence | srlA | group_3166 | KPN_RS15830 | none confidence | srlA | Transcriptional regulator | KPN_RS15830 | srlA | PTS glucitol/sorbitol transporter subunit IIC | none | 27.42 | 6.76 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=27.42; coverage=6.76 | 43 | 50 | 0.8600 | 11 | 50 | 0.2200 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3243459..3243980 | matched_representative_sequence=23_refound_439 | 23_refound_439;ACMLHL_00640;AENLJA_00544;AEOABF_00924;AHHNMN_00527;AHNHFK_01933;ANNNIK_00769;BEDDGA_00664;BGGBBI_00348;BLCKKP_04422;BMDOOG_05170;CBCBPB_02157;CHCLDJ_00551;CPJPGI_01551;DDIAJH_00175;DGLKOJ_00788;DMJFLM_01502;EEHIAL_02096;EKPLKB_01617;EOIIEI_01662;FIIMIJ_00390;FMDNFB_01298;FPBJNE_04651;FPPMFH_01009;GNFDFK_02128;GOALEL_04530;HBAILA_00889;HBKCOO_01413;HPFPEC_00982;IBBJOJ_01592 | PTS glucitol/sorbitol transporter subunit IIC | ||
| 61 | group_7989 | gene_presence_absence | cueR | group_7989 | KPN_RS02475 | none confidence | cueR | Cu(I)-responsive transcriptional regulator | KPN_RS02475 | cueR | Cu(I)-responsive transcriptional regulator | none | 38.33 | 9.52 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.33; coverage=9.52 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 513976..514386 | matched_representative_sequence=group_7989 | AEOABF_02497;AHHNMN_02089;AHNHFK_03222;ANNNIK_05490;BEDDGA_05690;BGGBBI_05038;BLCKKP_02495;CBCBPB_05395;CHCLDJ_04618;CPJPGI_04367;DGLKOJ_03717;DMJFLM_00723;EKPLKB_03073;EOIIEI_03783;FIIMIJ_05282;FMDNFB_00965;FPBJNE_01709;FPPMFH_01822;GCNAEO_05142;GHEABH_04194;GOALEL_05248;HBAILA_02452;HBKCOO_01998;IBBJOJ_02464;IECKKB_02004;JGNJAB_02312;JJNMLC_02804;JMFOKH_02969;KKELHE_05402;KNNKAF_02832 | Cu(I)-responsive transcriptional regulator | ||
| 62 | group_7831 | gene_presence_absence | dnaQ | group_7831 | KPN_RS01225 | none confidence | dnaQ | Excisionase | KPN_RS01225 | dnaQ | DNA polymerase III subunit epsilon | none | 8.28 | 7.14 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=8.28; coverage=7.14 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 263239..263970 | matched_representative_sequence=group_7831 | AEOABF_00092;AHHNMN_00092;AHNHFK_03014;ANNNIK_02130;BEDDGA_00245;BGGBBI_03112;BLCKKP_00092;CBCBPB_05497;CHCLDJ_00092;CPJPGI_00853;DGLKOJ_01150;DMJFLM_03282;EKPLKB_05249;EOIIEI_01267;FIIMIJ_00093;FMDNFB_00095;FPBJNE_01297;FPPMFH_00620;GCNAEO_00386;HBAILA_03147;HBKCOO_00092;IBBJOJ_00893;IECKKB_00092;IKDFAP_03183;JGNJAB_03247;JMFOKH_01479;JMKDJN_01846;KKELHE_00813;KNNKAF_00412;LBJLPI_05360 | DNA polymerase III subunit epsilon | ||
| 63 | group_5340 | gene_presence_absence | dnaT | group_5340 | KPN_RS25960 | high confidence | dnaT | DnaT DNA-binding domain-containing protein | KPN_RS25960 | dnaT | primosomal protein DnaT | high | 100.0 | 100.0 | High-confidence GenBank-supported annotation. | identity=100.0; coverage=100.0 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | qualifier_exact | complement(5272196..5272735) | AEOABF_00093;AHHNMN_00093;AHNHFK_03013;ANNNIK_02131;BEDDGA_00244;BGGBBI_03111;BLCKKP_00093;CBCBPB_05496;CHCLDJ_00093;CPJPGI_00852;DGLKOJ_01151;DMJFLM_03281;EKPLKB_05248;EOIIEI_01266;FIIMIJ_00094;FMDNFB_00096;FPBJNE_01296;FPPMFH_00621;GCNAEO_00385;HBAILA_03148;HBKCOO_00093;IBBJOJ_00892;IECKKB_00093;IKDFAP_03182;JGNJAB_03246;JMFOKH_01478;JMKDJN_01845;KKELHE_00812;KNNKAF_00411;LBJLPI_05359 | primosomal protein DnaT | |||
| 64 | group_5272 | gene_presence_absence | group_5272 | group_5272 | KPN_RS07845 | none confidence | group_5272 | Replication protein | KPN_RS07845 | RidA family protein | none | 28.83 | 1.91 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=28.83; coverage=1.91 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1624270..1624704 | matched_representative_sequence=group_5272 | AEOABF_00094;AHHNMN_00094;AHNHFK_03012;ANNNIK_02132;BEDDGA_00243;BGGBBI_03110;BLCKKP_00094;CBCBPB_05495;CHCLDJ_00094;CPJPGI_00851;DGLKOJ_01152;DMJFLM_03280;EKPLKB_05247;EOIIEI_01265;FIIMIJ_00095;FMDNFB_00097;FPBJNE_01295;FPPMFH_00622;GCNAEO_00384;HBAILA_03149;HBKCOO_00094;IBBJOJ_00891;IECKKB_00094;IKDFAP_03181;JGNJAB_03245;JMFOKH_01477;JMKDJN_01844;KKELHE_00811;KNNKAF_00410;LBJLPI_05358 | RidA family protein | |||
| 65 | group_3204 | gene_presence_absence | prmB | group_3204 | KPN_RS14595 | none confidence | prmB | LF-82 | KPN_RS14595 | prmB | 50S ribosomal protein L3 N(5)-glutaminemethyltransferase | none | 21.16 | 5.81 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=21.16; coverage=5.81 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2990106..2991038) | matched_representative_sequence=group_3204 | AEOABF_00106;AHHNMN_00106;AHNHFK_03000;ANNNIK_02144;BEDDGA_00231;BGGBBI_03098;BLCKKP_00106;CBCBPB_05483;CHCLDJ_00106;CPJPGI_00839;DGLKOJ_01164;DMJFLM_03270;EKPLKB_05146;EOIIEI_01253;FIIMIJ_00107;FMDNFB_00109;FPBJNE_01283;FPPMFH_00634;GCNAEO_00372;HBAILA_03161;HBKCOO_00106;IBBJOJ_00879;IECKKB_00106;IKDFAP_03171;JGNJAB_03233;JMFOKH_01465;JMKDJN_01834;KKELHE_00799;KNNKAF_00398;LBJLPI_05346 | 50S ribosomal protein L3 N(5)-glutaminemethyltransferase | ||
| 66 | group_2450 | gene_presence_absence | group_2450 | group_2450 | KPN_RS18675 | none confidence | group_2450 | phage tail protein | KPN_RS18675 | phage tail protein | none | 38.29 | 2.12 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=38.29; coverage=2.12 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(3810023..3811180) | matched_representative_sequence=group_2450 | AEOABF_02472;AHHNMN_02064;AHNHFK_03197;ANNNIK_02477;BEDDGA_02395;BGGBBI_03230;BLCKKP_02520;CBCBPB_05615;CHCLDJ_04593;CPJPGI_04392;DGLKOJ_03692;EKPLKB_03048;EOIIEI_03758;FIIMIJ_02283;FMDNFB_00990;FPBJNE_01684;FPPMFH_01847;GCNAEO_04400;GOALEL_02221;HBAILA_02477;HBKCOO_02023;IBBJOJ_02489;IECKKB_02029;IKDFAP_04813;JGNJAB_02337;JJNMLC_02829;JMFOKH_02944;JMKDJN_00225;KKELHE_02908;KNNKAF_02807 | phage tail protein | |||
| 67 | dinI | gene_presence_absence | dinI | dinI | KPN_RS32185 | high confidence | dinI | DinI family protein | KPN_RS32185 | dinI | DNA damage-inducible protein I | high | 100.0 | 100.0 | High-confidence GenBank-supported annotation. | identity=100.0; coverage=100.0 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | qualifier_exact | complement(1222172..1222423) | AEOABF_02496;AHHNMN_02088;AHNHFK_03221;ANNNIK_05489;BEDDGA_05691;BGGBBI_05037;BLCKKP_02496;CBCBPB_05394;CHCLDJ_04617;CPJPGI_04368;DGLKOJ_03716;DMJFLM_00724;EKPLKB_03072;EOIIEI_03782;FIIMIJ_05283;FMDNFB_00966;FPBJNE_01708;FPPMFH_01823;GCNAEO_05141;GHEABH_04193;GOALEL_05249;HBAILA_02453;HBKCOO_01999;IBBJOJ_02465;IECKKB_02005;JGNJAB_02313;JJNMLC_02805;JMFOKH_02968;KKELHE_05401;KNNKAF_02831 | DNA damage-inducible protein I | |||
| 68 | group_2202 | gene_presence_absence | yaaA | group_2202 | KPN_RS00030 | none confidence | yaaA | Bacteriophage replication gene A protein (GPA) | KPN_RS00030 | yaaA | peroxide stress protein YaaA | none | 29.41 | 0.46 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.41; coverage=0.46 | 39 | 50 | 0.7800 | 7 | 50 | 0.1400 | cases (blaKPC positive) | 3.08 | 19.9217 | 7.214-55.01 | 7.21397 | 55.0149 | 2.18e-11 | 17.9778 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(5779..6552) | matched_representative_sequence=group_2202 | AEOABF_02498;AHHNMN_02090;AHNHFK_03223;ANNNIK_05491;BEDDGA_05689;BGGBBI_05197;BLCKKP_02494;CBCBPB_05396;CHCLDJ_04619;CPJPGI_04366;DGLKOJ_03718;DMJFLM_00722;EKPLKB_03074;EOIIEI_03784;FIIMIJ_05281;FMDNFB_00964;FPBJNE_01710;FPPMFH_01821;GCNAEO_05143;GHEABH_04195;GOALEL_05340;HBAILA_02451;HBKCOO_01997;IBBJOJ_02463;IECKKB_02003;JGNJAB_02311;JJNMLC_05511;JMFOKH_02970;KKELHE_05403;KNNKAF_02833 | peroxide stress protein YaaA | ||
| 69 | group_6834 | gene_presence_absence | ridA | group_6834 | KPN_RS25090 | high confidence | ridA | RidA family protein | KPN_RS25090 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | high | 100.0 | 100.0 | High-confidence GenBank-supported annotation. | identity=100.0; coverage=100.0 | 40 | 50 | 0.8000 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.04 | 19.2857 | 7.084-52.5 | 7.08396 | 52.5043 | 2.59e-11 | 17.8562 | Panaroo/Bakta+GenBank | qualifier_exact | complement(5088741..5089127) | AENLJA_03519;AEOABF_02532;AHHNMN_01448;AHNHFK_05254;ANNNIK_05582;BEDDGA_00503;BGGBBI_05240;BLCKKP_04925;CBCBPB_03803;CEPDLH_00771;CHCLDJ_02115;CPJPGI_04864;DGLKOJ_03427;DMJFLM_00837;EKPLKB_03490;EOIIEI_04954;FIIMIJ_04862;FMDNFB_04624;FPBJNE_02847;FPPMFH_03412;GCNAEO_04606;GOALEL_02500;HBAILA_04821;HBKCOO_05189;IBBJOJ_04808;IECKKB_04914;JGNJAB_04909;JJNMLC_02625;JMFOKH_02453;KKELHE_04964 | 2-iminobutanoate/2-iminopropanoate deaminase | |||
| 70 | group_4280 | gene_presence_absence | lldD | group_4280 | KPN_RS21315 | none confidence | lldD | Bacteriophage protein | KPN_RS21315 | lldD | FMN-dependent L-lactate dehydrogenase LldD | none | 8.59 | 3.17 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=8.59; coverage=3.17 | 40 | 50 | 0.8000 | 8 | 50 | 0.1600 | cases (blaKPC positive) | 3.04 | 19.2857 | 7.084-52.5 | 7.08396 | 52.5043 | 2.59e-11 | 17.8562 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4331409..4332593 | matched_representative_sequence=group_4280 | AENLJA_00579;AEOABF_05419;AHHNMN_02820;AHNHFK_05469;ANNNIK_04524;BEDDGA_03764;BGGBBI_04865;BLCKKP_03386;CHCLDJ_03827;CPJPGI_03144;DGLKOJ_04932;EKPLKB_03088;EOIIEI_04288;FIIMIJ_05494;FMDNFB_05377;FPBJNE_03612;FPPMFH_02742;GCNAEO_05364;GOALEL_04722;HBAILA_04441;HBKCOO_03459;HGIJOB_05061;HPFPEC_01013;IBBJOJ_05387;IECKKB_05377;IKDFAP_04700;JGNJAB_03343;JJNMLC_03289;JMFOKH_04731;KKELHE_03235 | FMN-dependent L-lactate dehydrogenase LldD | ||
| 71 | group_7299 | gene_presence_absence | npr | group_7299 | KPN_RS19580 | none confidence | npr | Ren exclusion protein | KPN_RS19580 | npr | PTS phosphocarrier protein NPr | none | 29.28 | 5.10 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.28; coverage=5.10 | 41 | 50 | 0.8200 | 9 | 50 | 0.1800 | cases (blaKPC positive) | 3.03 | 19.0831 | 7.042-51.71 | 7.04178 | 51.7149 | 2.75e-11 | 17.8149 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3971250..3971522 | matched_representative_sequence=group_7299 | ACMLHL_00637;AEOABF_00920;AHHNMN_00523;AHNHFK_01929;ANNNIK_00773;BEDDGA_00660;BGGBBI_00344;BLCKKP_04426;BMDOOG_05167;CBCBPB_02161;CHCLDJ_00547;CPJPGI_01555;DGLKOJ_00784;DMJFLM_01506;EKPLKB_01613;EOIIEI_01658;FIIMIJ_00386;FMDNFB_01294;FPBJNE_04647;FPPMFH_01005;GOALEL_04534;HBAILA_00885;HBKCOO_01417;IBBJOJ_01596;IECKKB_01058;IILOJN_03544;JGNJAB_01575;JJNMLC_01050;JKABKE_01287;JMFOKH_02182 | PTS phosphocarrier protein NPr | ||
| 72 | spnT | gene_presence_absence | ;spnT | spnT | KPN_RS23390 | none confidence | ;spnT | hypothetical protein;SpnT protein | KPN_RS23390 | IMPACT family protein | none | 18.46 | 1.08 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=18.46; coverage=1.08 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4752182..4752796 | matched_representative_sequence=spnT | AEOABF_02514;AHHNMN_01390;AHNHFK_05236;ANNNIK_05100;BEDDGA_00607;BLCKKP_04943;CHCLDJ_02173;CPJPGI_04846;DGLKOJ_03409;EKPLKB_03508;EOIIEI_04972;FIIMIJ_04844;FMDNFB_04642;FPBJNE_02829;FPPMFH_03430;GCNAEO_04624;GOALEL_02482;HBAILA_04803;HBKCOO_05171;IBBJOJ_04790;IECKKB_04896;JGNJAB_04927;JJNMLC_04673;JMFOKH_02471;KKELHE_04946;KNNKAF_02146;LBJLPI_02853;LEGHFF_02445;LGDJCA_02396;MDEGCH_05050 | IMPACT family protein | |||
| 73 | group_8315 | gene_presence_absence | group_8315 | group_8315 | no_reference_locus | none confidence | group_8315 | hypothetical protein | none | No confident reference gene assignment; report the stable Panaroo cluster ID. | no sequence identity/coverage evidence available | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta | none | No confident GenBank reference match found. The cluster may be accessory, divergent, absent from the reference, or not represented in Panaroo sequence outputs. | AEOABF_05407;AHHNMN_02832;AHNHFK_05481;ANNNIK_04512;BEDDGA_03752;BGGBBI_04853;BLCKKP_03374;CHCLDJ_03815;CPJPGI_03156;DGLKOJ_04944;EKPLKB_03100;EOIIEI_04300;FIIMIJ_05482;FMDNFB_05365;FPBJNE_03624;FPPMFH_02754;GCNAEO_05376;GOALEL_04734;HBAILA_04453;HBKCOO_03447;IBBJOJ_05375;IECKKB_05389;JGNJAB_03355;JJNMLC_03277;JMFOKH_04743;KKELHE_03247;KNNKAF_03836;LBJLPI_03988;LEGHFF_03886;LGDJCA_04411 | hypothetical protein | ||||||||
| 74 | group_8125 | gene_presence_absence | group_8125 | group_8125 | KPN_RS00065 | none confidence | group_8125 | Bacteriophage protein | KPN_RS00065 | DUF2541 family protein | none | 37.32 | 8.16 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.32; coverage=8.16 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12822..13226) | matched_representative_sequence=group_8125 | AEOABF_03050;AHHNMN_02850;AHNHFK_04853;ANNNIK_04493;BEDDGA_03733;BGGBBI_04882;BLCKKP_03355;CHCLDJ_03796;CPJPGI_03175;DGLKOJ_04963;EKPLKB_03118;EOIIEI_04318;FIIMIJ_03075;FMDNFB_04851;FPBJNE_03642;FPPMFH_02772;GCNAEO_03960;GOALEL_04752;HBAILA_04472;HBKCOO_03429;IBBJOJ_03634;IECKKB_03656;JGNJAB_03373;JJNMLC_03258;JMFOKH_04762;KKELHE_03266;KNNKAF_03818;LBJLPI_03970;LEGHFF_03904;LGDJCA_04430 | DUF2541 family protein | |||
| 75 | group_8111 | gene_presence_absence | group_8111 | group_8111 | KPN_RS12745 | none confidence | group_8111 | NTP pyrophosphohydrolase | KPN_RS12745 | YebG family protein | none | 32.34 | 9.80 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=32.34; coverage=9.80 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2586908..2587255) | matched_representative_sequence=20_refound_376 | 20_refound_376;26_refound_468;30_refound_527;36_refound_605;39_refound_647;45_refound_706;AEOABF_05490;AHHNMN_05351;AHNHFK_05583;ANNNIK_05354;BEDDGA_05661;BLCKKP_05599;CHCLDJ_05447;DGLKOJ_05471;EKPLKB_05317;EOIIEI_05303;FIIMIJ_05617;FMDNFB_05473;FPBJNE_05350;GOALEL_05318;HBAILA_05633;HBKCOO_05457;IBBJOJ_05443;JGNJAB_05486;JJNMLC_05390;JMFOKH_05443;KKELHE_05575;KNNKAF_05317;LBJLPI_05315;LEGHFF_05366 | YebG family protein | |||
| 76 | group_8002 | gene_presence_absence | yeiP | group_8002 | KPN_RS13995 | none confidence | yeiP | elongation factor P-like protein YeiP | KPN_RS13995 | yeiP | elongation factor P-like protein YeiP | none | 20.55 | 8.06 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=20.55; coverage=8.06 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 2857630..2858202 | matched_representative_sequence=group_8002 | AEOABF_05496;AHHNMN_05345;AHNHFK_05589;ANNNIK_05348;BEDDGA_05655;BGGBBI_05094;BLCKKP_05605;CHCLDJ_05453;CPJPGI_05645;DGLKOJ_05477;EKPLKB_05323;EOIIEI_05309;FIIMIJ_05623;FMDNFB_05467;FPBJNE_05356;FPPMFH_05335;GCNAEO_02630;GOALEL_05312;HBAILA_05627;HBKCOO_05463;IBBJOJ_05449;IECKKB_05450;JGNJAB_05492;JJNMLC_05396;JMFOKH_05437;KKELHE_05569;KNNKAF_05323;LBJLPI_05309;LEGHFF_05360;LGDJCA_05301 | elongation factor P-like protein YeiP | ||
| 77 | group_7925 | gene_presence_absence | rpsT | group_7925 | KPN_RS00095 | none confidence | rpsT | 30S ribosomal protein S20 | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 46.32 | 4.55 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=46.32; coverage=4.55 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=group_7925 | AEOABF_05503;AHHNMN_05338;AHNHFK_05697;ANNNIK_05341;BEDDGA_05732;BGGBBI_05087;BLCKKP_05746;CHCLDJ_05460;CPJPGI_05811;DGLKOJ_05484;EKPLKB_05330;EOIIEI_05316;FIIMIJ_05629;FMDNFB_05460;FPBJNE_05363;FPPMFH_05342;GCNAEO_02623;GOALEL_05305;HBAILA_05620;HBKCOO_05470;IBBJOJ_05540;IECKKB_05457;JGNJAB_05618;JJNMLC_05403;JMFOKH_05562;KKELHE_05562;KNNKAF_05330;LBJLPI_05302;LEGHFF_05353;LGDJCA_05294 | 30S ribosomal protein S20 | ||
| 78 | group_7317 | gene_presence_absence | lspA | group_7317 | KPN_RS00110 | none confidence | lspA | signal peptidase II | KPN_RS00110 | lspA | signal peptidase II | none | 35.61 | 4.12 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=35.61; coverage=4.12 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 23564..24064 | matched_representative_sequence=group_7317 | 73_refound_1099_pseudo;75_refound_1132_pseudo;91_refound_1354_pseudo;AEOABF_05423;AHHNMN_02816;AHNHFK_05465;ANNNIK_04528;BEDDGA_03768;BGGBBI_04869;BLCKKP_03390;CHCLDJ_03831;CPJPGI_03140;DGLKOJ_04928;EKPLKB_03084;EOIIEI_04284;FIIMIJ_05498;FPBJNE_03608;FPPMFH_02738;GCNAEO_05360;GOALEL_04718;HBAILA_04437;HBKCOO_03463;IBBJOJ_05391;IECKKB_05373;JGNJAB_03339;JJNMLC_03293;JMFOKH_04727;KKELHE_03231;KNNKAF_03852;LEGHFF_03870 | signal peptidase II | ||
| 79 | group_7262 | gene_presence_absence | group_7262 | group_7262 | KPN_RS07300 | none confidence | group_7262 | Cyanophage baseplate Pam3 plug gp18 domain-containing protein | KPN_RS07300 | MetQ/NlpA family ABC transportersubstrate-binding protein | none | 23.78 | 4.95 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=23.78; coverage=4.95 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1528311..1529117 | matched_representative_sequence=group_7262 | AEOABF_05493;AHHNMN_05348;AHNHFK_05586;ANNNIK_05351;BEDDGA_05658;BGGBBI_05097;BLCKKP_05602;CHCLDJ_05450;CPJPGI_05642;DGLKOJ_05474;EKPLKB_05320;EOIIEI_05306;FIIMIJ_05620;FMDNFB_05470;FPBJNE_05353;FPPMFH_05332;GCNAEO_02633;GOALEL_05315;HBAILA_05630;HBKCOO_05460;IBBJOJ_05446;IECKKB_05447;JGNJAB_05489;JJNMLC_05393;JMFOKH_05440;KKELHE_05572;KNNKAF_05320;LBJLPI_05312;LEGHFF_05363;LGDJCA_05304 | MetQ/NlpA family ABC transportersubstrate-binding protein | |||
| 80 | group_7219 | gene_presence_absence | group_7219 | group_7219 | KPN_RS00065 | none confidence | group_7219 | DUF2541 family protein | KPN_RS00065 | DUF2541 family protein | none | 43.15 | 3.00 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=43.15; coverage=3.00 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12822..13226) | matched_representative_sequence=20_refound_372 | 20_refound_372;AEOABF_05114;AHHNMN_04798;AHNHFK_05367;BEDDGA_05319;BLCKKP_05117;CBCBPB_05220;CHCLDJ_04972;CPJPGI_05038;DGLKOJ_05109;EKPLKB_03527;EOIIEI_05392;FIIMIJ_04947;FMDNFB_04661;FPBJNE_02810;FPPMFH_05395;GCNAEO_04948;GOALEL_04959;HBAILA_04949;HBKCOO_04853;IBBJOJ_04994;IECKKB_05000;JGNJAB_04995;JJNMLC_04692;JMFOKH_02491;KKELHE_05050;KNNKAF_04869;LEGHFF_02426;LGDJCA_02377;MDEGCH_04964 | DUF2541 family protein | |||
| 81 | group_7202 | gene_presence_absence | group_7202 | group_7202 | KPN_RS11145 | none confidence | group_7202 | ATP-grasp fold amidoligase family protein | KPN_RS11145 | ATP-grasp fold amidoligase family protein | none | 26.71 | 4.76 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=26.71; coverage=4.76 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2266264..>2266959) | matched_representative_sequence=18_refound_345 | 18_refound_345;23_refound_427;25_refound_459;26_refound_467;28_refound_502;37_refound_617;43_refound_687;44_refound_696;45_refound_705;49_refound_757;62_refound_929;63_refound_947;64_refound_965;65_refound_977;66_refound_990;67_refound_1001;80_refound_1199;91_refound_1351;97_refound_1443;AHNHFK_04841;ANNNIK_04505;BEDDGA_03745;BLCKKP_03367;CHCLDJ_03808;CPJPGI_03163;DGLKOJ_04951;FIIMIJ_03063;FMDNFB_04839;GCNAEO_03948;HBAILA_04460 | ATP-grasp fold amidoligase family protein | |||
| 82 | group_7153 | gene_presence_absence | yfaU | group_7153 | KPN_RS14230 | none confidence | yfaU | Rz1 lytic protein | KPN_RS14230 | yfaU | 2-keto-3-deoxy-L-rhamnonate aldolase | none | 21.99 | 5.25 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=21.99; coverage=5.25 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2917878..2918681) | matched_representative_sequence=group_7153 | AEOABF_05409;AHHNMN_02830;AHNHFK_05479;ANNNIK_04514;BEDDGA_03754;BGGBBI_04855;BLCKKP_03376;CHCLDJ_03817;CPJPGI_03154;DGLKOJ_04942;EKPLKB_03098;EOIIEI_04298;FIIMIJ_05484;FMDNFB_05367;FPBJNE_03622;FPPMFH_02752;GCNAEO_05374;GOALEL_04732;HBAILA_04451;HBKCOO_03449;IBBJOJ_05377;IECKKB_05387;JGNJAB_03353;JJNMLC_03279;JMFOKH_04741;KKELHE_03245;KNNKAF_03838;LBJLPI_03990;LEGHFF_03884;LGDJCA_04409 | 2-keto-3-deoxy-L-rhamnonate aldolase | ||
| 83 | group_7126 | gene_presence_absence | group_7126 | group_7126 | KPN_RS11490 | none confidence | group_7126 | hypothetical protein | KPN_RS11490 | hypothetical protein | none | 39.18 | 8.20 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.18; coverage=8.20 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(2336344..2336502) | matched_representative_sequence=80_refound_1200 | 80_refound_1200;AEOABF_05113;AHHNMN_04797;AHNHFK_05368;BEDDGA_05318;BGGBBI_04701;BLCKKP_05116;CBCBPB_05219;CHCLDJ_04973;CPJPGI_05039;DGLKOJ_05110;EKPLKB_03528;FIIMIJ_04946;FMDNFB_04662;FPBJNE_02809;FPPMFH_05396;GCNAEO_04947;GOALEL_04960;HBAILA_04950;HBKCOO_04852;IBBJOJ_04995;IECKKB_05001;JGNJAB_04994;JJNMLC_04693;JMFOKH_02492;KKELHE_05051;KNNKAF_04868;LEGHFF_02425;LGDJCA_02376;MDEGCH_04963 | hypothetical protein | |||
| 84 | group_7065 | gene_presence_absence | fkpB | group_7065 | KPN_RS00115 | none confidence | fkpB | Lipoprotein | KPN_RS00115 | fkpB | FKBP-type peptidyl-prolyl cis-trans isomerase | none | 37.37 | 2.92 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=37.37; coverage=2.92 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 24180..24629 | matched_representative_sequence=group_7065 | AEOABF_05495;AHHNMN_05346;AHNHFK_05588;ANNNIK_05349;BEDDGA_05656;BGGBBI_05095;BLCKKP_05604;CHCLDJ_05452;CPJPGI_05644;DGLKOJ_05476;EKPLKB_05322;EOIIEI_05308;FIIMIJ_05622;FMDNFB_05468;FPBJNE_05355;FPPMFH_05334;GCNAEO_02631;GOALEL_05313;HBAILA_05628;HBKCOO_05462;IBBJOJ_05448;IECKKB_05449;JGNJAB_05491;JJNMLC_05395;JMFOKH_05438;KKELHE_05570;KNNKAF_05322;LBJLPI_05310;LEGHFF_05361;LGDJCA_05302 | FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| 85 | grlR | gene_presence_absence | rpsT | grlR | KPN_RS00095 | none confidence | rpsT | Negative regulator GrlR | KPN_RS00095 | rpsT | 30S ribosomal protein S20 | none | 42.83 | 1.96 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=42.83; coverage=1.96 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(19173..19436) | matched_representative_sequence=grlR | AEOABF_05410;AHHNMN_02829;AHNHFK_05478;ANNNIK_04515;BEDDGA_03755;BGGBBI_04856;BLCKKP_03377;CHCLDJ_03818;CPJPGI_03153;DGLKOJ_04941;EKPLKB_03097;EOIIEI_04297;FIIMIJ_05485;FMDNFB_05368;FPBJNE_03621;FPPMFH_02751;GCNAEO_05373;GOALEL_04731;HBAILA_04450;HBKCOO_03450;IBBJOJ_05378;IECKKB_05386;JGNJAB_03352;JJNMLC_03280;JMFOKH_04740;KKELHE_03244;KNNKAF_03839;LBJLPI_03991;LEGHFF_03883;LGDJCA_04408 | 30S ribosomal protein S20 | ||
| 86 | group_6679 | gene_presence_absence | group_6679 | group_6679 | KPN_RS05030 | none confidence | group_6679 | Bacteriophage protein | KPN_RS05030 | DUF421 domain-containing protein | none | 31.10 | 3.99 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=31.10; coverage=3.99 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 1052106..1052798 | matched_representative_sequence=group_6679 | AEOABF_05489;AHHNMN_05352;AHNHFK_05582;ANNNIK_05355;BEDDGA_05662;BGGBBI_05100;BLCKKP_05598;CHCLDJ_05446;CPJPGI_05639;DGLKOJ_05470;EKPLKB_05316;EOIIEI_05302;FIIMIJ_05616;FMDNFB_05474;FPBJNE_05349;FPPMFH_05329;GCNAEO_02636;GOALEL_05319;HBAILA_05634;HBKCOO_05456;IBBJOJ_05442;IECKKB_05444;JGNJAB_05485;JJNMLC_05389;JMFOKH_05444;KKELHE_05576;KNNKAF_05316;LBJLPI_05316;LEGHFF_05367;LGDJCA_05308 | DUF421 domain-containing protein | |||
| 87 | group_6432 | gene_presence_absence | group_6432 | group_6432 | KPN_RS05800 | none confidence | group_6432 | Maf family protein | KPN_RS05800 | Maf family protein | none | 33.62 | 3.12 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=33.62; coverage=3.12 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(1236878..1237462) | matched_representative_sequence=group_6432 | AEOABF_03049;AHHNMN_02849;AHNHFK_04852;ANNNIK_04494;BEDDGA_03734;BGGBBI_04883;BLCKKP_03356;CHCLDJ_03797;CPJPGI_03174;DGLKOJ_04962;EKPLKB_03117;EOIIEI_04317;FIIMIJ_03074;FMDNFB_04850;FPBJNE_03641;FPPMFH_02771;GCNAEO_03959;GOALEL_04751;HBAILA_04471;HBKCOO_03430;IBBJOJ_03633;IECKKB_03655;JGNJAB_03372;JJNMLC_03259;JMFOKH_04761;KKELHE_03265;KNNKAF_03819;LBJLPI_03971;LEGHFF_03903;LGDJCA_04429 | Maf family protein | |||
| 88 | group_6215 | gene_presence_absence | lspA | group_6215 | KPN_RS00110 | none confidence | lspA | Lysozyme | KPN_RS00110 | lspA | signal peptidase II | none | 38.18 | 1.51 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=38.18; coverage=1.51 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 23564..24064 | matched_representative_sequence=group_6215 | AEOABF_05408;AHHNMN_02831;AHNHFK_05480;ANNNIK_04513;BEDDGA_03753;BGGBBI_04854;BLCKKP_03375;CHCLDJ_03816;CPJPGI_03155;DGLKOJ_04943;EKPLKB_03099;EOIIEI_04299;FIIMIJ_05483;FMDNFB_05366;FPBJNE_03623;FPPMFH_02753;GCNAEO_05375;GOALEL_04733;HBAILA_04452;HBKCOO_03448;IBBJOJ_05376;IECKKB_05388;JGNJAB_03354;JJNMLC_03278;JMFOKH_04742;KKELHE_03246;KNNKAF_03837;LBJLPI_03989;LEGHFF_03885;LGDJCA_04410 | signal peptidase II | ||
| 89 | group_6054 | gene_presence_absence | malZ | group_6054 | KPN_RS01840 | none confidence | malZ | Peptidase M41 domain-containing protein | KPN_RS01840 | malZ | maltodextrin glucosidase | none | 23.82 | 2.65 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=23.82; coverage=2.65 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 385411..387228 | matched_representative_sequence=group_6054 | AEOABF_05497;AHHNMN_05344;AHNHFK_05590;ANNNIK_05347;BEDDGA_05654;BGGBBI_05093;BLCKKP_05606;CHCLDJ_05454;CPJPGI_05646;DGLKOJ_05478;EKPLKB_05324;EOIIEI_05310;FIIMIJ_05624;FMDNFB_05466;FPBJNE_05357;FPPMFH_05336;GCNAEO_02629;GOALEL_05311;HBAILA_05626;HBKCOO_05464;IBBJOJ_05450;IECKKB_05451;JGNJAB_05493;JJNMLC_05397;JMFOKH_05436;KKELHE_05568;KNNKAF_05324;LBJLPI_05308;LEGHFF_05359;LGDJCA_05300 | maltodextrin glucosidase | ||
| 90 | group_5931 | gene_presence_absence | group_5931 | group_5931 | KPN_RS23815 | none confidence | group_5931 | Dit-like phage tail protein N-terminal domain-containing protein | KPN_RS23815 | maltoporin | none | 25.82 | 2.50 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=25.82; coverage=2.50 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4842153..4843442 | matched_representative_sequence=group_5931 | AEOABF_05492;AHHNMN_05349;AHNHFK_05585;ANNNIK_05352;BEDDGA_05659;BGGBBI_05098;BLCKKP_05601;CHCLDJ_05449;CPJPGI_05641;DGLKOJ_05473;EKPLKB_05319;EOIIEI_05305;FIIMIJ_05619;FMDNFB_05471;FPBJNE_05352;FPPMFH_05331;GCNAEO_02634;GOALEL_05316;HBAILA_05631;HBKCOO_05459;IBBJOJ_05445;IECKKB_05446;JGNJAB_05488;JJNMLC_05392;JMFOKH_05441;KKELHE_05573;KNNKAF_05319;LBJLPI_05313;LEGHFF_05364;LGDJCA_05305 | maltoporin | |||
| 91 | group_5470 | gene_presence_absence | lamG | group_5470 | KPN_RS20210 | none confidence | lamG | LamG domain-containing protein | KPN_RS20210 | hydrolase | none | 34.08 | 2.05 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=34.08; coverage=2.05 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 4083081..4084079 | matched_representative_sequence=group_5470 | AEOABF_05387;AHHNMN_02306;AHNHFK_05684;ANNNIK_05733;BEDDGA_05726;BGGBBI_05289;BLCKKP_03079;CHCLDJ_03124;CPJPGI_03703;DGLKOJ_05339;EKPLKB_05194;EOIIEI_05393;FIIMIJ_01902;FMDNFB_05578;FPBJNE_05284;FPPMFH_03553;GCNAEO_02621;GOALEL_03177;HBAILA_02860;HBKCOO_05265;IBBJOJ_03031;IECKKB_02498;JGNJAB_02946;JJNMLC_01637;JMFOKH_02981;KKELHE_03229;KNNKAF_05198;LBJLPI_01589;LEGHFF_03868;LGDJCA_05202 | hydrolase | |||
| 92 | group_4414 | gene_presence_absence | group_4414 | group_4414 | KPN_RS02240 | none confidence | group_4414 | Bacteriophage protein | KPN_RS02240 | YczE/YyaS/YitT family protein | none | 30.28 | 1.76 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=30.28; coverage=1.76 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 464445..465059 | matched_representative_sequence=group_4414 | AEOABF_05494;AHHNMN_05347;AHNHFK_05587;ANNNIK_05350;BEDDGA_05657;BGGBBI_05096;BLCKKP_05603;CHCLDJ_05451;CPJPGI_05643;DGLKOJ_05475;EKPLKB_05321;EOIIEI_05307;FIIMIJ_05621;FMDNFB_05469;FPBJNE_05354;FPPMFH_05333;GCNAEO_02632;GOALEL_05314;HBAILA_05629;HBKCOO_05461;IBBJOJ_05447;IECKKB_05448;JGNJAB_05490;JJNMLC_05394;JMFOKH_05439;KKELHE_05571;KNNKAF_05321;LBJLPI_05311;LEGHFF_05362;LGDJCA_05303 | YczE/YyaS/YitT family protein | |||
| 93 | group_2508 | gene_presence_absence | msyB | group_2508 | KPN_RS00060 | none confidence | msyB | DUF4071 domain-containing protein | KPN_RS00060 | msyB | acidic protein MsyB | none | 29.27 | 0.71 | Displayed from Panaroo/Bakta annotation; no stronger GenBank rescue available. | identity=29.27; coverage=0.71 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(12045..12794) | matched_representative_sequence=group_2508 | AEOABF_05122;AHHNMN_04806;AHNHFK_05565;ANNNIK_05664;BEDDGA_05328;BGGBBI_05320;BLCKKP_05125;CHCLDJ_04963;CPJPGI_05030;DGLKOJ_05100;EKPLKB_03519;EOIIEI_05320;FIIMIJ_04956;FMDNFB_04653;FPBJNE_02818;FPPMFH_05322;GCNAEO_04957;GOALEL_04951;HBAILA_04940;HBKCOO_04861;IBBJOJ_04986;IECKKB_04992;JGNJAB_05004;JJNMLC_04684;JMFOKH_02482;KKELHE_05042;KNNKAF_04877;LEGHFF_02434;LGDJCA_02385;MDEGCH_05334 | acidic protein MsyB | ||
| 94 | group_617 | gene_presence_absence | KPN_RS19295-like (group_617) | group_617 | KPN_RS19295 | low confidence | group_617 | peptidoglycan lytic exotransglycosylase | KPN_RS19295 | type 1 glutamine amidotransferasedomain-containing protein | low | 99.63 | 59.03 | Low-confidence locus-level GenBank rescue. | identity=99.63; coverage=59.03 | 36 | 50 | 0.7200 | 5 | 50 | 0.1000 | cases (blaKPC positive) | 3.14 | 20.8245 | 7.116-60.94 | 7.11573 | 60.9436 | 4.09e-11 | 17.7685 | Panaroo/Bakta+GenBank | nucleotide_similarity | 3922434..3922970 | matched_representative_sequence=group_6173 | AEOABF_05491;AHHNMN_05350;AHNHFK_05584;ANNNIK_05353;BEDDGA_05660;BGGBBI_05099;BLCKKP_05600;CHCLDJ_05448;CPJPGI_05640;DGLKOJ_05472;EKPLKB_05318;EOIIEI_05304;FIIMIJ_05618;FMDNFB_05472;FPBJNE_05351;FPPMFH_05330;GCNAEO_02635;GOALEL_05317;HBAILA_05632;HBKCOO_05458;IBBJOJ_05444;IECKKB_05445;JGNJAB_05487;JJNMLC_05391;JMFOKH_05442;KKELHE_05574;KNNKAF_05318;LBJLPI_05314;LEGHFF_05365;LGDJCA_05306 | type 1 glutamine amidotransferasedomain-containing protein | |||
| 95 | group_8737 | gene_presence_absence | group_8737 | group_8737 | KPN_RS00035 | none confidence | group_8737 | hypothetical protein;Protein kinase domain-containing protein | KPN_RS00035 | alanine/glycine:cation symporter family protein | none | 28.66 | 0.60 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=28.66; coverage=0.60 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | complement(6630..8060) | matched_representative_sequence=group_8737 | BHONMK_05068;DDIAJH_04909;DDIAJH_04910;DFFAJH_05012;EANECB_04728;EDGMEC_04868;EMKGNF_05060;FCNFGC_04996;FIDANP_04768;HFMEMF_05231;HGIJOB_04963;IKNKDK_04690;JEGCDC_04910;KAFEBA_05032;KKNIEC_04647;KLPANJ_05117;KPDGKM_05038;MBNFKH_04003;MJEKEA_04269;OCFBPG_04449;OCGJJJ_04836;OCGJJJ_04837;PKAHKO_05159;PMCEMD_04520 | alanine/glycine:cation symporter family protein | |||
| 96 | group_8416 | gene_presence_absence | group_8416 | group_8416 | KPN_RS32305 | none confidence | group_8416 | hypothetical protein;Transmembrane protein | KPN_RS32305 | DUF2575 domain-containing protein | none | 40.07 | 1.78 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=40.07; coverage=1.78 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | <19553..19758 | matched_representative_sequence=89_refound_1324 | 89_refound_1324;ACMLHL_05060;BEDOHD_04968;CNHCKF_04570;DDIAJH_04505;EANECB_05412;EDGMEC_05041;FIDANP_05191;FLEPEF_05666;HFMEMF_05130;IKNKDK_05201;JEGCDC_05323;JKABKE_05306;KAFEBA_04792;KKNIEC_05194;KLPANJ_05032;KPDGKM_05288;MBNFKH_05428;MJEKEA_04860;OHBKLB_04705;PKAHKO_05252;PMCEMD_05166 | DUF2575 domain-containing protein | |||
| 97 | group_7452 | gene_presence_absence | group_7452 | group_7452 | KPN_RS00025 | none confidence | group_7452 | XRE family transcriptional regulator | KPN_RS00025 | hypothetical protein | none | 35.91 | 3.00 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=35.91; coverage=3.00 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | 5332..5710 | matched_representative_sequence=group_7452 | AIJMHO_04703;BMDOOG_04781;CCKLPP_04854;CEPDLH_04532;EANECB_05375;EDGMEC_05418;FFLFOK_04596;FLEPEF_04840;HABJKE_04696;HFMEMF_05224;JEGCDC_05406;KAFEBA_05298;KKNIEC_05253;KLPANJ_05469;KPDGKM_05424;LBJLPI_04354;MBNFKH_05127;MJEKEA_05299;OCFBPG_05240;OHBKLB_04273;PKAHKO_05127;PMCEMD_05181 | hypothetical protein | |||
| 98 | group_2083 | gene_presence_absence | group_2083 | group_2083 | KPN_RS01710 | none confidence | group_2083 | MPN domain-containing protein | KPN_RS01710 | isochorismatase family protein | none | 37.80 | 3.56 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=37.80; coverage=3.56 | 0 | 50 | 0.0000 | 22 | 50 | 0.4400 | controls (blaKPC negative) | -4.38 | 0.0125413 | 0.0007328-0.2146 | 0.000732834 | 0.214623 | 3.78e-09 | 17.7397 | Panaroo/Bakta+GenBank | nucleotide_similarity | 359394..359906 | matched_representative_sequence=group_2083 | AIJMHO_04704;BMDOOG_04782;CCKLPP_04853;CEPDLH_04533;EANECB_05374;EDGMEC_05417;FFLFOK_04597;FLEPEF_04839;HABJKE_04697;HFMEMF_05223;JEGCDC_05405;KAFEBA_05297;KKNIEC_05254;KLPANJ_05468;KPDGKM_05425;LBJLPI_04355;MBNFKH_05126;MJEKEA_05298;OCFBPG_05239;OHBKLB_04272;PKAHKO_05128;PMCEMD_05182 | isochorismatase family protein | |||
| 99 | group_3897 | gene_presence_absence | group_3897 | group_3897 | KPN_RS32305 | none confidence | group_3897 | DUF2575 domain-containing protein | KPN_RS32305 | DUF2575 domain-containing protein | none | 39.12 | 6.31 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=39.12; coverage=6.31 | 13 | 50 | 0.2600 | 44 | 50 | 0.8800 | controls (blaKPC negative) | -3.04 | 0.0525843 | 0.01874-0.1475 | 0.0187416 | 0.147539 | 6.5e-11 | 17.4363 | Panaroo/Bakta+GenBank | nucleotide_similarity | <19553..19758 | matched_representative_sequence=group_3897 | ACMLHL_00892;AENLJA_03981;AIJMHO_04529;BEDOHD_04716;BHONMK_01817;BMDOOG_00336;CCKLPP_01401;CEPDLH_04780;CNHCKF_03280;DDIAJH_02925;DFFAJH_01131;DFFEKE_02660;DMJFLM_03642;EANECB_00151;EDGMEC_00433;EEHIAL_00346;EMKGNF_02911;FCNFGC_00394;FFLFOK_02617;FIDANP_02569;FKAIBJ_00592;FLEPEF_01656;GHEABH_00641;GNFDFK_01157;HABJKE_02312;HFMEMF_00500;HGIJOB_01886;HPFPEC_04817;IDECLH_04620;IILOJN_00264 | DUF2575 domain-containing protein | |||
| 100 | group_3876 | gene_presence_absence | group_3876 | group_3876 | KPN_RS04255 | none confidence | group_3876 | Universal stress protein G;hypothetical protein | KPN_RS04255 | universal stress protein | none | 92.82 | 12.96 | No confident reference gene assignment; report the stable Panaroo cluster ID. | identity=92.82; coverage=12.96 | 13 | 50 | 0.2600 | 44 | 50 | 0.8800 | controls (blaKPC negative) | -3.04 | 0.0525843 | 0.01874-0.1475 | 0.0187416 | 0.147539 | 6.5e-11 | 17.4363 | Panaroo/Bakta+GenBank | nucleotide_similarity | 878435..878866 | matched_representative_sequence=group_3876 | ACMLHL_00893;AENLJA_03980;AIJMHO_04530;BEDOHD_04717;BHONMK_01818;BMDOOG_00335;CCKLPP_01402;CEPDLH_04781;CNHCKF_03279;DDIAJH_02924;DFFAJH_01130;DFFEKE_02659;DMJFLM_03641;EANECB_00150;EDGMEC_00434;EEHIAL_00345;EMKGNF_02912;FCNFGC_00393;FFLFOK_02616;FIDANP_02568;FKAIBJ_00593;FLEPEF_01655;GHEABH_00640;GNFDFK_01158;HABJKE_02313;HFMEMF_00501;HGIJOB_01885;HPFPEC_04818;IDECLH_04619;IILOJN_00263 | universal stress protein |
Showing 100 of 2339 rows.
| Confidence | Rule | Interpretation |
|---|---|---|
| high | >=95% identity and >=90% coverage, or exact qualifier-level support | Strong reference-supported annotation |
| medium | >=85% identity and >=70% coverage | Plausible annotation; inspect manually |
| low | >=60% identity and >=50% coverage, or weak/partial support | Tentative annotation only |
| none | No usable GenBank match | Keep the pangenome/SNP marker identifier |
metric value reference_cds_parsed 5041 reference_parse_warning panaroo_clusters_parsed 11475 annotation_engine Panaroo/Bakta fasta_records_parsed 547286 top_priority_input rMAP_GWAS_top_priority_hits.tsv all_significant_input rMAP_GWAS_all_significant_hits.tsv method GenBank qualifier matching plus pure-Python nucleotide similarity rescue when Panaroo representative sequences are available
rMAP-GWAS sample-set input validation report ================================================ Cases (blaKPC positive): 50 Controls (blaKPC negative): 50 Total samples: 100 Case (blaKPC positive) label: case (blaKPC positive) Control (blaKPC negative) label: control (blaKPC negative) Phenotype display metadata values provided: yes Unique phenotype display values: blaKPC_negative, blaKPC_positive Status: PASS
Panaroo output files: panaroo_out/combined_DNA_CDS.fasta panaroo_out/combined_protein_CDS.fasta panaroo_out/combined_protein_cdhit_out.txt panaroo_out/combined_protein_cdhit_out.txt.clstr panaroo_out/final_graph.gml panaroo_out/gene_data.csv panaroo_out/gene_presence_absence.Rtab panaroo_out/gene_presence_absence.csv panaroo_out/gene_presence_absence_roary.csv panaroo_out/pan_genome_reference.fa panaroo_out/pre_filt_graph.gml panaroo_out/struct_presence_absence.Rtab panaroo_out/summary_statistics.txt
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